Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.47211 * 2 1 4 4 C 1.46900 * 110.99572 * 282.95324 * 3 2 1 5 5 C 1.53004 * 109.47026 * 84.06899 * 4 3 2 6 6 N 1.46891 * 109.47361 * 183.09102 * 5 4 3 7 7 C 1.46853 * 110.99856 * 294.21048 * 6 5 4 8 8 C 1.53043 * 109.51965 * 174.16032 * 7 6 5 9 9 C 1.53118 * 109.28081 * 59.18008 * 8 7 6 10 10 C 1.53115 * 109.15825 * 302.34073 * 9 8 7 11 11 C 1.46848 * 111.00370 * 170.00075 * 6 5 4 12 12 C 1.46900 * 110.99990 * 159.00052 * 3 2 1 13 13 H 1.08997 * 109.46554 * 173.37381 * 12 3 2 14 14 C 1.52993 * 109.47111 * 53.37683 * 12 3 2 15 15 C 1.52995 * 109.47143 * 293.37116 * 12 3 2 16 16 C 1.53001 * 109.47537 * 294.03807 * 15 12 3 17 17 C 1.50696 * 109.46968 * 180.02562 * 16 15 12 18 18 H 1.07996 * 120.00707 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99628 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99954 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47104 * 60.00295 * 21 19 17 23 23 H 1.48507 * 109.47164 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47450 * 300.00137 * 21 19 17 25 25 H 1.08996 * 109.47069 * 316.23589 * 1 2 3 26 26 H 1.08993 * 109.46867 * 76.24225 * 1 2 3 27 27 H 1.09001 * 109.46485 * 196.24037 * 1 2 3 28 28 H 1.09001 * 109.47566 * 239.99583 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99547 * 2 1 3 30 30 H 1.08997 * 109.47526 * 324.07213 * 4 3 2 31 31 H 1.08993 * 109.46941 * 204.06434 * 4 3 2 32 32 H 1.08999 * 109.47370 * 63.08689 * 5 4 3 33 33 H 1.08999 * 109.46944 * 303.09359 * 5 4 3 34 34 H 1.08992 * 109.46223 * 294.17164 * 7 6 5 35 35 H 1.08998 * 109.46150 * 54.14425 * 7 6 5 36 36 H 1.08998 * 109.50246 * 299.23056 * 8 7 6 37 37 H 1.09002 * 109.49778 * 179.12315 * 8 7 6 38 38 H 1.08999 * 109.52039 * 182.43960 * 9 8 7 39 39 H 1.08992 * 109.52336 * 62.24849 * 9 8 7 40 40 H 1.08998 * 109.50728 * 297.71449 * 10 9 8 41 41 H 1.09005 * 109.50411 * 177.59707 * 10 9 8 42 42 H 1.09003 * 109.45966 * 305.85597 * 11 6 5 43 43 H 1.08994 * 109.46209 * 65.81904 * 11 6 5 44 44 H 1.09000 * 109.47264 * 59.99617 * 14 12 3 45 45 H 1.09002 * 109.47177 * 179.97438 * 14 12 3 46 46 H 1.09001 * 109.47566 * 299.99577 * 14 12 3 47 47 H 1.09000 * 109.47012 * 54.03794 * 15 12 3 48 48 H 1.09004 * 109.47081 * 174.03425 * 15 12 3 49 49 H 1.09000 * 109.46959 * 300.00019 * 16 15 12 50 50 H 1.08996 * 109.46660 * 59.99955 * 16 15 12 51 51 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9053 1.9838 -1.3366 5 6 0.4896 2.5305 -1.5310 6 7 0.3530 3.0627 -2.8933 7 6 1.2158 4.2347 -3.0894 8 6 1.1585 4.6725 -4.5547 9 6 -0.2879 5.0127 -4.9245 10 6 -1.1735 3.7907 -4.6655 11 6 -1.0486 3.3785 -3.1969 12 6 3.4023 1.4546 0.4915 13 1 3.7799 2.4699 0.3712 14 6 4.2770 0.4871 -0.3082 15 6 3.4373 1.0694 1.9717 16 6 2.6856 2.1209 2.7903 17 6 2.7207 1.7418 4.2484 18 1 3.2280 0.8408 4.5601 19 6 2.1050 2.5453 5.1846 20 7 1.4876 3.6427 4.8052 21 14 2.1479 2.0750 6.9919 22 1 3.5583 2.0043 7.4517 23 1 1.4194 3.0963 7.7867 24 1 1.5009 0.7509 7.1744 25 1 -0.3633 0.7421 0.7108 26 1 -0.3633 0.2444 -0.9981 27 1 -0.3632 -0.9867 0.2874 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1091 1.2258 -2.0929 31 1 2.6251 2.7965 -1.4334 32 1 0.3053 3.3267 -0.8097 33 1 -0.2334 1.7289 -1.3799 34 1 0.8713 5.0498 -2.4531 35 1 2.2421 3.9781 -2.8269 36 1 1.5160 3.8627 -5.1907 37 1 1.7868 5.5518 -4.6966 38 1 -0.3402 5.2834 -5.9791 39 1 -0.6327 5.8482 -4.3155 40 1 -0.8528 2.9670 -5.3032 41 1 -2.2114 4.0400 -4.8865 42 1 -1.6670 2.5000 -3.0125 43 1 -1.3825 4.1976 -2.5601 44 1 4.2520 0.7615 -1.3628 45 1 5.3031 0.5390 0.0562 46 1 3.8994 -0.5284 -0.1880 47 1 2.9628 0.0973 2.1055 48 1 4.4725 1.0180 2.3094 49 1 3.1601 3.0930 2.6565 50 1 1.6505 2.1723 2.4527 51 1 1.0542 4.2077 5.4638 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -13.227812 kcal Electronic energy + Delta-G solvation = -23623.978594 eV Core-core repulsion = 20557.403973 eV Total energy + Delta-G solvation = -3066.574622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.30538 -38.20493 -34.34683 -33.21939 -32.03330 -31.00751 -30.17557 -29.04590 -27.18808 -25.10843 -24.00507 -23.14299 -22.41931 -21.38989 -20.49914 -19.76209 -18.84063 -16.31432 -16.06900 -15.72249 -15.12425 -15.00294 -14.60527 -14.41333 -14.38703 -13.92970 -13.50337 -13.24627 -12.92695 -12.84745 -12.68245 -12.38410 -12.15405 -12.01035 -11.88087 -11.67940 -11.43005 -11.30132 -11.22327 -11.14180 -10.87389 -10.83340 -10.65542 -10.54001 -10.44837 -10.31585 -10.00312 -9.96687 -9.50891 -9.16788 -8.87765 -8.27880 -8.21756 -7.74065 -5.87356 -3.88569 3.38806 3.43070 3.45546 3.76966 4.47370 4.54786 4.71319 4.73252 4.82734 5.07243 5.19196 5.33511 5.33731 5.41092 5.44861 5.47998 5.50652 5.52594 5.56372 5.63426 5.69719 5.75131 5.78051 5.81985 5.83819 5.87671 5.91302 5.98159 5.99476 6.05561 6.10998 6.15133 6.22700 6.31908 6.32131 6.42043 6.49445 6.64512 6.70122 6.92853 7.11952 7.14883 7.32121 7.65063 7.65861 7.86037 8.09104 8.24084 8.58576 9.20252 9.73894 11.23545 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.003665 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.576170 B = 7637.480068 C = 8151.577078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 N -0.520 5.520 4 C 0.064 3.936 5 C 0.047 3.953 6 N -0.540 5.540 7 C 0.051 3.949 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.116 4.116 11 C 0.056 3.944 12 C 0.083 3.917 13 H 0.075 0.925 14 C -0.182 4.182 15 C -0.102 4.102 16 C 0.031 3.969 17 C -0.519 4.519 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.007 0.993 50 H 0.031 0.969 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -1.544 -19.769 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.244 5.244 4 C -0.064 4.064 5 C -0.080 4.080 6 N -0.265 5.265 7 C -0.077 4.077 8 C -0.154 4.154 9 C -0.159 4.159 10 C -0.153 4.153 11 C -0.072 4.072 12 C -0.025 4.025 13 H 0.093 0.907 14 C -0.241 4.241 15 C -0.140 4.140 16 C -0.006 4.006 17 C -0.557 4.557 18 H 0.068 0.932 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.714 3.286 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.026 0.974 50 H 0.050 0.950 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.792 -1.478 -19.689 19.941 hybrid contribution 0.275 0.022 1.119 1.152 sum -2.517 -1.457 -18.570 18.797 Atomic orbital electron populations 1.22003 0.95701 1.01671 1.01496 1.22141 0.95679 0.89318 1.00483 1.61974 1.21499 1.17989 1.22908 1.22029 0.96317 0.98466 0.89625 1.22445 0.98474 0.99895 0.87179 1.61914 1.06950 1.31034 1.26614 1.22139 0.97995 0.91477 0.96102 1.21583 0.96530 1.00863 0.96415 1.21576 0.95598 0.97833 1.00913 1.21576 0.99217 0.98163 0.96382 1.22044 0.89382 0.99793 0.95974 1.21906 0.85735 0.98536 0.96315 0.90695 1.22525 1.01015 1.00762 0.99812 1.21740 1.00053 1.00819 0.91391 1.18977 0.96332 0.92554 0.92720 1.21308 1.33758 1.07874 0.92798 0.93211 1.24988 0.95658 0.95167 0.98535 1.69967 1.36042 1.13658 1.33731 0.86760 0.78004 0.78075 0.85711 1.20432 1.21410 1.20385 0.91094 0.92957 0.93033 0.95430 0.90285 0.94253 0.91856 0.93891 0.89387 0.94855 0.90586 0.91309 0.91819 0.92106 0.92343 0.91267 0.91833 0.90929 0.94953 0.93599 0.92456 0.92706 0.93249 0.93403 0.97413 0.95046 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.82 37.16 0.33 -1.80 16 2 C 0.05 0.78 4.25 -3.82 -0.02 0.77 16 3 N -0.52 -8.61 3.83 -226.65 -0.87 -9.48 16 4 C 0.06 0.92 4.09 -3.82 -0.02 0.91 16 5 C 0.05 0.66 4.95 -3.83 -0.02 0.64 16 6 N -0.54 -6.61 4.66 -234.67 -1.09 -7.70 16 7 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 8 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 9 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 10 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 11 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 12 C 0.08 1.43 2.24 -67.72 -0.15 1.28 16 13 H 0.07 1.35 7.77 -51.93 -0.40 0.94 16 14 C -0.18 -2.59 8.57 37.15 0.32 -2.27 16 15 C -0.10 -2.12 4.58 -26.73 -0.12 -2.25 16 16 C 0.03 0.82 4.87 -27.88 -0.14 0.69 16 17 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.67 5.83 -51.93 -0.30 0.36 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.38 7.02 -51.93 -0.36 0.02 16 29 H 0.08 1.30 5.76 -51.93 -0.30 1.00 16 30 H 0.04 0.55 7.38 -51.93 -0.38 0.17 16 31 H 0.06 0.92 6.01 -51.93 -0.31 0.61 16 32 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.09 1.21 4.27 -51.93 -0.22 0.99 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.90 6.27 -51.93 -0.33 0.57 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.60 7.42 -51.93 -0.39 0.22 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.76 6.75 -51.93 -0.35 0.41 16 47 H 0.05 1.02 6.08 -51.93 -0.32 0.70 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.03 0.89 7.78 -51.93 -0.40 0.48 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -30.08 374.91 -11.29 -41.37 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -9.94 Total: -1.89 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.75 Total: -18.32 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -1.22 Total: -43.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.08 -11.29 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.141 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds