Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46626 * 2 1 4 4 N 1.46900 * 109.47392 * 119.99504 * 2 1 3 5 5 C 1.46900 * 111.00141 * 321.26030 * 4 2 1 6 6 H 1.09002 * 109.46818 * 329.03925 * 5 4 2 7 7 C 1.53004 * 109.47031 * 89.03358 * 5 4 2 8 8 C 1.52995 * 109.47228 * 209.03861 * 5 4 2 9 9 C 1.52999 * 109.47328 * 63.62189 * 8 5 4 10 10 C 1.50698 * 109.47120 * 184.85431 * 9 8 5 11 11 H 1.08006 * 119.99950 * 5.00254 * 10 9 8 12 12 C 1.37871 * 120.00142 * 185.00278 * 10 9 8 13 13 N 1.31522 * 120.00443 * 184.98502 * 12 10 9 14 14 Si 1.86800 * 119.99890 * 4.97896 * 12 10 9 15 15 H 1.48511 * 109.47058 * 94.84082 * 14 12 10 16 16 H 1.48503 * 109.47363 * 214.83751 * 14 12 10 17 17 H 1.48495 * 109.47247 * 334.84157 * 14 12 10 18 18 C 1.46902 * 110.99711 * 85.21436 * 4 2 1 19 19 C 1.53119 * 109.52128 * 83.81922 * 18 4 2 20 20 C 1.53039 * 109.27691 * 182.37752 * 19 18 4 21 21 N 1.46839 * 109.52618 * 59.17720 * 20 19 18 22 22 C 1.46904 * 111.00343 * 174.16137 * 21 20 19 23 23 C 1.46852 * 111.19943 * 298.26283 * 21 20 19 24 24 C 1.53035 * 109.52453 * 61.73743 * 23 21 20 25 25 H 1.09004 * 109.47442 * 291.16325 * 1 2 3 26 26 H 1.08991 * 109.47913 * 51.17117 * 1 2 3 27 27 H 1.09003 * 109.46769 * 171.17059 * 1 2 3 28 28 H 1.08995 * 109.47050 * 240.00257 * 2 1 3 29 29 H 1.09003 * 109.46511 * 184.89927 * 3 2 1 30 30 H 1.09004 * 109.46795 * 304.89291 * 3 2 1 31 31 H 1.08998 * 109.47179 * 64.89328 * 3 2 1 32 32 H 1.09001 * 109.46943 * 182.14298 * 7 5 4 33 33 H 1.08995 * 109.47196 * 302.14885 * 7 5 4 34 34 H 1.09000 * 109.46573 * 62.14698 * 7 5 4 35 35 H 1.09000 * 109.47155 * 183.62288 * 8 5 4 36 36 H 1.09007 * 109.46795 * 303.62199 * 8 5 4 37 37 H 1.08996 * 109.47144 * 304.85018 * 9 8 5 38 38 H 1.08994 * 109.46827 * 64.85634 * 9 8 5 39 39 H 0.96999 * 119.99751 * 179.97438 * 13 12 10 40 40 H 1.08995 * 109.51836 * 203.94237 * 18 4 2 41 41 H 1.08997 * 109.50378 * 62.43627 * 19 18 4 42 42 H 1.09000 * 109.50534 * 302.31452 * 19 18 4 43 43 H 1.09007 * 109.45965 * 299.16001 * 20 19 18 44 44 H 1.08995 * 109.46092 * 179.19733 * 20 19 18 45 45 H 1.08994 * 109.46678 * 59.99905 * 22 21 20 46 46 H 1.08997 * 109.46915 * 300.00133 * 22 21 20 47 47 H 1.09004 * 109.46906 * 180.02562 * 22 21 20 48 48 H 1.08999 * 109.46082 * 181.76136 * 23 21 20 49 49 H 1.09003 * 109.45909 * 301.72460 * 23 21 20 50 50 H 1.09004 * 109.49989 * 180.88429 * 24 23 21 51 51 H 1.08996 * 109.50289 * 60.76504 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.1867 -0.3755 2.3672 6 1 0.7861 0.6330 2.2648 7 6 0.0326 -1.3760 2.4570 8 6 2.0355 -0.4606 3.6373 9 6 3.1356 0.6015 3.5877 10 6 4.0432 0.4407 4.7800 11 1 3.9033 -0.3890 5.4571 12 6 5.0520 1.3528 5.0064 13 7 5.9047 1.1599 5.9890 14 14 5.2078 2.8626 3.9175 15 1 4.5081 4.0070 4.5550 16 1 6.6434 3.1978 3.7384 17 1 4.5957 2.5834 2.5937 18 6 2.0873 -2.1432 0.9791 19 6 3.4061 -2.4943 0.2848 20 6 3.4447 -3.9984 0.0046 21 7 2.3082 -4.3680 -0.8485 22 6 2.3893 -5.7782 -1.2520 23 6 1.0303 -4.0836 -0.1833 24 6 0.9196 -2.5822 0.0913 25 1 -0.3634 0.3710 0.9584 26 1 -0.3634 0.6443 -0.8005 27 1 -0.3633 -1.0155 -0.1577 28 1 1.8933 -0.5138 -0.8900 29 1 3.1264 1.4438 -0.0878 30 1 1.6067 1.9811 -0.8430 31 1 1.7499 1.9305 0.9305 32 1 -0.6069 -1.1181 3.3011 33 1 -0.5498 -1.3424 1.5363 34 1 0.4325 -2.3802 2.5975 35 1 1.4037 -0.2888 4.5088 36 1 2.4883 -1.4498 3.7061 37 1 3.7145 0.4824 2.6719 38 1 2.6841 1.5933 3.6059 39 1 6.6146 1.8015 6.1480 40 1 2.0311 -2.6601 1.9370 41 1 4.2410 -2.2230 0.9309 42 1 3.4796 -1.9471 -0.6550 43 1 3.3851 -4.5448 0.9459 44 1 4.3763 -4.2495 -0.5025 45 1 2.3806 -6.4110 -0.3645 46 1 3.3121 -5.9446 -1.8077 47 1 1.5358 -6.0252 -1.8833 48 1 0.2082 -4.3968 -0.8269 49 1 0.9820 -4.6296 0.7589 50 1 -0.0221 -2.3736 0.5992 51 1 0.9539 -2.0363 -0.8515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = 27.485380 kcal Electronic energy + Delta-G solvation = -24904.651494 eV Core-core repulsion = 21839.842329 eV Total energy + Delta-G solvation = -3064.809165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62611 -37.80647 -34.11915 -32.97707 -32.30586 -31.17802 -29.89562 -29.01469 -27.09051 -25.90496 -24.94349 -22.95709 -22.44300 -21.51144 -20.55257 -19.88201 -18.34450 -16.60604 -16.18964 -15.67221 -15.43084 -15.18886 -14.79756 -14.25743 -14.00414 -13.66550 -13.32187 -13.03612 -12.92748 -12.73352 -12.64072 -12.45182 -12.30975 -12.14447 -11.93629 -11.60421 -11.58153 -11.43467 -11.27920 -11.09096 -10.92796 -10.90616 -10.83365 -10.74277 -10.31437 -9.94301 -9.84861 -9.67136 -9.55472 -9.30032 -8.96221 -8.42385 -8.36742 -7.78596 -5.91425 -3.86213 3.40119 3.47949 3.55967 3.85519 4.13141 4.58841 4.80544 4.87121 4.98110 5.06236 5.13823 5.20202 5.26614 5.30497 5.39306 5.44933 5.46571 5.47908 5.54557 5.58866 5.63316 5.68127 5.68743 5.75622 5.81950 5.85012 5.93410 5.98838 6.03697 6.06773 6.08706 6.16149 6.25099 6.37373 6.42145 6.43993 6.50709 6.58608 6.66436 6.78579 6.97380 7.01931 7.17123 7.50437 7.59732 7.64120 7.83136 7.99669 8.70009 9.15715 9.73707 11.22615 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.005194 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.957702 B = 5389.089846 C = 5917.290895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.077 3.923 3 C -0.140 4.140 4 N -0.510 5.510 5 C 0.078 3.922 6 H 0.075 0.925 7 C -0.199 4.199 8 C -0.089 4.089 9 C -0.003 4.003 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.064 3.936 13 N -0.910 5.910 14 Si 0.877 3.123 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.260 1.260 18 C 0.088 3.912 19 C -0.105 4.105 20 C 0.056 3.944 21 N -0.543 5.543 22 C 0.025 3.975 23 C 0.058 3.942 24 C -0.166 4.166 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.032 0.968 38 H 0.001 0.999 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.023 0.977 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.030 0.970 50 H 0.087 0.913 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 -9.211 -15.907 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.031 4.031 3 C -0.198 4.198 4 N -0.231 5.231 5 C -0.030 4.030 6 H 0.093 0.907 7 C -0.257 4.257 8 C -0.127 4.127 9 C -0.040 4.040 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.136 4.136 13 N -0.550 5.550 14 Si 0.705 3.295 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.184 1.184 18 C -0.021 4.021 19 C -0.143 4.143 20 C -0.072 4.072 21 N -0.268 5.268 22 C -0.123 4.123 23 C -0.071 4.071 24 C -0.204 4.204 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.105 0.895 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.202 -8.657 -16.137 21.467 hybrid contribution -0.645 0.013 0.205 0.677 sum -11.847 -8.645 -15.931 21.654 Atomic orbital electron populations 1.23301 0.98024 1.02646 1.02514 1.21683 0.92313 0.95496 0.93613 1.21802 1.01786 0.95082 1.01143 1.62309 1.51348 1.06572 1.02912 1.21906 0.91343 0.97912 0.91791 0.90666 1.23183 0.99714 1.00842 1.01959 1.21472 0.97249 1.00860 0.93157 1.19460 0.93847 0.92930 0.97757 1.21257 1.13085 1.11480 1.09417 0.91574 1.25014 0.95366 0.98126 0.95094 1.69946 1.16945 1.36560 1.31554 0.86801 0.76921 0.83538 0.82243 1.20815 1.21734 1.18364 1.21724 0.93735 0.88694 0.97939 1.21587 0.98111 0.93603 1.01014 1.22128 0.93376 0.96859 0.94815 1.61971 1.02657 1.19627 1.42576 1.22336 1.02434 0.88054 0.99504 1.22089 0.91383 0.96932 0.96691 1.23196 1.00438 0.95140 1.01665 0.91338 0.93127 0.90986 0.90407 0.92065 0.93267 0.92419 0.92801 0.91222 0.92269 0.93262 0.93068 0.94985 0.98055 0.93062 0.90281 0.90190 0.91422 0.94901 0.90810 0.95869 0.91478 0.91717 0.91347 0.95184 0.89513 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.31 7.05 37.16 0.26 -2.05 16 2 C 0.08 1.01 2.29 -67.71 -0.16 0.86 16 3 C -0.14 -1.98 9.38 37.16 0.35 -1.63 16 4 N -0.51 -7.67 3.43 -210.70 -0.72 -8.39 16 5 C 0.08 1.23 1.63 -67.71 -0.11 1.12 16 6 H 0.08 1.21 5.60 -51.93 -0.29 0.92 16 7 C -0.20 -2.55 6.86 37.16 0.25 -2.30 16 8 C -0.09 -1.78 4.73 -26.73 -0.13 -1.91 16 9 C 0.00 -0.06 3.90 -27.88 -0.11 -0.17 16 10 C -0.51 -15.03 9.65 -34.44 -0.33 -15.37 16 11 H 0.07 2.08 7.99 -52.48 -0.42 1.67 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 13 N -0.91 -28.88 13.96 55.43 0.77 -28.11 16 14 Si 0.88 22.46 27.42 -169.99 -4.66 17.79 16 15 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.26 -6.37 6.65 56.52 0.38 -6.00 16 18 C 0.09 1.18 1.60 -67.59 -0.11 1.07 16 19 C -0.10 -1.42 5.58 -26.65 -0.15 -1.56 16 20 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 21 N -0.54 -6.03 4.91 -242.96 -1.19 -7.22 16 22 C 0.03 0.23 9.59 60.07 0.58 0.80 16 23 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 24 C -0.17 -1.84 3.10 -26.65 -0.08 -1.92 16 25 H 0.07 0.81 4.91 -51.93 -0.25 0.56 16 26 H 0.05 0.52 8.11 -51.93 -0.42 0.09 16 27 H 0.07 0.74 3.84 -51.93 -0.20 0.54 16 28 H 0.08 1.00 5.76 -51.93 -0.30 0.70 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.90 7.15 -51.93 -0.37 0.52 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.78 3.29 -51.93 -0.17 0.61 16 34 H 0.06 0.76 5.84 -51.93 -0.30 0.46 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 1.06 7.44 -51.93 -0.39 0.67 16 37 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 38 H 0.00 0.03 7.14 -51.93 -0.37 -0.34 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.08 1.18 5.64 -51.93 -0.29 0.88 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 43 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 45 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 48 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.92 3.52 -51.93 -0.18 0.74 16 51 H 0.08 0.91 5.33 -51.93 -0.28 0.64 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -30.91 354.30 -9.55 -40.46 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -9.22 Total: 0.11 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 0.13 Total: -19.99 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -1.14 Total: -43.72 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.66 Total: 17.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.91 -9.55 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.950 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds