Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47009 * 2 1 4 4 C 1.52991 * 109.47458 * 120.00086 * 2 1 3 5 5 C 1.53005 * 109.47363 * 184.99835 * 4 2 1 6 6 C 1.50698 * 109.47118 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00238 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99894 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99918 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99970 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47448 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46951 * 119.99793 * 10 8 6 13 13 H 1.48502 * 109.47238 * 239.99894 * 10 8 6 14 14 N 1.46902 * 109.46968 * 240.00258 * 2 1 3 15 15 C 1.46902 * 111.00071 * 109.81065 * 14 2 1 16 16 C 1.52996 * 109.47221 * 274.56972 * 15 14 2 17 17 C 1.53007 * 109.47009 * 300.00124 * 16 15 14 18 18 C 1.53000 * 109.47104 * 299.99699 * 17 16 15 19 19 C 1.53001 * 109.46876 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46910 * 65.00725 * 19 18 17 21 21 C 1.46902 * 111.00299 * 66.04223 * 20 19 18 22 22 C 1.46898 * 110.99861 * 189.99783 * 20 19 18 23 23 C 1.53004 * 109.47066 * 60.00113 * 18 17 16 24 24 C 1.52995 * 109.47004 * 300.00209 * 23 18 17 25 25 H 1.08998 * 109.47335 * 65.30030 * 1 2 3 26 26 H 1.08999 * 109.47078 * 185.30164 * 1 2 3 27 27 H 1.09000 * 109.46991 * 305.29897 * 1 2 3 28 28 H 1.08998 * 109.47555 * 305.00164 * 4 2 1 29 29 H 1.09005 * 109.47625 * 65.00192 * 4 2 1 30 30 H 1.08991 * 109.46960 * 299.99941 * 5 4 2 31 31 H 1.08998 * 109.46925 * 60.00351 * 5 4 2 32 32 H 0.97000 * 119.99891 * 180.02562 * 9 8 6 33 33 H 1.00899 * 110.99995 * 233.76390 * 14 2 1 34 34 H 1.08991 * 109.47225 * 34.56961 * 15 14 2 35 35 H 1.09003 * 109.46995 * 59.99930 * 16 15 14 36 36 H 1.08997 * 109.47376 * 180.02562 * 16 15 14 37 37 H 1.09001 * 109.47108 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.46975 * 59.99848 * 17 16 15 39 39 H 1.08997 * 109.47327 * 299.99934 * 18 17 16 40 40 H 1.09004 * 109.46708 * 184.99656 * 19 18 17 41 41 H 1.08992 * 109.47645 * 305.00076 * 19 18 17 42 42 H 1.08993 * 109.47212 * 59.99909 * 21 20 19 43 43 H 1.09001 * 109.46731 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.46628 * 299.99771 * 21 20 19 45 45 H 1.08998 * 109.47555 * 59.99251 * 22 20 19 46 46 H 1.08999 * 109.47303 * 179.97438 * 22 20 19 47 47 H 1.09005 * 109.47099 * 299.99678 * 22 20 19 48 48 H 1.08995 * 109.47471 * 179.97438 * 23 18 17 49 49 H 1.08998 * 109.46678 * 59.99682 * 23 18 17 50 50 H 1.09006 * 109.47250 * 299.99504 * 24 23 18 51 51 H 1.08998 * 109.47522 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0672 -1.3231 2.5443 7 1 3.3687 -1.8029 3.2138 8 6 5.4185 -1.3592 2.8161 9 7 6.2689 -0.7737 2.0016 10 14 6.0411 -2.2385 4.3421 11 1 4.8912 -2.8103 5.0878 12 1 6.9635 -3.3314 3.9419 13 1 6.7636 -1.2736 5.2093 14 7 2.0196 -0.6925 -1.1995 15 6 2.6333 0.2543 -2.1403 16 6 1.5483 0.8660 -3.0288 17 6 0.8428 -0.2444 -3.8100 18 6 1.8615 -0.9804 -4.6826 19 6 1.1561 -2.0912 -5.4633 20 7 0.1973 -1.4958 -6.4036 21 6 0.8901 -0.7234 -7.4435 22 6 -0.6647 -2.5256 -6.9990 23 6 2.9466 -1.5922 -3.7941 24 6 3.6520 -0.4819 -3.0129 25 1 -0.3634 0.4294 -0.9336 26 1 -0.3633 -1.0233 0.0950 27 1 -0.3633 0.5938 0.8387 28 1 1.6055 -0.2618 2.1369 29 1 1.7517 -1.7716 1.2055 30 1 3.9994 -1.0728 0.4259 31 1 3.8532 0.4370 1.3572 32 1 7.2195 -0.7994 2.1926 33 1 2.6651 -1.4281 -0.9541 34 1 3.1359 1.0453 -1.5838 35 1 0.8226 1.3904 -2.4071 36 1 2.0037 1.5681 -3.7271 37 1 0.0702 0.1915 -4.4433 38 1 0.3875 -0.9468 -3.1119 39 1 2.3168 -0.2780 -5.3807 40 1 1.8945 -2.6718 -6.0163 41 1 0.6267 -2.7436 -4.7689 42 1 1.5610 -1.3800 -7.9974 43 1 0.1568 -0.2934 -8.1257 44 1 1.4663 0.0765 -6.9786 45 1 -1.2187 -3.0358 -6.2111 46 1 -1.3652 -2.0576 -7.6906 47 1 -0.0501 -3.2474 -7.5369 48 1 3.6720 -2.1170 -4.4156 49 1 2.4911 -2.2946 -3.0960 50 1 4.1074 0.2206 -3.7109 51 1 4.4246 -0.9176 -2.3795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -32.130562 kcal Electronic energy + Delta-G solvation = -23621.178572 eV Core-core repulsion = 20553.784266 eV Total energy + Delta-G solvation = -3067.394306 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.37847 -37.51614 -35.68155 -33.07063 -31.74672 -30.53999 -29.41513 -28.31317 -27.76206 -25.76479 -24.91025 -22.68173 -22.09283 -21.39873 -20.32442 -19.62318 -18.82118 -16.33933 -15.73897 -15.49972 -15.36270 -14.90687 -14.77334 -14.62560 -14.43948 -13.62524 -13.19020 -13.07386 -12.81682 -12.57583 -12.53772 -12.40779 -12.12317 -11.92743 -11.87911 -11.75148 -11.56485 -11.40473 -11.34060 -11.13593 -11.01168 -10.84294 -10.70953 -10.47430 -10.19179 -10.14741 -9.84050 -9.66971 -9.64118 -9.26164 -9.01996 -8.45958 -8.36386 -7.78563 -6.01000 -4.02940 3.30053 3.37754 3.42120 3.83128 4.45466 4.64936 4.85254 4.95277 4.96975 5.10868 5.17431 5.26356 5.31630 5.34967 5.44823 5.54833 5.57235 5.63684 5.66000 5.68334 5.72124 5.80641 5.84569 5.86451 5.89816 5.94373 6.01216 6.12196 6.21658 6.28668 6.33700 6.43950 6.46505 6.51706 6.57466 6.62986 6.65889 6.70459 6.83647 6.91158 6.94660 6.94818 7.12998 7.64840 7.66263 7.84947 7.97423 8.06555 8.42760 9.04238 9.61340 11.10062 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.003391 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.985894 B = 8254.517726 C = 8650.755068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.048 0.952 4 C -0.124 4.124 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.674 5.674 15 C 0.089 3.911 16 C -0.105 4.105 17 C -0.092 4.092 18 C -0.078 4.078 19 C 0.060 3.940 20 N -0.543 5.543 21 C 0.022 3.978 22 C 0.025 3.975 23 C -0.106 4.106 24 C -0.120 4.120 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.347 0.653 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.021 0.979 48 H 0.049 0.951 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 0.117 -17.533 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.066 0.934 4 C -0.163 4.163 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.308 5.308 15 C -0.021 4.021 16 C -0.144 4.144 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.068 4.068 20 N -0.267 5.267 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.158 4.158 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.726 0.471 -17.608 21.160 hybrid contribution 1.941 -0.793 0.834 2.256 sum -9.786 -0.322 -16.774 19.422 Atomic orbital electron populations 1.21811 0.95972 1.01167 1.00143 1.21686 0.94457 0.96697 0.89997 0.93400 1.22038 0.99718 0.99183 0.95316 1.19106 0.88761 0.96796 0.96820 1.21295 0.91919 1.34139 1.08320 0.92712 1.25022 0.97116 0.95641 0.96671 1.69969 1.02278 1.44178 1.37033 0.86566 0.78854 0.79477 0.83293 1.19748 1.21040 1.21068 1.60658 1.42821 1.13142 1.14195 1.21526 0.93294 0.93987 0.93299 1.21550 0.97806 0.97355 0.97639 1.21291 0.96795 0.97575 0.97268 1.21135 0.95857 0.96301 0.96383 1.22238 0.93529 0.96417 0.94620 1.61962 1.22376 1.25277 1.17083 1.22423 0.98005 0.98160 0.94038 1.22368 0.96830 0.93854 0.99320 1.21447 0.96829 0.98073 0.98110 1.21680 0.97599 0.97892 0.98593 0.93194 0.92976 0.93694 0.92972 0.92827 0.96765 0.97080 0.93138 0.83183 0.94017 0.92464 0.93126 0.92371 0.90752 0.92064 0.95339 0.90624 0.96000 0.91788 0.90956 0.91350 0.91655 0.96012 0.93183 0.90826 0.92174 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.52 37.16 0.35 -1.62 16 2 C 0.08 1.40 2.63 -67.72 -0.18 1.22 16 3 H 0.05 0.88 7.16 -51.93 -0.37 0.50 16 4 C -0.12 -2.55 4.53 -26.73 -0.12 -2.67 16 5 C 0.02 0.56 4.83 -27.88 -0.13 0.43 16 6 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.67 -10.84 4.66 -99.75 -0.46 -11.30 16 15 C 0.09 1.34 2.74 -67.71 -0.19 1.15 16 16 C -0.11 -1.38 5.54 -26.73 -0.15 -1.53 16 17 C -0.09 -1.13 4.93 -26.73 -0.13 -1.26 16 18 C -0.08 -0.88 2.11 -90.62 -0.19 -1.07 16 19 C 0.06 0.63 4.35 -3.82 -0.02 0.61 16 20 N -0.54 -5.45 4.47 -251.26 -1.12 -6.58 16 21 C 0.02 0.19 9.33 60.07 0.56 0.75 16 22 C 0.02 0.21 9.57 60.06 0.57 0.78 16 23 C -0.11 -1.32 5.04 -26.73 -0.13 -1.46 16 24 C -0.12 -1.68 5.30 -26.73 -0.14 -1.82 16 25 H 0.05 0.70 7.09 -51.93 -0.37 0.33 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.01 0.37 6.83 -51.93 -0.35 0.02 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.35 6.23 6.19 -39.29 -0.24 5.98 16 34 H 0.04 0.72 7.38 -51.93 -0.38 0.33 16 35 H 0.06 0.78 7.03 -51.93 -0.37 0.41 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 38 H 0.07 1.03 7.60 -51.93 -0.39 0.63 16 39 H 0.06 0.69 6.34 -51.93 -0.33 0.36 16 40 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 42 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 44 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 45 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 46 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -28.66 381.59 -10.65 -39.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -10.23 Total: 2.04 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -0.30 Total: -19.92 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.85 Total: -43.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.66 -10.65 -39.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.187 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds