Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47266 * 2 1 4 4 C 1.46893 * 111.00057 * 66.04628 * 3 2 1 5 5 C 1.53002 * 109.47016 * 199.63876 * 4 3 2 6 6 C 1.46905 * 110.99909 * 190.00517 * 3 2 1 7 7 C 1.52998 * 109.47417 * 69.40582 * 6 3 2 8 8 C 1.53003 * 109.46966 * 179.97438 * 7 6 3 9 9 C 1.52994 * 109.46891 * 60.00421 * 8 7 6 10 10 N 1.46896 * 109.47524 * 59.99792 * 9 8 7 11 11 C 1.46906 * 110.99885 * 84.99840 * 10 9 8 12 12 C 1.53002 * 109.46842 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46913 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47301 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00278 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00401 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47522 * 89.99145 * 18 16 14 20 20 H 1.48497 * 109.47593 * 209.99891 * 18 16 14 21 21 H 1.48503 * 109.46905 * 329.99504 * 18 16 14 22 22 C 1.53003 * 109.47264 * 299.99440 * 9 8 7 23 23 C 1.53003 * 109.46759 * 309.40698 * 6 3 2 24 24 H 1.08996 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46629 * 300.00187 * 1 2 3 26 26 H 1.08999 * 109.47138 * 59.99644 * 1 2 3 27 27 H 1.09007 * 109.46878 * 239.99909 * 2 1 3 28 28 H 1.08999 * 109.47138 * 120.00356 * 2 1 3 29 29 H 1.09000 * 109.47339 * 319.64075 * 4 3 2 30 30 H 1.09002 * 109.47026 * 79.64384 * 4 3 2 31 31 H 1.09001 * 109.47316 * 184.55714 * 5 4 3 32 32 H 1.08999 * 109.47242 * 304.56044 * 5 4 3 33 33 H 1.09005 * 109.46813 * 64.56342 * 5 4 3 34 34 H 1.08996 * 109.47067 * 189.41083 * 6 3 2 35 35 H 1.08996 * 109.47411 * 300.00291 * 7 6 3 36 36 H 1.09006 * 109.46866 * 60.00118 * 7 6 3 37 37 H 1.09002 * 109.46891 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47075 * 299.99889 * 8 7 6 39 39 H 1.09005 * 109.46820 * 180.02562 * 9 8 7 40 40 H 1.00900 * 110.99715 * 321.04682 * 10 9 8 41 41 H 1.09001 * 109.46723 * 300.00151 * 11 10 9 42 42 H 1.09001 * 109.46934 * 60.00131 * 11 10 9 43 43 H 1.08989 * 109.47133 * 299.99753 * 12 11 10 44 44 H 1.08999 * 109.46916 * 60.00244 * 12 11 10 45 45 H 1.08996 * 109.47454 * 300.00597 * 13 12 11 46 46 H 1.09007 * 109.47074 * 59.99917 * 13 12 11 47 47 H 0.96992 * 120.00637 * 180.02562 * 17 16 14 48 48 H 1.08995 * 109.47098 * 300.00774 * 22 9 8 49 49 H 1.08997 * 109.47490 * 179.97438 * 22 9 8 50 50 H 1.08999 * 109.46852 * 300.00048 * 23 6 3 51 51 H 1.08996 * 109.47017 * 60.00353 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.7404 3.5813 1.0466 6 6 3.4686 1.4311 -0.2383 7 6 3.7614 1.0190 -1.6823 8 6 5.2703 1.0676 -1.9306 9 6 5.9760 0.1057 -0.9727 10 7 5.4859 -1.2601 -1.2011 11 6 6.2230 -1.9080 -2.2944 12 6 5.6851 -3.3251 -2.5025 13 6 6.4523 -3.9996 -3.6415 14 6 5.9222 -5.3952 -3.8470 15 1 5.1188 -5.7644 -3.2269 16 6 6.4636 -6.2011 -4.8259 17 7 7.4424 -5.7518 -5.5808 18 14 5.8060 -7.9308 -5.0811 19 1 4.6978 -7.8985 -6.0691 20 1 6.8948 -8.8048 -5.5869 21 1 5.3025 -8.4644 -3.7900 22 6 5.6832 0.5177 0.4714 23 6 4.1737 0.4687 0.7196 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.6593 1.7871 1.5496 30 1 2.3720 1.7739 2.0342 31 1 1.5606 4.0863 1.9956 32 1 2.7279 3.8516 0.6726 33 1 0.9826 3.8848 0.3242 34 1 3.8326 2.4443 -0.0686 35 1 3.3973 0.0057 -1.8520 36 1 3.2589 1.7046 -2.3648 37 1 5.4789 0.7745 -2.9595 38 1 5.6339 2.0811 -1.7611 39 1 7.0511 0.1407 -1.1493 40 1 4.4934 -1.2625 -1.3830 41 1 6.0935 -1.3323 -3.2109 42 1 7.2821 -1.9544 -2.0410 43 1 5.8142 -3.9009 -1.5862 44 1 4.6261 -3.2782 -2.7561 45 1 6.3230 -3.4236 -4.5578 46 1 7.5116 -4.0464 -3.3884 47 1 7.8230 -6.3186 -6.2697 48 1 6.0468 1.5312 0.6409 49 1 6.1856 -0.1678 1.1538 50 1 3.9651 0.7623 1.7484 51 1 3.8097 -0.5445 0.5500 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173103177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -27.238577 kcal Electronic energy + Delta-G solvation = -23352.619803 eV Core-core repulsion = 20285.437629 eV Total energy + Delta-G solvation = -3067.182174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15696 -37.46611 -34.76878 -32.96196 -32.02446 -31.22574 -30.83627 -29.44805 -27.23463 -25.64126 -23.42717 -23.12176 -22.52720 -22.36629 -20.28893 -19.94985 -18.55540 -16.57157 -16.28890 -15.90189 -15.53955 -14.82283 -14.70099 -14.58655 -14.37462 -14.26390 -13.96470 -13.32804 -13.07742 -12.93341 -12.39758 -12.33276 -12.26204 -12.18202 -12.02799 -11.84688 -11.71787 -11.64881 -11.43450 -11.24378 -11.15445 -10.84655 -10.71641 -10.57145 -10.49194 -10.40352 -10.34775 -10.14473 -9.66133 -9.29177 -9.01789 -8.37386 -8.31775 -8.04891 -5.96998 -3.98958 3.33826 3.39846 3.43714 3.68255 4.41994 4.51691 4.57417 4.70634 4.77362 4.86458 5.00373 5.03952 5.10828 5.15009 5.23827 5.28741 5.35495 5.38742 5.40839 5.45331 5.48539 5.52287 5.61859 5.63595 5.74837 5.80037 5.81865 5.88743 5.95589 5.97570 6.01001 6.06957 6.07971 6.09494 6.15641 6.28755 6.36114 6.38420 6.76771 6.83333 6.97047 6.99350 7.17563 7.43820 7.70553 7.72644 7.87486 8.03779 8.47226 9.08373 9.64892 11.14504 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.003109 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.083823 B = 9003.878026 C = 9767.772119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.085 3.915 7 C -0.109 4.109 8 C -0.149 4.149 9 C 0.084 3.916 10 N -0.684 5.684 11 C 0.058 3.942 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.100 4.100 23 C -0.150 4.150 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.336 0.664 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.057 0.943 49 H 0.067 0.933 50 H 0.055 0.945 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 18.839 13.639 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.086 4.086 5 C -0.203 4.203 6 C -0.023 4.023 7 C -0.147 4.147 8 C -0.189 4.189 9 C -0.026 4.026 10 N -0.316 5.316 11 C -0.070 4.070 12 C -0.144 4.144 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.139 4.139 23 C -0.189 4.189 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.771 18.752 13.609 25.146 hybrid contribution -0.219 -0.938 -0.393 1.040 sum -9.990 17.815 13.216 24.327 Atomic orbital electron populations 1.21834 0.95207 1.01548 1.02103 1.22144 0.95605 0.89230 1.01358 1.62284 1.13396 1.15737 1.34205 1.22157 1.00829 0.94857 0.90714 1.21756 1.02252 0.95003 1.01261 1.21758 0.86313 0.99157 0.95095 1.21530 0.95610 1.01831 0.95723 1.22187 0.95665 1.00578 1.00450 1.21545 0.98917 0.87957 0.94191 1.60742 1.08555 1.16466 1.45869 1.22149 0.98160 0.95999 0.90718 1.21609 0.99306 0.92878 1.00638 1.19057 0.95343 0.94820 0.92292 1.21262 1.18509 0.98814 1.17038 0.92713 1.25031 0.95073 0.98435 0.96005 1.69966 1.25554 1.36801 1.21339 0.86603 0.78512 0.84551 0.78396 1.20706 1.21246 1.19861 1.21450 0.95531 1.00368 0.96521 1.22179 0.96545 1.01131 0.99001 0.92280 0.92939 0.91990 0.90331 0.94446 0.90783 0.94569 0.92741 0.92736 0.92170 0.90269 0.91757 0.91301 0.91616 0.91724 0.90649 0.84396 0.95831 0.91624 0.92673 0.93865 0.96860 0.96628 0.93060 0.92405 0.91409 0.92643 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.88 37.16 0.37 -0.90 16 2 C 0.04 0.42 4.51 -3.82 -0.02 0.41 16 3 N -0.53 -5.05 4.36 -226.65 -0.99 -6.04 16 4 C 0.04 0.35 5.47 -3.83 -0.02 0.33 16 5 C -0.15 -1.08 10.08 37.16 0.37 -0.71 16 6 C 0.09 0.82 2.08 -67.71 -0.14 0.68 16 7 C -0.11 -1.15 4.96 -26.73 -0.13 -1.28 16 8 C -0.15 -1.63 5.52 -26.73 -0.15 -1.78 16 9 C 0.08 1.02 2.85 -67.72 -0.19 0.82 16 10 N -0.68 -9.91 5.77 -106.72 -0.62 -10.53 16 11 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 12 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 13 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 14 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.10 -1.06 5.64 -26.70 -0.15 -1.21 16 23 C -0.15 -1.51 4.19 -26.70 -0.11 -1.62 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.41 6.25 -51.93 -0.32 0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.82 6.26 -51.93 -0.32 0.50 16 28 H 0.04 0.37 6.83 -51.93 -0.35 0.02 16 29 H 0.07 0.58 5.88 -51.93 -0.31 0.28 16 30 H 0.04 0.31 6.38 -51.93 -0.33 -0.02 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.43 6.65 -51.93 -0.35 0.08 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.76 6.51 -51.93 -0.34 0.42 16 35 H 0.06 0.75 4.61 -51.93 -0.24 0.51 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 40 H 0.34 4.73 5.56 -39.29 -0.22 4.52 16 41 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 42 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 43 H 0.05 1.19 8.14 -51.94 -0.42 0.76 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.54 6.62 -51.93 -0.34 0.20 16 51 H 0.08 0.87 5.60 -51.93 -0.29 0.58 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -29.54 371.55 -10.81 -40.34 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -9.63 Total: 0.28 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.89 Total: -19.96 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.87 Total: -43.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.54 -10.81 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173103177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.102 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds