Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47420 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47306 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47288 * 179.97438 * 5 4 3 7 7 C 1.46948 * 111.00367 * 170.00390 * 6 5 4 8 8 C 1.53048 * 109.36994 * 183.19148 * 7 6 5 9 9 N 1.46962 * 109.35835 * 301.59713 * 8 7 6 10 10 C 1.46899 * 110.99727 * 183.18828 * 9 8 7 11 11 H 1.09001 * 109.47354 * 55.00102 * 10 9 8 12 12 C 1.53006 * 109.47163 * 295.00082 * 10 9 8 13 13 C 1.52997 * 109.47254 * 174.99970 * 10 9 8 14 14 C 1.53001 * 109.47049 * 294.99897 * 13 10 9 15 15 C 1.50703 * 109.47033 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99962 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00308 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00075 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47394 * 90.00020 * 19 17 15 21 21 H 1.48501 * 109.47210 * 210.00031 * 19 17 15 22 22 H 1.48498 * 109.47051 * 329.99676 * 19 17 15 23 23 C 1.46948 * 110.88294 * 59.32018 * 9 8 7 24 24 C 1.46962 * 110.99727 * 293.80283 * 6 5 4 25 25 H 1.08996 * 109.47208 * 60.00301 * 1 2 3 26 26 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47239 * 300.00083 * 1 2 3 28 28 H 1.08996 * 109.46999 * 239.99539 * 2 1 3 29 29 H 1.09010 * 109.47135 * 119.99874 * 2 1 3 30 30 H 1.08998 * 109.46894 * 59.99817 * 3 2 1 31 31 H 1.08996 * 109.46685 * 300.00020 * 3 2 1 32 32 H 1.09006 * 109.47001 * 59.99429 * 4 3 2 33 33 H 1.09000 * 109.47049 * 300.00437 * 4 3 2 34 34 H 1.09008 * 109.46633 * 60.00044 * 5 4 3 35 35 H 1.08996 * 109.47149 * 300.00234 * 5 4 3 36 36 H 1.09003 * 109.49245 * 63.21574 * 7 6 5 37 37 H 1.08998 * 109.48890 * 303.15938 * 7 6 5 38 38 H 1.09000 * 109.49072 * 181.63580 * 8 7 6 39 39 H 1.08993 * 109.50501 * 61.56979 * 8 7 6 40 40 H 1.09001 * 109.46998 * 299.99678 * 12 10 9 41 41 H 1.09000 * 109.47050 * 59.99970 * 12 10 9 42 42 H 1.09001 * 109.46801 * 180.02562 * 12 10 9 43 43 H 1.08998 * 109.46934 * 54.99896 * 13 10 9 44 44 H 1.09006 * 109.47500 * 174.99769 * 13 10 9 45 45 H 1.08998 * 109.47252 * 299.99805 * 14 13 10 46 46 H 1.08998 * 109.47250 * 59.99881 * 14 13 10 47 47 H 0.97002 * 120.00267 * 180.02562 * 18 17 15 48 48 H 1.09004 * 109.49218 * 60.64290 * 23 9 8 49 49 H 1.08998 * 109.49241 * 180.70680 * 23 9 8 50 50 H 1.08994 * 109.48939 * 296.77447 * 24 6 5 51 51 H 1.08995 * 109.49072 * 56.82466 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5490 2.8849 0.0012 7 6 6.0759 4.2358 -0.2375 8 6 7.6038 4.1796 -0.3078 9 7 8.1293 3.6268 0.9483 10 6 9.5983 3.6268 0.9496 11 1 9.9619 4.6347 0.7496 12 6 10.1092 2.6758 -0.1347 13 6 10.1072 3.1629 2.3158 14 6 9.7015 4.1808 3.3836 15 6 10.2022 3.7235 4.7295 16 1 10.7549 2.7996 4.8147 17 6 9.9557 4.4853 5.8519 18 7 10.3922 4.0860 7.0265 19 14 9.0005 6.0838 5.7045 20 1 7.5507 5.8116 5.8749 21 1 9.4534 7.0298 6.7558 22 1 9.2382 6.6808 4.3658 23 6 7.6025 2.2759 1.1871 24 6 6.0746 2.3321 1.2574 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 3.7163 3.3993 0.8896 35 1 3.7171 3.3982 -0.8904 36 1 5.7733 4.8935 0.5774 37 1 5.6824 4.6185 -1.1791 38 1 7.9982 5.1848 -0.4559 39 1 7.9066 3.5438 -1.1397 40 1 9.7458 1.6679 0.0653 41 1 9.7467 3.0063 -1.1081 42 1 11.1993 2.6755 -0.1335 43 1 9.6723 2.1924 2.5551 44 1 11.1936 3.0776 2.2892 45 1 10.1364 5.1512 3.1444 46 1 8.6152 4.2661 3.4103 47 1 10.2185 4.6218 7.8163 48 1 7.9050 1.6182 0.3721 49 1 7.9960 1.8932 2.1287 50 1 5.7721 2.9681 2.0893 51 1 5.6798 1.3270 1.4057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -19.886767 kcal Electronic energy + Delta-G solvation = -23191.839546 eV Core-core repulsion = 20124.976171 eV Total energy + Delta-G solvation = -3066.863375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58397 -37.23860 -35.60276 -33.40635 -32.14898 -30.78635 -30.71670 -29.33538 -26.77649 -25.40368 -24.28068 -23.64574 -21.66534 -21.15071 -20.89787 -20.03303 -18.80817 -16.61340 -16.33997 -16.01936 -15.13825 -14.99432 -14.62177 -14.52663 -14.28773 -14.11249 -13.75222 -13.55241 -13.33410 -13.13747 -12.67935 -12.45220 -12.34181 -12.03399 -11.96904 -11.77870 -11.64752 -11.50216 -11.30791 -11.21932 -11.05626 -10.99376 -10.83882 -10.72688 -10.61189 -10.28893 -10.21367 -9.85989 -9.56544 -9.41717 -9.00602 -8.43427 -8.34669 -7.84543 -5.94946 -3.91121 3.39158 3.45456 3.52709 3.83832 4.19460 4.55369 4.58199 4.67278 4.84374 4.94000 4.99046 5.11244 5.17676 5.30011 5.36630 5.38175 5.41010 5.43517 5.47364 5.49740 5.53957 5.56293 5.62813 5.66907 5.68248 5.71152 5.77839 5.81144 5.88919 5.95810 6.02227 6.07030 6.10183 6.16029 6.18168 6.21138 6.27926 6.36750 6.54865 6.74338 7.04344 7.05519 7.08843 7.44448 7.47697 7.54799 7.70303 7.93511 8.65076 9.11138 9.69405 11.18865 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015445 B = 0.003658 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.507341 B = 7652.567672 C = 8575.171474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.116 4.116 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.058 3.942 8 C 0.056 3.944 9 N -0.525 5.525 10 C 0.079 3.921 11 H 0.077 0.923 12 C -0.183 4.183 13 C -0.096 4.096 14 C -0.006 4.006 15 C -0.516 4.516 16 H 0.068 0.932 17 C 0.064 3.936 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.265 1.265 23 C 0.053 3.947 24 C 0.055 3.945 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.009 0.991 46 H 0.024 0.976 47 H 0.261 0.739 48 H 0.039 0.961 49 H 0.090 0.910 50 H 0.043 0.957 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 -4.489 -18.414 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.072 4.072 6 N -0.265 5.265 7 C -0.070 4.070 8 C -0.073 4.073 9 N -0.249 5.249 10 C -0.029 4.029 11 H 0.095 0.905 12 C -0.242 4.242 13 C -0.133 4.133 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.086 0.914 17 C -0.136 4.136 18 N -0.549 5.549 19 Si 0.709 3.291 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.189 1.189 23 C -0.075 4.075 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.027 0.973 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.109 0.891 50 H 0.062 0.938 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.026 -4.425 -18.222 24.029 hybrid contribution -0.472 0.888 0.109 1.011 sum -15.498 -3.537 -18.112 24.099 Atomic orbital electron populations 1.21781 0.96052 1.01490 1.01722 1.21522 0.95662 0.96948 1.02088 1.21582 0.95405 0.96784 1.01918 1.21607 0.94605 0.96464 1.02741 1.22093 0.87503 0.97101 1.00544 1.62200 1.07058 1.22159 1.35127 1.22130 0.95022 0.89331 1.00504 1.22127 0.93821 0.99819 0.91505 1.62315 1.07837 1.21967 1.32767 1.21882 0.85989 0.98870 0.96146 0.90520 1.22471 1.01669 1.00823 0.99264 1.21574 0.99330 1.00098 0.92330 1.19466 0.96978 0.94156 0.93698 1.21251 1.35038 1.08598 0.90569 0.91400 1.25021 0.95544 0.97778 0.95270 1.69931 1.47244 1.39039 0.98692 0.86746 0.80413 0.84025 0.77892 1.20490 1.21787 1.18918 1.22222 0.93450 0.90054 1.01759 1.22232 0.95132 0.99837 0.90096 0.92864 0.92879 0.92790 0.92056 0.91992 0.92134 0.92118 0.91295 0.91785 0.94940 0.91190 0.94045 0.90912 0.90756 0.94195 0.92522 0.93279 0.92265 0.92694 0.92620 0.97263 0.95787 0.92965 0.94251 0.89139 0.93828 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 4 C -0.12 -1.07 5.15 -26.73 -0.14 -1.21 16 5 C 0.06 0.58 4.96 -3.83 -0.02 0.56 16 6 N -0.54 -6.70 4.71 -234.47 -1.10 -7.80 16 7 C 0.06 0.72 5.61 -3.77 -0.02 0.70 16 8 C 0.06 0.75 5.25 -3.77 -0.02 0.73 16 9 N -0.52 -8.38 4.15 -226.49 -0.94 -9.32 16 10 C 0.08 1.29 2.35 -67.71 -0.16 1.13 16 11 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 12 C -0.18 -2.51 8.49 37.16 0.32 -2.19 16 13 C -0.10 -1.90 4.45 -26.73 -0.12 -2.02 16 14 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 15 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.74 13.96 55.43 0.77 -27.97 16 19 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 23 C 0.05 0.80 4.82 -3.77 -0.02 0.78 16 24 C 0.05 0.75 5.41 -3.76 -0.02 0.73 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 6.49 -51.93 -0.34 0.30 16 34 H 0.03 0.36 8.12 -51.92 -0.42 -0.06 16 35 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 40 H 0.06 0.78 6.46 -51.93 -0.34 0.44 16 41 H 0.05 0.62 6.59 -51.93 -0.34 0.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 1.10 6.11 -51.93 -0.32 0.78 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.01 0.23 7.20 -51.93 -0.37 -0.15 16 46 H 0.02 0.60 7.18 -51.93 -0.37 0.23 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.04 0.57 6.47 -51.93 -0.34 0.24 16 49 H 0.09 1.51 6.07 -51.93 -0.32 1.20 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -30.94 377.60 -11.08 -42.02 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -10.16 Total: -3.18 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.67 Total: -17.40 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -1.27 Total: -45.09 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.94 -11.08 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.131 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds