Wall clock time and date at job start Tue Mar 31 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47051 * 2 1 4 4 C 1.53002 * 109.47181 * 239.99859 * 2 1 3 5 5 C 1.52995 * 109.47374 * 174.82789 * 4 2 1 6 6 C 1.50701 * 109.47553 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00038 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99641 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00425 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47107 * 89.99656 * 10 8 6 12 12 H 1.48494 * 109.47245 * 209.99828 * 10 8 6 13 13 H 1.48500 * 109.46985 * 330.00254 * 10 8 6 14 14 N 1.46904 * 109.47225 * 120.00025 * 2 1 3 15 15 C 1.47629 * 110.99685 * 50.61074 * 14 2 1 16 16 C 1.50817 * 108.03687 * 150.33408 * 15 14 2 17 17 C 1.53819 * 111.56666 * 95.09025 * 16 15 14 18 18 C 1.54119 * 112.00097 * 318.93815 * 17 16 15 19 19 C 1.50752 * 112.64465 * 318.59198 * 18 17 16 20 20 H 1.09004 * 109.54673 * 333.09615 * 19 18 17 21 21 C 1.53002 * 109.54757 * 212.82425 * 19 18 17 22 22 C 1.52994 * 109.47159 * 65.45304 * 21 19 18 23 23 C 1.53002 * 109.47066 * 180.02562 * 22 21 19 24 24 N 1.46905 * 109.46869 * 180.02562 * 23 22 21 25 25 C 1.39779 * 110.99940 * 281.70491 * 14 2 1 26 26 H 1.09000 * 109.47033 * 300.00402 * 1 2 3 27 27 H 1.08997 * 109.47538 * 60.00026 * 1 2 3 28 28 H 1.09004 * 109.47506 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47057 * 294.82987 * 4 2 1 30 30 H 1.09007 * 109.46808 * 54.82660 * 4 2 1 31 31 H 1.09004 * 109.47190 * 300.00116 * 5 4 2 32 32 H 1.08996 * 109.47374 * 59.99665 * 5 4 2 33 33 H 0.96997 * 120.00070 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.75365 * 30.69258 * 15 14 2 35 35 H 1.09002 * 109.78292 * 269.98674 * 15 14 2 36 36 H 1.09001 * 109.05274 * 215.60875 * 16 15 14 37 37 H 1.08998 * 109.04790 * 334.57704 * 16 15 14 38 38 H 1.08996 * 108.97779 * 79.64511 * 17 16 15 39 39 H 1.08996 * 108.98224 * 198.36200 * 17 16 15 40 40 H 1.09000 * 108.88000 * 197.74886 * 18 17 16 41 41 H 1.08994 * 108.71298 * 79.32856 * 18 17 16 42 42 H 1.08994 * 109.47161 * 185.45546 * 21 19 18 43 43 H 1.09000 * 109.46619 * 305.45151 * 21 19 18 44 44 H 1.09007 * 109.46970 * 300.00275 * 22 21 19 45 45 H 1.09000 * 109.47481 * 60.00374 * 22 21 19 46 46 H 1.08994 * 109.46893 * 300.00020 * 23 22 21 47 47 H 1.08999 * 109.47238 * 60.00164 * 23 22 21 48 48 H 1.00906 * 110.99447 * 179.97438 * 24 23 22 49 49 H 1.00896 * 111.00115 * 303.94574 * 24 23 22 50 50 H 1.09001 * 109.02210 * 309.73154 * 25 14 2 51 51 H 1.09006 * 109.01861 * 68.62526 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5644 -0.6097 -1.3160 6 6 4.0667 -1.3196 -2.5468 7 1 3.3684 -1.8017 -3.2148 8 6 5.4176 -1.3526 -2.8205 9 7 5.8559 -1.9717 -3.8949 10 14 6.6254 -0.5180 -1.6654 11 1 7.0648 -1.4839 -0.6265 12 1 7.8048 -0.0497 -2.4365 13 1 5.9665 0.6429 -1.0148 14 7 2.0197 -0.6925 1.1995 15 6 1.3714 -2.0101 1.3513 16 6 2.3384 -2.9279 2.0563 17 6 2.0844 -2.9595 3.5730 18 6 1.7718 -1.5591 4.1354 19 6 2.6511 -0.4867 3.5444 20 1 3.5983 -0.9245 3.2290 21 6 2.9101 0.5979 4.5920 22 6 3.7266 0.0095 5.7442 23 6 3.9850 1.0940 6.7921 24 7 4.7696 0.5291 7.8982 25 6 1.9370 0.1338 2.3238 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.7542 -1.7722 -1.2041 30 1 1.6029 -0.2637 -2.1368 31 1 3.8501 0.4413 -1.3611 32 1 4.0014 -1.0671 -0.4284 33 1 6.8063 -1.9953 -4.0873 34 1 1.1275 -2.4160 0.3695 35 1 0.4621 -1.9079 1.9437 36 1 2.2286 -3.9358 1.6561 37 1 3.3555 -2.5815 1.8731 38 1 1.2423 -3.6206 3.7777 39 1 2.9703 -3.3513 4.0728 40 1 1.9121 -1.5736 5.2162 41 1 0.7306 -1.3198 3.9191 42 1 3.4640 1.4185 4.1361 43 1 1.9588 0.9693 4.9732 44 1 3.1726 -0.8112 6.2001 45 1 4.6779 -0.3618 5.3630 46 1 4.5387 1.9148 6.3365 47 1 3.0336 1.4649 7.1734 48 1 4.9539 1.2265 8.6038 49 1 4.3072 -0.2747 8.2959 50 1 2.3975 1.0945 2.0932 51 1 0.8874 0.2935 2.5709 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:41 Heat of formation + Delta-G solvation = -28.493209 kcal Electronic energy + Delta-G solvation = -23840.133347 eV Core-core repulsion = 20772.896768 eV Total energy + Delta-G solvation = -3067.236579 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.92885 -37.02799 -35.40358 -33.33290 -33.15432 -31.54497 -29.91108 -29.37735 -26.48678 -25.41260 -24.91113 -23.67166 -21.49365 -21.06768 -20.34170 -19.70647 -18.60284 -16.56043 -16.33381 -16.10104 -15.43229 -15.27676 -14.81953 -14.66595 -14.34662 -14.11550 -13.66053 -13.36162 -13.22799 -12.73032 -12.61638 -12.39184 -12.26909 -12.20936 -11.84077 -11.70288 -11.63561 -11.35945 -11.24673 -10.99446 -10.87593 -10.76174 -10.56964 -10.37596 -10.18636 -10.09483 -10.00459 -9.78952 -9.52337 -9.39267 -9.02148 -8.97110 -8.39616 -7.70236 -5.91689 -3.87483 3.42338 3.48589 3.55340 4.08330 4.32527 4.58547 4.66295 4.77276 4.84835 4.95781 5.06817 5.16915 5.26929 5.29933 5.35680 5.44017 5.44460 5.49057 5.50387 5.57769 5.60390 5.69599 5.71176 5.79004 5.87266 5.92645 5.94563 6.02579 6.09002 6.11899 6.14744 6.22990 6.30603 6.32876 6.36227 6.41491 6.57986 6.59407 6.67568 6.79956 6.81564 7.08785 7.14723 7.54582 7.57654 7.75576 7.86319 7.98137 8.68801 9.14612 9.72866 11.22234 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004692 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.801411 B = 5965.909191 C = 6996.810946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.092 4.092 5 C -0.005 4.005 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.541 5.541 15 C 0.070 3.930 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.087 4.087 20 H 0.085 0.915 21 C -0.109 4.109 22 C -0.119 4.119 23 C 0.060 3.940 24 N -0.853 5.853 25 C 0.085 3.915 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.007 0.993 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.023 0.977 48 H 0.339 0.661 49 H 0.339 0.661 50 H 0.066 0.934 51 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 4.075 21.588 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.092 0.908 4 C -0.130 4.130 5 C -0.042 4.042 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.190 1.190 14 N -0.264 5.264 15 C -0.057 4.057 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.106 4.106 20 H 0.103 0.897 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.071 4.071 24 N -0.383 5.383 25 C -0.045 4.045 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.041 0.959 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.084 0.916 51 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.844 3.826 20.891 23.006 hybrid contribution -0.948 0.797 1.223 1.740 sum -9.792 4.622 22.114 24.622 Atomic orbital electron populations 1.22472 0.98472 1.01775 1.01203 1.21875 0.91416 0.98022 0.91078 0.90823 1.21534 0.99078 0.98960 0.93450 1.19453 0.91388 0.96192 0.97187 1.21257 0.92792 1.33766 1.07509 0.91475 1.25020 0.98449 0.95078 0.95077 1.69934 1.14399 1.44145 1.26533 0.86751 0.80562 0.80707 0.81087 1.20390 1.21853 1.18956 1.58831 1.60075 1.04149 1.03321 1.21749 0.94587 0.89154 1.00168 1.21437 1.01746 0.99084 0.93628 1.21894 1.00795 0.96199 0.96405 1.21508 0.99338 0.94719 0.99613 1.21072 1.00297 0.95164 0.94033 0.89668 1.21537 0.99541 0.98254 0.95466 1.21640 1.00872 0.97710 0.95437 1.21841 0.95151 0.97663 0.92418 1.58705 1.52865 1.12160 1.14525 1.20935 0.97093 0.96020 0.90410 0.93695 0.92290 0.92535 0.92770 0.92884 0.97484 0.95566 0.93007 0.90375 0.94897 0.92172 0.90146 0.92930 0.92531 0.92308 0.92932 0.91698 0.92475 0.91985 0.90960 0.91071 0.95860 0.84851 0.84887 0.91610 0.97086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.65 37.15 0.32 -2.10 16 2 C 0.08 1.34 2.23 -67.71 -0.15 1.19 16 3 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 4 C -0.09 -1.83 4.59 -26.73 -0.12 -1.96 16 5 C 0.00 -0.12 3.93 -27.88 -0.11 -0.23 16 6 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.88 13.96 55.43 0.77 -28.10 16 10 Si 0.88 22.71 27.47 -169.99 -4.67 18.04 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 14 N -0.54 -8.28 3.30 -231.99 -0.76 -9.05 16 15 C 0.07 0.99 3.71 -4.52 -0.02 0.97 16 16 C -0.12 -1.66 5.41 -27.40 -0.15 -1.81 16 17 C -0.12 -1.30 5.91 -25.72 -0.15 -1.45 16 18 C -0.11 -1.22 4.76 -27.27 -0.13 -1.35 16 19 C -0.09 -1.02 1.91 -91.00 -0.17 -1.19 16 20 H 0.08 1.18 7.11 -51.93 -0.37 0.81 16 21 C -0.11 -1.08 4.59 -26.73 -0.12 -1.20 16 22 C -0.12 -1.11 5.28 -26.73 -0.14 -1.25 16 23 C 0.06 0.51 6.79 -3.82 -0.03 0.48 16 24 N -0.85 -6.81 9.62 -10.37 -0.10 -6.90 16 25 C 0.09 1.13 4.13 -6.75 -0.03 1.10 16 26 H 0.04 0.55 7.16 -51.93 -0.37 0.18 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 29 H 0.05 1.09 6.33 -51.93 -0.33 0.76 16 30 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 32 H 0.03 0.65 7.19 -51.93 -0.37 0.28 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.08 1.19 5.48 -51.93 -0.28 0.91 16 35 H 0.03 0.43 6.59 -51.93 -0.34 0.09 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.30 7.26 -51.93 -0.38 0.92 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.56 5.79 -51.93 -0.30 0.26 16 41 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 42 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 6.27 -51.93 -0.33 0.23 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.34 2.12 9.08 -39.29 -0.36 1.77 16 49 H 0.34 2.29 8.99 -39.29 -0.35 1.94 16 50 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 51 H 0.01 0.14 6.55 -51.93 -0.34 -0.20 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -31.23 369.10 -10.41 -41.63 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.78 Total: 1.17 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.43 Total: -22.35 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.09 Total: -44.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.67 Total: 18.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.23 -10.41 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds