Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47420 * 2 1 4 4 C 1.52991 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46958 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46759 * 180.02562 * 5 4 3 7 7 C 1.46959 * 110.99807 * 190.00049 * 6 5 4 8 8 C 1.53050 * 109.36627 * 183.18754 * 7 6 5 9 9 N 1.46953 * 109.36590 * 301.59976 * 8 7 6 10 10 C 1.46899 * 111.00276 * 183.18464 * 9 8 7 11 11 H 1.08994 * 109.47117 * 302.66148 * 10 9 8 12 12 C 1.53005 * 109.46855 * 62.65553 * 10 9 8 13 13 C 1.52997 * 109.47348 * 182.65296 * 10 9 8 14 14 C 1.53000 * 109.47294 * 177.28439 * 13 10 9 15 15 C 1.50695 * 109.47428 * 185.60005 * 14 13 10 16 16 H 1.08001 * 120.00085 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00207 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00041 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46583 * 90.00526 * 19 17 15 21 21 H 1.48497 * 109.46749 * 210.00059 * 19 17 15 22 22 H 1.48495 * 109.47391 * 330.00395 * 19 17 15 23 23 C 1.46959 * 110.87956 * 59.31794 * 9 8 7 24 24 C 1.46953 * 111.00276 * 313.79953 * 6 5 4 25 25 H 1.08996 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46732 * 299.99792 * 1 2 3 27 27 H 1.08996 * 109.47016 * 59.99566 * 1 2 3 28 28 H 1.09005 * 109.46959 * 239.99730 * 2 1 3 29 29 H 1.09004 * 109.47062 * 119.99771 * 2 1 3 30 30 H 1.09003 * 109.46873 * 59.99594 * 3 2 1 31 31 H 1.08998 * 109.46892 * 300.00380 * 3 2 1 32 32 H 1.09000 * 109.47094 * 60.00590 * 4 3 2 33 33 H 1.08998 * 109.47689 * 300.00136 * 4 3 2 34 34 H 1.09000 * 109.46632 * 60.00435 * 5 4 3 35 35 H 1.08996 * 109.46881 * 299.99876 * 5 4 3 36 36 H 1.09005 * 109.48761 * 63.22083 * 7 6 5 37 37 H 1.09000 * 109.49112 * 303.15752 * 7 6 5 38 38 H 1.09005 * 109.48751 * 181.63177 * 8 7 6 39 39 H 1.09003 * 109.50640 * 61.57652 * 8 7 6 40 40 H 1.09004 * 109.46948 * 59.99883 * 12 10 9 41 41 H 1.09000 * 109.47195 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47351 * 300.00087 * 12 10 9 43 43 H 1.08996 * 109.47520 * 297.28580 * 13 10 9 44 44 H 1.08997 * 109.47017 * 57.28728 * 13 10 9 45 45 H 1.09008 * 109.47067 * 305.60461 * 14 13 10 46 46 H 1.09001 * 109.47067 * 65.59747 * 14 13 10 47 47 H 0.97001 * 120.00346 * 179.97438 * 18 17 15 48 48 H 1.09005 * 109.48761 * 60.64855 * 23 9 8 49 49 H 1.09000 * 109.48614 * 180.71017 * 23 9 8 50 50 H 1.09002 * 109.49240 * 296.78080 * 24 6 5 51 51 H 1.08996 * 109.49165 * 56.85036 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5490 2.8849 0.0000 7 6 6.0757 4.2361 0.2377 8 6 7.6035 4.2078 0.1512 9 7 8.1302 3.2586 1.1418 10 6 9.5991 3.2585 1.1418 11 1 9.9624 3.0175 0.1428 12 6 10.1092 4.6422 1.5498 13 6 10.1091 2.2135 2.1360 14 6 11.6376 2.1659 2.0869 15 6 12.1337 1.0443 2.9626 16 1 11.4294 0.4274 3.5008 17 6 13.4870 0.8064 3.0776 18 7 13.9199 -0.1727 3.8414 19 14 14.7053 1.8739 2.1473 20 1 15.0901 3.0348 2.9896 21 1 15.9147 1.0761 1.8218 22 1 14.0797 2.3594 0.8911 23 6 7.6035 1.9074 0.9041 24 6 6.0757 1.9358 0.9906 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8892 33 1 3.9331 0.9287 0.8908 34 1 3.7164 3.3992 0.8896 35 1 3.7171 3.3982 -0.8904 36 1 5.7738 4.5750 1.2287 37 1 5.6814 4.9179 -0.5159 38 1 7.9979 5.2032 0.3558 39 1 7.9058 3.8952 -0.8484 40 1 9.7458 4.8833 2.5488 41 1 11.1992 4.6420 1.5502 42 1 9.7459 5.3868 0.8415 43 1 9.7862 2.4810 3.1421 44 1 9.7066 1.2352 1.8733 45 1 11.9630 1.9966 1.0604 46 1 12.0423 3.1126 2.4448 47 1 14.8719 -0.3404 3.9221 48 1 7.9054 1.5685 -0.0869 49 1 7.9978 1.2257 1.6577 50 1 5.7738 2.2484 1.9902 51 1 5.6814 0.9404 0.7860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -18.546353 kcal Electronic energy + Delta-G solvation = -22763.626664 eV Core-core repulsion = 19696.821414 eV Total energy + Delta-G solvation = -3066.805251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59004 -37.29411 -35.66272 -33.66979 -32.21434 -31.14843 -30.79685 -28.98684 -26.89132 -25.67578 -24.38828 -23.28835 -21.80757 -21.37861 -20.77979 -19.77678 -19.25007 -16.86490 -16.29879 -16.13275 -15.09698 -14.87920 -14.81343 -14.69872 -14.28971 -14.21534 -14.00185 -13.60603 -13.36633 -13.14955 -12.80085 -12.53219 -12.23539 -12.21153 -12.05549 -11.83828 -11.49002 -11.39863 -11.32237 -11.18396 -11.17533 -11.03231 -10.88261 -10.74127 -10.71522 -10.48022 -10.23482 -9.82517 -9.64920 -9.47525 -9.09412 -8.50340 -8.42291 -8.03922 -6.01359 -3.98627 3.32240 3.39554 3.43393 3.76410 4.09012 4.47651 4.48074 4.60795 4.77589 4.88965 4.93758 4.99350 5.11879 5.24403 5.27634 5.30780 5.32483 5.37849 5.42676 5.44960 5.49637 5.53144 5.59017 5.60137 5.67997 5.73980 5.75673 5.81280 5.85140 5.90041 5.95279 6.03540 6.06953 6.09408 6.13365 6.22278 6.30399 6.50646 6.58239 6.65642 6.94410 6.96126 6.97932 7.32301 7.36159 7.42992 7.51389 7.84196 8.58016 9.04206 9.61513 11.12240 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025114 B = 0.002811 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.629076 B = 9957.986328 C =10869.225783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.125 4.125 5 C 0.057 3.943 6 N -0.541 5.541 7 C 0.060 3.940 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.079 3.921 11 H 0.036 0.964 12 C -0.142 4.142 13 C -0.097 4.097 14 C -0.012 4.012 15 C -0.517 4.517 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 C 0.052 3.948 24 C 0.054 3.946 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.012 0.988 46 H 0.014 0.986 47 H 0.262 0.738 48 H 0.039 0.961 49 H 0.091 0.909 50 H 0.040 0.960 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.478 6.933 -9.467 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.162 4.162 5 C -0.071 4.071 6 N -0.266 5.266 7 C -0.068 4.068 8 C -0.074 4.074 9 N -0.261 5.261 10 C -0.028 4.028 11 H 0.054 0.946 12 C -0.199 4.199 13 C -0.134 4.134 14 C -0.050 4.050 15 C -0.555 4.555 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.076 4.076 24 C -0.074 4.074 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.109 0.891 50 H 0.058 0.942 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.309 6.851 -9.407 26.053 hybrid contribution 0.772 0.499 -0.427 1.014 sum -22.538 7.350 -9.835 25.665 Atomic orbital electron populations 1.21779 0.96007 1.01553 1.01694 1.21531 0.95716 0.96884 1.02173 1.21574 0.95216 0.96866 1.01931 1.21768 0.95064 0.96491 1.02911 1.22116 0.87377 0.97105 1.00508 1.62248 1.07041 1.07576 1.49771 1.22136 0.95003 0.89824 0.99862 1.22166 0.93701 0.97446 0.94121 1.62230 1.08532 1.06915 1.48407 1.21797 0.85179 0.97194 0.98659 0.94647 1.21880 1.01340 0.95354 1.01376 1.21597 0.97925 0.96223 0.97703 1.19603 0.91499 0.97089 0.96817 1.21153 0.92631 1.14519 1.27205 0.91105 1.25040 0.98473 0.95088 0.95016 1.69915 1.14564 1.30678 1.39258 0.86784 0.80798 0.80691 0.81060 1.20306 1.21460 1.19047 1.22254 0.93450 0.91156 1.00782 1.22290 0.94979 0.96608 0.93514 0.92825 0.92832 0.92837 0.91965 0.91981 0.92173 0.92031 0.91084 0.91454 0.95042 0.91007 0.94140 0.90833 0.90207 0.94461 0.92048 0.91635 0.93719 0.92151 0.92520 0.96948 0.96785 0.92813 0.94320 0.89111 0.94155 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.83 5.21 -26.74 -0.14 -0.97 16 4 C -0.12 -1.04 4.48 -26.73 -0.12 -1.16 16 5 C 0.06 0.53 5.28 -3.82 -0.02 0.51 16 6 N -0.54 -6.22 4.86 -234.47 -1.14 -7.36 16 7 C 0.06 0.68 5.58 -3.77 -0.02 0.66 16 8 C 0.05 0.69 5.37 -3.77 -0.02 0.67 16 9 N -0.54 -8.05 4.58 -226.49 -1.04 -9.09 16 10 C 0.08 1.34 2.17 -67.71 -0.15 1.19 16 11 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 12 C -0.14 -2.20 8.75 37.16 0.33 -1.88 16 13 C -0.10 -1.95 4.30 -26.73 -0.12 -2.07 16 14 C -0.01 -0.29 3.59 -27.89 -0.10 -0.40 16 15 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 19 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 C 0.05 0.75 5.16 -3.77 -0.02 0.73 16 24 C 0.05 0.66 4.93 -3.77 -0.02 0.64 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.59 6.26 -51.93 -0.33 0.27 16 34 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.96 6.22 -51.93 -0.32 0.63 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.08 6.62 -51.93 -0.34 0.73 16 42 H 0.04 0.59 6.39 -51.93 -0.33 0.26 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.15 6.09 -51.93 -0.32 0.84 16 45 H 0.01 0.30 7.20 -51.92 -0.37 -0.07 16 46 H 0.01 0.33 6.22 -51.93 -0.32 0.01 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.09 1.40 5.96 -51.93 -0.31 1.09 16 50 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.91 5.99 -51.93 -0.31 0.59 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -30.35 377.17 -11.15 -41.50 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -10.15 Total: -3.52 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.62 Total: -17.08 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.40 Total: -43.92 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.35 -11.15 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.958 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds