Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46801 * 90.00427 * 10 8 6 12 12 H 1.48497 * 109.47183 * 210.00278 * 10 8 6 13 13 H 1.48493 * 109.46964 * 330.00329 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.44298 * 111.00398 * 306.05031 * 14 2 1 16 16 C 1.53981 * 108.31595 * 221.35030 * 15 14 2 17 17 C 1.45876 * 112.66226 * 278.59769 * 16 15 14 18 18 C 1.54517 * 111.67385 * 61.50197 * 17 16 15 19 19 C 1.50539 * 108.86219 * 282.75851 * 18 17 16 20 20 H 1.08996 * 108.79350 * 330.96982 * 19 18 17 21 21 C 1.52998 * 108.79061 * 212.63848 * 19 18 17 22 22 C 1.53007 * 109.46738 * 65.00159 * 21 19 18 23 23 C 1.53007 * 109.46818 * 179.97438 * 22 21 19 24 24 N 1.46901 * 109.46852 * 180.02562 * 23 22 21 25 25 C 1.47945 * 110.99748 * 73.46953 * 14 2 1 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 31 31 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 32 32 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 33 33 H 0.96998 * 120.00250 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.69119 * 341.05382 * 15 14 2 35 35 H 1.08998 * 109.69401 * 101.60178 * 15 14 2 36 36 H 1.08998 * 108.84703 * 39.41708 * 16 15 14 37 37 H 1.08999 * 108.84650 * 157.88786 * 16 15 14 38 38 H 1.09002 * 109.04223 * 182.06955 * 17 16 15 39 39 H 1.09005 * 109.04142 * 300.94020 * 17 16 15 40 40 H 1.08995 * 109.57005 * 42.56894 * 18 17 16 41 41 H 1.09004 * 109.57410 * 162.82297 * 18 17 16 42 42 H 1.09003 * 109.47443 * 184.99648 * 21 19 18 43 43 H 1.08996 * 109.47243 * 305.00375 * 21 19 18 44 44 H 1.08997 * 109.47113 * 299.99677 * 22 21 19 45 45 H 1.08996 * 109.47077 * 60.00115 * 22 21 19 46 46 H 1.08997 * 109.47154 * 299.99823 * 23 22 21 47 47 H 1.08996 * 109.47063 * 60.00277 * 23 22 21 48 48 H 1.00898 * 110.99935 * 56.04526 * 24 23 22 49 49 H 1.00902 * 110.99988 * 180.02562 * 24 23 22 50 50 H 1.09005 * 108.70850 * 313.17287 * 25 14 2 51 51 H 1.08994 * 108.71470 * 71.18264 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 6.2690 -0.7756 2.0007 10 14 6.0411 -2.2409 4.3410 11 1 6.3207 -3.6618 4.0126 12 1 7.2876 -1.5879 4.8154 13 1 5.0099 -2.1728 5.4074 14 7 2.0196 -0.6926 -1.1994 15 6 1.4446 -2.0118 -1.3059 16 6 2.5477 -2.9852 -1.7606 17 6 2.7694 -2.9497 -3.2020 18 6 3.2317 -1.5530 -3.6740 19 6 2.0391 -0.6356 -3.7209 20 1 1.1478 -1.2286 -3.9257 21 6 2.2340 0.3684 -4.8588 22 6 2.2379 -0.3725 -6.1975 23 6 2.4323 0.6316 -7.3356 24 7 2.4354 -0.0797 -8.6209 25 6 1.8258 0.1386 -2.4078 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6055 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2057 31 1 3.9994 -1.0729 0.4260 32 1 3.8532 0.4370 1.3573 33 1 7.2197 -0.8013 2.1918 34 1 1.0572 -2.3229 -0.3358 35 1 0.6372 -2.0025 -2.0381 36 1 3.4774 -2.7248 -1.2549 37 1 2.2634 -3.9978 -1.4745 38 1 3.5319 -3.6837 -3.4627 39 1 1.8407 -3.2077 -3.7111 40 1 3.9694 -1.1574 -2.9760 41 1 3.6739 -1.6310 -4.6673 42 1 1.4201 1.0934 -4.8472 43 1 3.1840 0.8864 -4.7275 44 1 3.0518 -1.0974 -6.2092 45 1 1.2880 -0.8905 -6.3288 46 1 1.6181 1.3562 -7.3237 47 1 3.3821 1.1500 -7.2044 48 1 1.5914 -0.6202 -8.7371 49 1 2.5628 0.5621 -9.3890 50 1 0.8117 0.5383 -2.3983 51 1 2.5276 0.9720 -2.3753 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -31.614814 kcal Electronic energy + Delta-G solvation = -23729.214833 eV Core-core repulsion = 20661.842892 eV Total energy + Delta-G solvation = -3067.371942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58672 -36.97947 -35.38904 -33.44331 -33.12230 -31.21612 -29.73843 -28.95499 -26.25985 -25.33674 -24.79112 -23.57376 -21.55170 -20.98561 -20.32198 -19.56423 -18.49900 -16.30290 -16.23532 -16.06164 -15.49740 -15.14931 -14.59219 -14.36574 -14.32040 -13.91505 -13.70603 -13.17150 -12.97461 -12.66067 -12.62334 -12.34363 -12.26606 -11.90169 -11.79951 -11.48436 -11.38222 -11.20201 -11.07087 -10.88860 -10.84558 -10.61887 -10.42609 -10.34336 -10.19442 -10.00853 -9.96235 -9.88067 -9.50246 -9.14540 -9.00679 -8.84253 -8.19209 -7.53803 -5.85421 -3.86392 3.38786 3.44927 3.48022 4.13247 4.37554 4.56425 4.69125 4.88141 4.92875 5.03769 5.19538 5.31053 5.36904 5.42175 5.43355 5.49956 5.55139 5.59714 5.60455 5.66180 5.71647 5.76913 5.82602 5.91861 5.97333 6.00629 6.08975 6.15710 6.20905 6.23997 6.31685 6.35994 6.46082 6.52343 6.52545 6.65457 6.72721 6.75471 6.81456 6.90319 7.01797 7.09937 7.34928 7.71623 7.84419 7.88716 8.11967 8.27536 8.60966 9.22678 9.75995 11.25440 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.003679 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.458438 B = 7608.331932 C = 8109.000929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.074 0.926 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.517 4.517 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.526 5.526 15 C 0.069 3.931 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.080 4.080 20 H 0.060 0.940 21 C -0.113 4.113 22 C -0.118 4.118 23 C 0.059 3.941 24 N -0.854 5.854 25 C 0.068 3.932 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.007 0.993 33 H 0.257 0.743 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.023 0.977 47 H 0.072 0.928 48 H 0.339 0.661 49 H 0.340 0.660 50 H 0.025 0.975 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 1.385 -17.098 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.092 0.908 4 C -0.140 4.140 5 C -0.005 4.005 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.250 5.250 15 C -0.060 4.060 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.099 4.099 20 H 0.078 0.922 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.071 4.071 24 N -0.383 5.383 25 C -0.060 4.060 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.090 0.910 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.043 0.957 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.260 0.987 -16.783 19.695 hybrid contribution -1.346 0.262 0.569 1.485 sum -11.606 1.249 -16.214 19.979 Atomic orbital electron populations 1.22529 0.99070 1.01529 1.01105 1.21843 0.90781 0.98504 0.91185 0.90796 1.21738 1.00847 0.98281 0.93093 1.18978 0.88074 0.96530 0.96940 1.21342 0.91795 1.33976 1.08484 0.93235 1.24984 0.97157 0.95791 0.96423 1.69979 1.02113 1.44327 1.36915 0.86712 0.78272 0.79863 0.83821 1.20820 1.21386 1.20103 1.60775 1.60375 1.02178 1.01636 1.21736 0.94729 0.89522 1.00003 1.20521 1.01319 0.97894 0.96077 1.20504 1.00036 0.97028 0.96923 1.21471 0.97793 0.94603 1.01088 1.20934 0.99009 0.96383 0.93554 0.92181 1.21604 1.02059 0.97945 0.93550 1.21653 1.02370 0.98366 0.93236 1.21846 1.00550 0.95343 0.89377 1.58708 1.44943 1.30471 1.04149 1.22394 0.98805 0.95830 0.88937 0.93643 0.92460 0.92780 0.93513 0.93310 0.94871 0.97457 0.93285 0.91058 0.95353 0.89895 0.93128 0.92791 0.93563 0.90313 0.92189 0.92480 0.91472 0.90487 0.92527 0.95856 0.90981 0.84915 0.84851 0.95726 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.70 37.16 0.32 -2.28 16 2 C 0.08 1.46 2.27 -67.71 -0.15 1.30 16 3 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 4 C -0.10 -2.11 4.53 -26.73 -0.12 -2.24 16 5 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 10 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.53 -8.63 3.38 -226.65 -0.77 -9.40 16 15 C 0.07 1.05 3.93 -4.70 -0.02 1.03 16 16 C -0.12 -1.86 5.37 -29.59 -0.16 -2.02 16 17 C -0.11 -1.43 5.34 -29.31 -0.16 -1.59 16 18 C -0.11 -1.48 5.00 -27.16 -0.14 -1.61 16 19 C -0.08 -0.96 1.67 -91.37 -0.15 -1.11 16 20 H 0.06 0.72 6.64 -51.93 -0.34 0.37 16 21 C -0.11 -1.14 4.49 -26.73 -0.12 -1.26 16 22 C -0.12 -1.09 5.26 -26.72 -0.14 -1.23 16 23 C 0.06 0.50 6.79 -3.82 -0.03 0.47 16 24 N -0.85 -6.66 9.62 -10.37 -0.10 -6.76 16 25 C 0.07 0.94 4.64 -2.77 -0.01 0.93 16 26 H 0.04 0.59 6.63 -51.93 -0.34 0.25 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.01 6.28 -51.93 -0.33 0.68 16 31 H 0.03 0.93 7.75 -51.93 -0.40 0.52 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 1.15 4.92 -51.93 -0.26 0.90 16 35 H 0.03 0.40 6.79 -51.93 -0.35 0.04 16 36 H 0.08 1.58 8.08 -51.93 -0.42 1.16 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.56 7.59 -51.93 -0.39 0.17 16 40 H 0.08 1.26 7.78 -51.93 -0.40 0.86 16 41 H 0.06 0.72 5.74 -51.93 -0.30 0.42 16 42 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.80 6.20 -51.93 -0.32 0.48 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.34 2.25 8.99 -39.29 -0.35 1.90 16 49 H 0.34 2.08 9.08 -39.29 -0.36 1.72 16 50 H 0.02 0.33 6.40 -51.93 -0.33 -0.01 16 51 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -30.28 373.41 -10.79 -41.07 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -9.84 Total: 1.56 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -1.42 Total: -22.57 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.13 Total: -42.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.28 -10.79 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.454 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds