Wall clock time and date at job start Tue Mar 31 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47387 * 2 1 4 4 C 1.53005 * 109.47009 * 240.00020 * 2 1 3 5 5 C 1.52997 * 109.47037 * 175.00336 * 4 2 1 6 6 C 1.50705 * 109.46970 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99675 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99771 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00482 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99780 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47200 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47150 * 120.00133 * 10 8 6 13 13 H 1.48500 * 109.47458 * 240.00249 * 10 8 6 14 14 N 1.46900 * 109.47209 * 120.00422 * 2 1 3 15 15 C 1.46898 * 110.99803 * 274.99986 * 14 2 1 16 16 C 1.53006 * 109.47094 * 274.99788 * 15 14 2 17 17 C 1.52996 * 109.47390 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.46889 * 60.00135 * 17 16 15 19 19 C 1.53005 * 109.47057 * 180.02562 * 18 17 16 20 20 N 1.46897 * 109.46961 * 296.16420 * 19 18 17 21 21 C 1.46904 * 111.00157 * 163.83080 * 20 19 18 22 22 C 1.46901 * 110.99799 * 287.78223 * 20 19 18 23 23 C 1.52997 * 109.47177 * 299.99733 * 18 17 16 24 24 C 1.52996 * 109.46994 * 60.00331 * 23 18 17 25 25 H 1.09002 * 109.47098 * 299.99937 * 1 2 3 26 26 H 1.09002 * 109.47371 * 59.99561 * 1 2 3 27 27 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46771 * 295.00505 * 4 2 1 29 29 H 1.08995 * 109.46710 * 54.99839 * 4 2 1 30 30 H 1.09000 * 109.46993 * 299.99629 * 5 4 2 31 31 H 1.09004 * 109.47200 * 60.00136 * 5 4 2 32 32 H 0.97000 * 120.00060 * 180.02562 * 9 8 6 33 33 H 1.00898 * 111.00271 * 38.94895 * 14 2 1 34 34 H 1.09003 * 109.47726 * 34.99544 * 15 14 2 35 35 H 1.08998 * 109.46857 * 60.00049 * 16 15 14 36 36 H 1.09003 * 109.46635 * 300.00425 * 16 15 14 37 37 H 1.09000 * 109.46913 * 300.00131 * 17 16 15 38 38 H 1.08998 * 109.47018 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47346 * 60.00261 * 18 17 16 40 40 H 1.09007 * 109.46860 * 56.16084 * 19 18 17 41 41 H 1.08999 * 109.47364 * 176.16354 * 19 18 17 42 42 H 1.09004 * 109.46741 * 59.99551 * 21 20 19 43 43 H 1.08991 * 109.47278 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.46570 * 299.99799 * 21 20 19 45 45 H 1.08996 * 109.47355 * 67.23257 * 22 20 19 46 46 H 1.09003 * 109.47250 * 187.23153 * 22 20 19 47 47 H 1.08994 * 109.47415 * 307.22816 * 22 20 19 48 48 H 1.09000 * 109.47744 * 180.02562 * 23 18 17 49 49 H 1.09000 * 109.47414 * 300.00487 * 23 18 17 50 50 H 1.09003 * 109.47601 * 60.00120 * 24 23 18 51 51 H 1.09007 * 109.47084 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5446 7 1 3.3685 -1.8037 -3.2136 8 6 5.4182 -1.3594 -2.8164 9 7 6.2688 -0.7748 -2.0014 10 14 6.0408 -2.2399 -4.3416 11 1 4.8908 -2.8114 -5.0874 12 1 6.7631 -1.2756 -5.2098 13 1 6.9634 -3.3323 -3.9407 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 3.4112 0.9808 2.3224 17 6 3.4764 1.9343 3.5171 18 6 3.3707 1.1324 4.8159 19 6 3.4352 2.0860 6.0107 20 7 4.7468 2.7468 6.0394 21 6 4.7227 3.9270 6.9138 22 6 5.8000 1.8087 6.4502 23 6 2.0420 0.3742 4.8404 24 6 1.9768 -0.5793 3.6457 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1369 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0730 -0.4260 32 1 7.2194 -0.7999 -2.1929 33 1 1.4496 -1.4980 1.4100 34 1 1.2577 0.9329 2.2907 35 1 3.4863 1.5523 1.3973 36 1 4.2360 0.2703 2.3785 37 1 2.6515 2.6446 3.4604 38 1 4.4231 2.4741 3.4999 39 1 4.1955 0.4221 4.8725 40 1 2.6514 2.8379 5.9181 41 1 3.2917 1.5231 6.9330 42 1 4.4623 3.6227 7.9276 43 1 5.7061 4.3969 6.9172 44 1 3.9818 4.6367 6.5458 45 1 5.9300 1.0484 5.6801 46 1 6.7359 2.3505 6.5874 47 1 5.5158 1.3313 7.3879 48 1 1.9664 -0.1967 5.7659 49 1 1.2172 1.0845 4.7838 50 1 2.8016 -1.2897 3.7023 51 1 1.0300 -1.1192 3.6629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:47 Heat of formation + Delta-G solvation = -32.815713 kcal Electronic energy + Delta-G solvation = -23274.258501 eV Core-core repulsion = 20206.834485 eV Total energy + Delta-G solvation = -3067.424017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.32085 -37.54764 -35.85616 -33.14191 -31.80487 -30.56443 -29.55257 -28.22444 -27.74830 -25.50980 -24.84951 -22.75309 -22.20791 -21.16452 -20.33200 -19.65989 -19.37422 -16.05892 -15.79423 -15.64514 -15.41313 -15.10349 -14.61031 -14.33979 -14.24904 -13.79370 -13.46631 -13.23384 -12.91272 -12.66071 -12.50971 -12.39382 -12.27454 -11.96232 -11.86673 -11.84228 -11.68088 -11.46419 -11.28239 -11.09632 -10.90633 -10.83004 -10.71572 -10.39598 -10.37698 -10.14656 -9.92543 -9.79792 -9.51038 -9.12758 -8.80734 -8.48357 -8.17076 -7.73476 -5.82429 -3.83196 3.39895 3.47030 3.51250 3.78269 4.47046 4.59087 4.75262 4.83937 4.92604 5.00512 5.13965 5.17164 5.30295 5.39177 5.41504 5.46177 5.52011 5.52913 5.57484 5.58023 5.64454 5.66848 5.71240 5.73295 5.75304 5.79267 5.83988 5.95439 6.08830 6.13111 6.28750 6.31347 6.34259 6.39025 6.51085 6.61279 6.65484 6.79602 6.86074 6.88424 6.90192 6.98575 7.40980 7.68725 7.91964 7.97324 8.16257 8.31867 8.64872 9.26296 9.79037 11.28508 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003632 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.238752 B = 7707.035612 C = 8950.112775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.669 5.669 15 C 0.092 3.908 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.082 4.082 19 C 0.060 3.940 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.022 3.978 23 C -0.108 4.108 24 C -0.118 4.118 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.332 0.668 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.021 0.979 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 6.258 19.046 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.299 5.299 15 C -0.018 4.018 16 C -0.146 4.146 17 C -0.140 4.140 18 C -0.101 4.101 19 C -0.068 4.068 20 N -0.267 5.267 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.156 4.156 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.302 6.532 18.425 20.868 hybrid contribution -0.718 -0.645 0.182 0.982 sum -8.021 5.887 18.607 21.100 Atomic orbital electron populations 1.22539 0.98902 1.01352 1.01076 1.21746 0.90632 0.98394 0.91749 0.91078 1.21621 1.00648 0.98261 0.93073 1.18982 0.88270 0.96412 0.96936 1.21404 0.91826 1.33855 1.08444 0.93166 1.24991 0.97166 0.95843 0.96451 1.69990 1.02038 1.44504 1.36819 0.86654 0.78799 0.79548 0.83660 1.19939 1.21218 1.21169 1.60545 1.57482 1.08876 1.02993 1.21480 0.97059 0.93774 0.89471 1.21542 0.97379 0.98048 0.97582 1.21458 1.02140 0.97348 0.93014 1.21169 0.97624 0.96595 0.94715 1.22241 0.90465 0.96883 0.97207 1.61924 1.05111 1.08036 1.51663 1.22386 1.02538 0.93252 0.94165 1.22442 0.94722 0.96374 0.99040 1.21496 0.97298 0.98102 0.97805 1.21678 1.01755 0.98094 0.94082 0.93855 0.92439 0.92919 0.93631 0.93769 0.97551 0.94849 0.93374 0.84958 0.94815 0.91828 0.91104 0.93111 0.90808 0.90990 0.91114 0.95076 0.96071 0.91448 0.91463 0.90781 0.91613 0.95875 0.92433 0.92307 0.91010 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.15 37.16 0.34 -2.20 16 2 C 0.08 1.47 2.40 -67.71 -0.16 1.30 16 3 H 0.07 1.31 7.11 -51.93 -0.37 0.94 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 6 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 10 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 N -0.67 -11.02 5.51 -99.73 -0.55 -11.57 16 15 C 0.09 1.30 2.30 -67.71 -0.16 1.15 16 16 C -0.11 -1.67 5.41 -26.73 -0.14 -1.81 16 17 C -0.10 -1.30 5.08 -26.73 -0.14 -1.43 16 18 C -0.08 -0.90 2.19 -90.62 -0.20 -1.10 16 19 C 0.06 0.58 4.38 -3.82 -0.02 0.57 16 20 N -0.54 -5.54 4.38 -251.26 -1.10 -6.64 16 21 C 0.02 0.21 9.52 60.07 0.57 0.78 16 22 C 0.02 0.21 9.36 60.07 0.56 0.77 16 23 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 24 C -0.12 -1.40 5.20 -26.73 -0.14 -1.54 16 25 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.33 5.00 8.09 -39.29 -0.32 4.68 16 34 H 0.03 0.47 7.11 -51.93 -0.37 0.11 16 35 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 39 H 0.07 0.86 6.79 -51.93 -0.35 0.51 16 40 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 41 H 0.03 0.29 7.92 -51.93 -0.41 -0.12 16 42 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 44 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 45 H 0.07 0.75 6.94 -51.93 -0.36 0.39 16 46 H 0.07 0.56 7.99 -51.93 -0.41 0.15 16 47 H 0.02 0.20 7.96 -51.93 -0.41 -0.21 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.06 0.60 8.12 -51.92 -0.42 0.18 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -30.92 386.52 -10.85 -41.77 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -10.45 Total: 0.49 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.29 Total: -20.23 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.91 Total: -45.22 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.92 -10.85 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.955 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds