Wall clock time and date at job start Tue Mar 31 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47325 * 2 1 4 4 C 1.46900 * 111.00102 * 199.89835 * 3 2 1 5 5 C 1.53004 * 109.46723 * 72.27508 * 4 3 2 6 6 N 1.46906 * 109.47025 * 185.34078 * 5 4 3 7 7 C 1.46846 * 110.99874 * 294.21172 * 6 5 4 8 8 C 1.53035 * 109.52190 * 174.16152 * 7 6 5 9 9 C 1.53125 * 109.27940 * 59.17483 * 8 7 6 10 10 C 1.53118 * 109.16228 * 302.34816 * 9 8 7 11 11 C 1.46846 * 110.99824 * 169.99772 * 6 5 4 12 12 C 1.46907 * 110.99702 * 75.94981 * 3 2 1 13 13 H 1.08998 * 109.46907 * 314.77362 * 12 3 2 14 14 C 1.53001 * 109.47085 * 74.77869 * 12 3 2 15 15 C 1.53001 * 109.46748 * 194.77743 * 12 3 2 16 16 C 1.52997 * 109.47581 * 63.08227 * 15 12 3 17 17 C 1.50696 * 109.47219 * 184.24455 * 16 15 12 18 18 H 1.07994 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99584 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99574 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00389 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47276 * 89.99856 * 21 19 17 23 23 H 1.48494 * 109.47596 * 210.00403 * 21 19 17 24 24 H 1.48507 * 109.47029 * 329.99922 * 21 19 17 25 25 H 1.09002 * 109.46592 * 301.25826 * 1 2 3 26 26 H 1.09005 * 109.46924 * 61.25152 * 1 2 3 27 27 H 1.08998 * 109.47105 * 181.25511 * 1 2 3 28 28 H 1.09001 * 109.46965 * 240.00024 * 2 1 3 29 29 H 1.09004 * 109.47471 * 120.00444 * 2 1 3 30 30 H 1.09005 * 109.47358 * 192.27109 * 4 3 2 31 31 H 1.08993 * 109.47287 * 312.27667 * 4 3 2 32 32 H 1.08996 * 109.47184 * 305.34088 * 5 4 3 33 33 H 1.08996 * 109.47165 * 65.34279 * 5 4 3 34 34 H 1.09002 * 109.46295 * 294.17452 * 7 6 5 35 35 H 1.09000 * 109.46649 * 54.14457 * 7 6 5 36 36 H 1.08997 * 109.50324 * 299.23433 * 8 7 6 37 37 H 1.09000 * 109.50789 * 179.11762 * 8 7 6 38 38 H 1.08999 * 109.52047 * 182.44215 * 9 8 7 39 39 H 1.09001 * 109.51749 * 62.25036 * 9 8 7 40 40 H 1.09006 * 109.49847 * 297.71166 * 10 9 8 41 41 H 1.08994 * 109.50191 * 177.59582 * 10 9 8 42 42 H 1.09003 * 109.46550 * 305.85559 * 11 6 5 43 43 H 1.09001 * 109.45942 * 65.82660 * 11 6 5 44 44 H 1.09000 * 109.46706 * 179.97438 * 14 12 3 45 45 H 1.08998 * 109.47662 * 59.99954 * 14 12 3 46 46 H 1.09002 * 109.46567 * 299.99664 * 14 12 3 47 47 H 1.09010 * 109.46697 * 183.08600 * 15 12 3 48 48 H 1.09006 * 109.47191 * 303.07765 * 15 12 3 49 49 H 1.08997 * 109.46755 * 304.25222 * 16 15 12 50 50 H 1.09004 * 109.46542 * 64.24502 * 16 15 12 51 51 H 0.96998 * 119.99753 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4110 1.4514 -0.4668 5 6 3.4558 1.1945 -1.9744 6 7 4.8546 1.1340 -2.4194 7 6 5.5138 2.4367 -2.2618 8 6 7.0010 2.3010 -2.5960 9 6 7.1522 1.8022 -4.0358 10 6 6.4160 0.4680 -4.1854 11 6 4.9457 0.6568 -3.8052 12 6 1.8813 1.9922 1.3305 13 1 0.8952 1.7623 1.7340 14 6 2.9573 1.4306 2.2619 15 6 2.0452 3.5093 1.2181 16 6 0.9235 4.0806 0.3486 17 6 1.1434 5.5584 0.1519 18 1 1.9979 6.0417 0.6018 19 6 0.2534 6.2934 -0.6023 20 7 0.4456 7.5830 -0.7744 21 14 -1.2251 5.4575 -1.3798 22 1 -2.3714 5.5017 -0.4368 23 1 -1.5892 6.1626 -2.6349 24 1 -0.8901 4.0435 -1.6859 25 1 -0.3632 0.5333 0.8785 26 1 -0.3633 0.4943 -0.9010 27 1 -0.3633 -1.0274 0.0225 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8187 2.4398 -0.2544 31 1 4.0036 0.6955 0.0484 32 1 2.9626 0.2482 -2.1966 33 1 2.9433 2.0027 -2.4961 34 1 5.0546 3.1599 -2.9358 35 1 5.4024 2.7780 -1.2327 36 1 7.4638 1.5882 -1.9134 37 1 7.4870 3.2713 -2.4941 38 1 8.2090 1.6627 -4.2638 39 1 6.7240 2.5334 -4.7214 40 1 6.8696 -0.2737 -3.5278 41 1 6.4840 0.1288 -5.2190 42 1 4.4218 -0.2947 -3.8969 43 1 4.4893 1.3884 -4.4719 44 1 2.8548 1.8815 3.2490 45 1 3.9434 1.6605 1.8584 46 1 2.8404 0.3498 2.3419 47 1 1.9972 3.9545 2.2120 48 1 3.0094 3.7379 0.7639 49 1 0.9244 3.5809 -0.6201 50 1 -0.0358 3.9182 0.8402 51 1 -0.1803 8.1000 -1.3053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:34 Heat of formation + Delta-G solvation = -15.260403 kcal Electronic energy + Delta-G solvation = -23966.539009 eV Core-core repulsion = 20899.876248 eV Total energy + Delta-G solvation = -3066.662761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.32157 -38.25965 -34.16683 -33.42789 -32.09651 -30.94981 -30.34659 -29.52918 -26.94724 -25.34083 -24.10589 -23.05376 -22.44026 -21.43956 -20.43699 -19.70783 -18.68902 -16.65862 -16.24550 -15.75787 -15.28039 -14.83135 -14.51510 -14.23090 -14.18198 -14.09783 -13.75166 -13.32483 -12.97397 -12.91642 -12.65433 -12.59586 -12.34537 -12.18485 -11.86211 -11.70223 -11.51800 -11.35862 -11.25438 -11.17936 -11.10057 -10.87040 -10.72484 -10.52777 -10.38304 -10.28173 -10.06607 -9.69832 -9.60891 -9.41897 -8.98489 -8.41944 -8.26279 -7.82711 -5.93689 -3.89371 3.38960 3.45935 3.54447 3.75976 4.39150 4.56617 4.75532 4.78462 4.87329 5.07547 5.16339 5.23658 5.34715 5.39805 5.42392 5.45095 5.46982 5.47370 5.58263 5.58994 5.64993 5.68744 5.71899 5.80390 5.83205 5.87338 5.88697 5.93539 6.04900 6.09421 6.12227 6.17304 6.19350 6.24223 6.25403 6.30422 6.33433 6.48543 6.59569 6.74061 7.09883 7.12669 7.16765 7.47015 7.51877 7.58575 7.76744 7.95776 8.66824 9.12671 9.70895 11.20210 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.005231 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.974175 B = 5351.838946 C = 6355.911180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 N -0.524 5.524 4 C 0.061 3.939 5 C 0.059 3.941 6 N -0.539 5.539 7 C 0.050 3.950 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.056 3.944 12 C 0.079 3.921 13 H 0.077 0.923 14 C -0.182 4.182 15 C -0.092 4.092 16 C -0.006 4.006 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.064 3.936 20 N -0.910 5.910 21 Si 0.877 3.123 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.260 1.260 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.032 0.968 50 H 0.003 0.997 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 -17.589 -2.918 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 N -0.248 5.248 4 C -0.067 4.067 5 C -0.069 4.069 6 N -0.264 5.264 7 C -0.077 4.077 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.153 4.153 11 C -0.072 4.072 12 C -0.029 4.029 13 H 0.096 0.904 14 C -0.241 4.241 15 C -0.130 4.130 16 C -0.043 4.043 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.550 5.550 21 Si 0.705 3.295 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.185 1.185 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.021 0.979 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.592 -17.501 -3.041 20.188 hybrid contribution -0.812 -0.094 -0.383 0.903 sum 8.780 -17.595 -3.424 19.960 Atomic orbital electron populations 1.21765 0.95253 1.00466 1.02916 1.22107 0.96016 0.89735 1.00152 1.62044 1.19949 1.16755 1.26018 1.22020 0.89015 1.01674 0.94006 1.22071 0.87548 1.01265 0.96038 1.61906 1.15686 1.27579 1.21245 1.22155 0.94141 0.89594 1.01855 1.21580 0.96011 1.01210 0.96567 1.21585 1.00027 0.97164 0.97188 1.21567 0.95135 0.97830 1.00729 1.22046 0.96765 0.99742 0.88657 1.21902 0.97994 0.96588 0.86461 0.90446 1.22475 1.00562 1.00274 1.00818 1.21516 1.00766 0.90599 1.00094 1.19466 0.93004 0.95940 0.95906 1.21253 1.10760 0.92035 1.31243 0.91493 1.25011 0.97838 0.94622 0.96090 1.69932 1.37523 1.06451 1.41086 0.86801 0.83329 0.80612 0.78780 1.20591 1.21800 1.18467 0.92596 0.91955 0.93106 0.91396 0.95040 0.90154 0.94380 0.91177 0.93619 0.94505 0.90260 0.91359 0.91604 0.92097 0.92281 0.91304 0.91894 0.91117 0.94941 0.92304 0.92434 0.93462 0.92923 0.92906 0.94951 0.97910 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.04 37.16 0.37 -1.53 16 2 C 0.05 0.63 5.44 -3.83 -0.02 0.61 16 3 N -0.52 -8.18 3.60 -226.64 -0.82 -8.99 16 4 C 0.06 0.89 3.32 -3.82 -0.01 0.88 16 5 C 0.06 0.82 5.09 -3.82 -0.02 0.80 16 6 N -0.54 -6.87 4.66 -234.67 -1.09 -7.96 16 7 C 0.05 0.65 5.29 -3.84 -0.02 0.63 16 8 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 9 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 10 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 11 C 0.06 0.63 5.46 -3.84 -0.02 0.60 16 12 C 0.08 1.27 2.21 -67.71 -0.15 1.12 16 13 H 0.08 1.27 6.55 -51.93 -0.34 0.93 16 14 C -0.18 -2.48 8.43 37.16 0.31 -2.16 16 15 C -0.09 -1.83 4.61 -26.73 -0.12 -1.95 16 16 C -0.01 -0.14 3.97 -27.89 -0.11 -0.25 16 17 C -0.51 -14.99 9.66 -34.44 -0.33 -15.33 16 18 H 0.07 2.09 7.99 -52.49 -0.42 1.68 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.78 13.96 55.43 0.77 -28.01 16 21 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 24 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 25 H 0.05 0.77 6.74 -51.93 -0.35 0.42 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 29 H 0.03 0.39 6.47 -51.93 -0.34 0.06 16 30 H 0.08 1.30 4.64 -51.93 -0.24 1.06 16 31 H 0.04 0.53 7.18 -51.93 -0.37 0.16 16 32 H 0.07 0.92 6.27 -51.93 -0.33 0.60 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.08 6.32 -51.93 -0.33 0.75 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.78 6.62 -51.93 -0.34 0.44 16 46 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 47 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 48 H 0.05 1.07 6.40 -51.93 -0.33 0.74 16 49 H 0.03 0.81 6.63 -51.93 -0.34 0.47 16 50 H 0.00 0.06 7.57 -51.93 -0.39 -0.33 16 51 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -30.78 372.04 -10.78 -41.56 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.87 Total: -1.31 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -0.71 Total: -18.73 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.14 Total: -44.96 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.78 -10.78 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.296 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds