Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 N 1.46902 * 109.46757 * 119.99588 * 2 1 3 5 5 C 1.46896 * 111.00041 * 276.84828 * 4 2 1 6 6 H 1.09006 * 109.47421 * 33.13004 * 5 4 2 7 7 C 1.53005 * 109.47113 * 273.13266 * 5 4 2 8 8 C 1.52999 * 109.47145 * 153.13472 * 5 4 2 9 9 C 1.53005 * 109.47067 * 297.36522 * 8 5 4 10 10 C 1.50692 * 109.47359 * 185.00012 * 9 8 5 11 11 H 1.08005 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00052 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00009 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99867 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46795 * 60.00566 * 14 12 10 16 16 H 1.48495 * 109.46946 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47436 * 300.00675 * 14 12 10 18 18 C 1.46901 * 110.99729 * 152.89798 * 4 2 1 19 19 C 1.53116 * 109.52309 * 34.83459 * 18 4 2 20 20 C 1.53049 * 109.27250 * 182.50271 * 19 18 4 21 21 N 1.46846 * 109.57312 * 59.09369 * 20 19 18 22 22 C 1.46901 * 111.00140 * 174.19378 * 21 20 19 23 23 C 1.46853 * 111.19576 * 298.28198 * 21 20 19 24 24 C 1.53045 * 109.51787 * 61.74476 * 23 21 20 25 25 H 1.09003 * 109.46748 * 55.06551 * 1 2 3 26 26 H 1.08995 * 109.47007 * 295.06714 * 1 2 3 27 27 H 1.08995 * 109.46915 * 175.06636 * 1 2 3 28 28 H 1.08993 * 109.47321 * 239.99587 * 2 1 3 29 29 H 1.09001 * 109.47527 * 67.35086 * 3 2 1 30 30 H 1.08999 * 109.46674 * 187.35223 * 3 2 1 31 31 H 1.09004 * 109.46968 * 307.34406 * 3 2 1 32 32 H 1.08996 * 109.46942 * 302.76977 * 7 5 4 33 33 H 1.08997 * 109.47393 * 62.77318 * 7 5 4 34 34 H 1.09005 * 109.47062 * 182.77484 * 7 5 4 35 35 H 1.08994 * 109.47420 * 57.36886 * 8 5 4 36 36 H 1.09009 * 109.47233 * 177.36852 * 8 5 4 37 37 H 1.08995 * 109.47199 * 305.00693 * 9 8 5 38 38 H 1.09003 * 109.46496 * 65.00118 * 9 8 5 39 39 H 0.97005 * 120.00033 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.52495 * 154.96853 * 18 4 2 41 41 H 1.08991 * 109.51010 * 302.38483 * 19 18 4 42 42 H 1.08999 * 109.49908 * 62.50731 * 19 18 4 43 43 H 1.09000 * 109.41347 * 299.07190 * 20 19 18 44 44 H 1.09004 * 109.45166 * 179.13190 * 20 19 18 45 45 H 1.08994 * 109.47306 * 184.20899 * 22 21 20 46 46 H 1.09006 * 109.46399 * 304.20251 * 22 21 20 47 47 H 1.08999 * 109.47452 * 64.20346 * 22 21 20 48 48 H 1.08999 * 109.46367 * 301.73502 * 23 21 20 49 49 H 1.08993 * 109.46211 * 181.75951 * 23 21 20 50 50 H 1.09001 * 109.49574 * 180.87578 * 24 23 21 51 51 H 1.08995 * 109.53378 * 60.78461 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0409 0.2114 2.3573 6 1 1.2179 0.9219 2.2789 7 6 3.3689 0.9707 2.3873 8 6 1.8903 -0.6036 3.6434 9 6 0.5336 -1.3109 3.6430 10 6 0.3330 -2.0135 4.9609 11 1 1.0966 -1.9606 5.7229 12 6 -0.8259 -2.7232 5.1945 13 7 -1.7559 -2.7873 4.2669 14 14 -1.0741 -3.5948 6.8280 15 1 -1.0338 -2.6008 7.9305 16 1 -2.3910 -4.2811 6.8276 17 1 0.0052 -4.5956 7.0241 18 6 3.3461 -1.2783 0.9646 19 6 4.1499 -0.3675 0.0325 20 6 5.5067 -1.0133 -0.2584 21 7 5.3026 -2.3267 -0.8825 22 6 6.5819 -2.9154 -1.3006 23 6 4.5745 -3.2334 0.0143 24 6 3.1893 -2.6546 0.3121 25 1 -0.3633 0.5885 -0.8425 26 1 -0.3633 0.4354 0.9308 27 1 -0.3633 -1.0238 -0.0884 28 1 1.8934 -0.5139 -0.8899 29 1 1.7880 1.9171 0.9484 30 1 3.1220 1.4453 -0.1315 31 1 1.5733 1.9928 -0.8170 32 1 4.1938 0.2588 2.4161 33 1 3.4540 1.5894 1.4940 34 1 3.4051 1.6047 3.2732 35 1 2.6868 -1.3455 3.6988 36 1 1.9529 0.0617 4.5046 37 1 -0.2589 -0.5767 3.4983 38 1 0.5047 -2.0408 2.8340 39 1 -2.5711 -3.2868 4.4311 40 1 3.8715 -1.3829 1.9138 41 1 3.6053 -0.2308 -0.9016 42 1 4.3016 0.6001 0.5110 43 1 6.0570 -1.1359 0.6745 44 1 6.0754 -0.3744 -0.9342 45 1 6.3964 -3.8521 -1.8261 46 1 7.1007 -2.2232 -1.9641 47 1 7.1980 -3.1073 -0.4222 48 1 5.1291 -3.3456 0.9460 49 1 4.4662 -4.2071 -0.4633 50 1 2.6550 -3.3201 0.9902 51 1 2.6285 -2.5551 -0.6171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = 23.222609 kcal Electronic energy + Delta-G solvation = -24799.544812 eV Core-core repulsion = 21734.550799 eV Total energy + Delta-G solvation = -3064.994013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51411 -37.74270 -33.99669 -32.89770 -32.29718 -31.06368 -29.48515 -28.94900 -26.87431 -25.81241 -24.76084 -22.93211 -22.39835 -21.49211 -20.74075 -19.79276 -18.19507 -16.25042 -16.01263 -15.59702 -15.33688 -15.13450 -14.72523 -14.35155 -14.05810 -13.60101 -13.25721 -12.87108 -12.74318 -12.66613 -12.59167 -12.28570 -12.20356 -11.94726 -11.73135 -11.48197 -11.44776 -11.25431 -11.21872 -10.98614 -10.82597 -10.81335 -10.72178 -10.61102 -10.38432 -10.22034 -9.81110 -9.67657 -9.45516 -9.09460 -8.82541 -8.38356 -8.18581 -7.64211 -5.84476 -3.85363 3.40195 3.44552 3.47007 3.89717 4.24295 4.56990 4.86770 4.93333 5.04117 5.17054 5.19476 5.29354 5.33793 5.36921 5.47133 5.50837 5.51473 5.58976 5.63980 5.67067 5.70633 5.71371 5.75269 5.82861 5.88483 5.96676 6.03928 6.10310 6.13315 6.17318 6.21584 6.25665 6.33807 6.49744 6.51486 6.57465 6.60169 6.76562 6.83514 6.95644 7.02050 7.06569 7.38498 7.72271 7.75920 7.89608 8.14204 8.29420 8.62680 9.23734 9.76888 11.26290 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.004853 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.766359 B = 5768.234506 C = 6464.693571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 C -0.204 4.204 4 N -0.506 5.506 5 C 0.082 3.918 6 H 0.076 0.924 7 C -0.202 4.202 8 C -0.098 4.098 9 C 0.035 3.965 10 C -0.519 4.519 11 H 0.048 0.952 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.279 1.279 18 C 0.088 3.912 19 C -0.163 4.163 20 C 0.058 3.942 21 N -0.543 5.543 22 C 0.025 3.975 23 C 0.057 3.943 24 C -0.104 4.104 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.007 0.993 38 H 0.031 0.969 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.032 0.968 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.896 5.331 -12.137 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.261 4.261 4 N -0.227 5.227 5 C -0.026 4.026 6 H 0.094 0.906 7 C -0.260 4.260 8 C -0.136 4.136 9 C -0.002 4.002 10 C -0.557 4.557 11 H 0.066 0.934 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.713 3.287 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.205 1.205 18 C -0.021 4.021 19 C -0.202 4.202 20 C -0.071 4.071 21 N -0.268 5.268 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.142 4.142 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.074 4.930 -12.469 18.727 hybrid contribution 0.900 -0.001 1.528 1.773 sum 13.974 4.929 -10.941 18.419 Atomic orbital electron populations 1.21764 0.94360 1.02338 1.01110 1.21700 0.95881 0.92019 0.93498 1.23273 1.01847 0.98622 1.02397 1.62300 1.23337 1.33839 1.03228 1.21879 0.95458 0.93342 0.91909 0.90587 1.23248 0.99819 1.01009 1.01968 1.21650 1.01420 0.97662 0.92844 1.18931 0.89606 0.95186 0.96473 1.21333 1.02322 1.31151 1.00933 0.93350 1.24971 0.96271 0.96704 0.96308 1.69966 1.07902 1.42247 1.33205 0.86789 0.77148 0.79928 0.84858 1.20479 1.21417 1.20454 1.21711 0.89051 0.93789 0.97522 1.23098 0.95863 0.99708 1.01516 1.22083 0.97539 0.90448 0.96984 1.61970 1.19646 1.03428 1.41742 1.22335 0.90436 1.00120 0.99423 1.22138 0.95119 0.95712 0.94193 1.21578 0.95058 0.96366 1.01235 0.93551 0.92225 0.91902 0.90570 0.91326 0.91266 0.93204 0.92325 0.91372 0.92953 0.93905 0.93726 0.97490 0.95041 0.93256 0.90507 0.90277 0.89799 0.95273 0.91377 0.91486 0.91733 0.95937 0.95015 0.90849 0.90217 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.40 37.16 0.35 -1.76 16 2 C 0.08 1.09 2.29 -67.71 -0.15 0.94 16 3 C -0.20 -2.45 6.99 37.16 0.26 -2.19 16 4 N -0.51 -8.08 3.55 -210.70 -0.75 -8.83 16 5 C 0.08 1.38 1.67 -67.71 -0.11 1.26 16 6 H 0.08 1.34 5.70 -51.93 -0.30 1.04 16 7 C -0.20 -2.75 6.91 37.16 0.26 -2.50 16 8 C -0.10 -2.04 4.72 -26.73 -0.13 -2.17 16 9 C 0.04 0.92 4.77 -27.88 -0.13 0.79 16 10 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 11 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 14 Si 0.88 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.09 1.25 1.58 -67.59 -0.11 1.15 16 19 C -0.16 -1.92 3.11 -26.65 -0.08 -2.00 16 20 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 21 N -0.54 -6.26 4.91 -242.94 -1.19 -7.45 16 22 C 0.03 0.24 9.59 60.07 0.58 0.81 16 23 C 0.06 0.70 5.46 -3.83 -0.02 0.67 16 24 C -0.10 -1.48 5.59 -26.65 -0.15 -1.63 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.02 7.26 -51.93 -0.38 0.65 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.05 5.67 -51.93 -0.29 0.75 16 29 H 0.07 0.88 4.97 -51.93 -0.26 0.63 16 30 H 0.07 0.77 3.80 -51.93 -0.20 0.57 16 31 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.06 0.79 5.40 -51.93 -0.28 0.51 16 33 H 0.07 0.82 3.53 -51.93 -0.18 0.63 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.90 7.30 -51.93 -0.38 0.52 16 36 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.03 0.88 7.83 -51.93 -0.41 0.48 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.20 5.57 -51.93 -0.29 0.91 16 41 H 0.08 0.97 5.41 -51.93 -0.28 0.69 16 42 H 0.08 0.95 3.59 -51.93 -0.19 0.76 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 47 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 50 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.07 0.99 7.43 -51.93 -0.39 0.61 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -30.01 358.08 -9.97 -39.98 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.27 Total: 0.14 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 0.12 Total: -19.75 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.21 Total: -42.91 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.01 -9.97 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.206 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds