Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46597 * 2 1 4 4 H 1.08997 * 109.46953 * 302.62874 * 3 2 1 5 5 C 1.50704 * 109.46831 * 182.63137 * 3 2 1 6 6 H 1.08006 * 119.99713 * 239.99752 * 5 3 2 7 7 C 1.37870 * 120.00094 * 59.99772 * 5 3 2 8 8 N 1.31515 * 120.00426 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00022 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46994 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46841 * 119.99944 * 9 7 5 12 12 H 1.48494 * 109.47236 * 240.00124 * 9 7 5 13 13 N 1.46903 * 109.47450 * 62.63229 * 3 2 1 14 14 C 1.46895 * 110.99808 * 203.63588 * 13 3 2 15 15 C 1.53004 * 109.46746 * 206.19046 * 14 13 3 16 16 C 1.52998 * 109.46996 * 299.99809 * 15 14 13 17 17 C 1.53000 * 109.47080 * 300.00081 * 16 15 14 18 18 N 1.46905 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.46898 * 110.99759 * 309.32118 * 18 17 16 20 20 C 1.52991 * 109.47134 * 190.00172 * 19 18 17 21 21 C 1.46893 * 111.00322 * 73.27659 * 18 17 16 22 22 C 1.53003 * 109.47209 * 74.46821 * 21 18 17 23 23 C 1.52995 * 109.47170 * 60.00217 * 17 16 15 24 24 C 1.52995 * 109.47459 * 86.19236 * 14 13 3 25 25 H 1.09008 * 109.46699 * 183.26003 * 1 2 3 26 26 H 1.09004 * 109.47711 * 303.25687 * 1 2 3 27 27 H 1.09003 * 109.47235 * 63.26439 * 1 2 3 28 28 H 1.08998 * 109.47391 * 240.00267 * 2 1 3 29 29 H 1.09004 * 109.47294 * 119.99377 * 2 1 3 30 30 H 0.96996 * 120.00472 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00041 * 79.68106 * 13 3 2 32 32 H 1.09001 * 109.47141 * 326.18608 * 14 13 3 33 33 H 1.09006 * 109.46676 * 179.97438 * 15 14 13 34 34 H 1.09005 * 109.47123 * 59.99916 * 15 14 13 35 35 H 1.08995 * 109.46911 * 60.00126 * 16 15 14 36 36 H 1.09003 * 109.47013 * 180.02562 * 16 15 14 37 37 H 1.09005 * 109.47270 * 299.99766 * 17 16 15 38 38 H 1.09003 * 109.47616 * 310.00297 * 19 18 17 39 39 H 1.09006 * 109.47247 * 70.00380 * 19 18 17 40 40 H 1.08998 * 109.47230 * 300.00137 * 20 19 18 41 41 H 1.08997 * 109.47368 * 60.00310 * 20 19 18 42 42 H 1.09001 * 109.47564 * 180.02562 * 20 19 18 43 43 H 1.08998 * 109.47478 * 194.46953 * 21 18 17 44 44 H 1.09005 * 109.47365 * 314.47270 * 21 18 17 45 45 H 1.08997 * 109.46925 * 174.38958 * 22 21 18 46 46 H 1.09000 * 109.46769 * 294.38773 * 22 21 18 47 47 H 1.08999 * 109.46804 * 54.38810 * 22 21 18 48 48 H 1.08997 * 109.47197 * 180.02562 * 23 17 16 49 49 H 1.08995 * 109.47344 * 59.99634 * 23 17 16 50 50 H 1.09006 * 109.47168 * 180.02562 * 24 14 13 51 51 H 1.09003 * 109.46730 * 299.99799 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6385 1.9698 -0.8655 5 6 3.5455 1.4431 -0.0652 6 1 4.1201 1.8986 0.7277 7 6 4.1893 0.8623 -1.1371 8 7 3.4895 0.3081 -2.1030 9 14 6.0555 0.8636 -1.2183 10 1 6.6027 1.5451 -0.0178 11 1 6.5501 -0.5361 -1.2609 12 1 6.4973 1.5821 -2.4404 13 7 1.6028 2.1165 1.2300 14 6 1.5620 3.5733 1.0460 15 6 1.7546 4.2636 2.3978 16 6 0.6362 3.8385 3.3514 17 6 -0.7171 4.2405 2.7616 18 7 -1.7909 3.8329 3.6775 19 6 -1.6489 2.4218 4.0602 20 6 -2.9058 1.9662 4.8041 21 6 -1.8283 4.6989 4.8635 22 6 -2.4233 6.0567 4.4850 23 6 -0.9097 3.5503 1.4099 24 6 0.2087 3.9753 0.4563 25 1 -0.3633 -1.0261 0.0584 26 1 -0.3635 0.5636 0.8593 27 1 -0.3634 0.4623 -0.9178 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 3.9424 -0.1003 -2.8573 31 1 2.1938 1.8668 2.0087 32 1 2.3588 3.8762 0.3666 33 1 1.7248 5.3447 2.2612 34 1 2.7188 3.9772 2.8179 35 1 0.6664 2.7576 3.4878 36 1 0.7731 4.3307 4.3143 37 1 -0.7473 5.3216 2.6251 38 1 -1.5161 1.8141 3.1651 39 1 -0.7809 2.3070 4.7095 40 1 -3.0386 2.5738 5.6992 41 1 -3.7739 2.0809 4.1549 42 1 -2.8003 0.9193 5.0885 43 1 -2.4442 4.2342 5.6334 44 1 -0.8162 4.8389 5.2433 45 1 -2.5435 6.6635 5.3824 46 1 -1.7554 6.5649 3.7895 47 1 -3.3949 5.9089 4.0135 48 1 -1.8736 3.8370 0.9895 49 1 -0.8794 2.4693 1.5463 50 1 0.1787 5.0563 0.3193 51 1 0.0716 3.4835 -0.5068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173107530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -21.280000 kcal Electronic energy + Delta-G solvation = -24558.804434 eV Core-core repulsion = 21491.880643 eV Total energy + Delta-G solvation = -3066.923791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.58063 -37.02214 -34.70519 -31.96744 -31.78580 -31.08571 -30.28154 -29.05432 -26.82204 -25.58555 -23.17960 -22.80965 -22.46842 -21.94706 -19.74455 -19.36983 -18.15675 -16.56790 -16.07584 -15.38321 -14.86610 -14.62486 -14.48586 -14.31374 -14.02306 -13.81835 -13.05375 -12.77879 -12.72627 -12.50552 -12.39295 -12.07262 -11.82236 -11.75684 -11.55132 -11.44818 -11.39384 -11.27275 -11.10130 -11.02264 -10.85872 -10.73337 -10.65893 -10.35689 -10.25584 -10.04116 -9.81107 -9.62625 -9.51906 -9.32736 -8.95263 -8.35546 -8.04522 -7.16853 -5.97652 -4.10547 3.25560 3.34377 3.37155 4.02022 4.40226 4.92403 5.04558 5.14503 5.21511 5.25182 5.29004 5.35408 5.40193 5.50109 5.54385 5.61955 5.70511 5.74047 5.77374 5.89613 5.93867 5.99723 6.01402 6.03350 6.10972 6.16799 6.25562 6.29272 6.32009 6.42005 6.44834 6.54110 6.62120 6.69531 6.74376 6.81954 6.85743 6.99124 7.17832 7.23392 7.31778 7.36339 7.50089 7.64417 7.80827 8.13086 8.21375 8.39042 8.72565 9.03890 9.57244 11.01886 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.004447 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.550048 B = 6295.249261 C = 6784.033386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.091 3.909 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.090 3.910 18 N -0.532 5.532 19 C 0.046 3.954 20 C -0.148 4.148 21 C 0.042 3.958 22 C -0.145 4.145 23 C -0.097 4.097 24 C -0.101 4.101 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.324 0.676 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.046 0.954 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 7.300 11.558 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.307 5.307 14 C -0.020 4.020 15 C -0.152 4.152 16 C -0.180 4.180 17 C -0.018 4.018 18 N -0.256 5.256 19 C -0.081 4.081 20 C -0.206 4.206 21 C -0.086 4.086 22 C -0.203 4.203 23 C -0.135 4.135 24 C -0.140 4.140 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.065 0.935 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.347 7.174 11.003 17.358 hybrid contribution 2.989 0.112 0.271 3.003 sum -8.359 7.285 11.274 15.813 Atomic orbital electron populations 1.21725 0.99017 0.98227 1.00436 1.21474 0.92017 0.99367 1.01469 1.19147 0.92081 0.90945 0.87069 0.94959 1.21924 0.92865 1.37201 1.06209 0.93015 1.24922 0.97833 0.95107 0.95631 1.69886 1.34793 1.37810 1.09830 0.86646 0.86424 0.77689 0.77838 1.20033 1.21028 1.21103 1.60929 1.56805 1.04639 1.08364 1.21292 0.96014 0.90149 0.94497 1.21640 0.97852 0.99456 0.96254 1.22079 0.95858 1.02518 0.97511 1.21714 0.87847 0.99142 0.93083 1.62319 1.45936 1.02462 1.14851 1.22119 0.96442 0.89449 1.00123 1.21834 0.98576 1.00234 0.99947 1.22133 0.99364 0.94126 0.92937 1.21754 1.01590 0.96028 1.00883 1.21408 0.97138 1.01990 0.92925 1.21467 0.94965 0.98727 0.98858 0.95928 0.92967 0.94655 0.89453 0.95336 0.93021 0.85942 0.93606 0.92713 0.92594 0.90378 0.93696 0.91115 0.89671 0.94851 0.93215 0.92118 0.92595 0.91097 0.94828 0.92945 0.92920 0.92004 0.93064 0.89960 0.93487 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.82 37.16 0.36 -2.38 16 2 C -0.10 -2.45 5.44 -26.73 -0.15 -2.60 16 3 C 0.22 5.13 1.82 -68.86 -0.13 5.00 16 4 H 0.03 0.86 7.20 -51.93 -0.37 0.49 16 5 C -0.54 -14.34 8.20 -34.44 -0.28 -14.62 16 6 H 0.05 1.37 7.76 -52.48 -0.41 0.97 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.83 11.30 55.43 0.63 -24.20 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.20 3.88 -100.95 -0.39 -13.59 16 14 C 0.09 1.62 2.62 -67.72 -0.18 1.44 16 15 C -0.11 -1.70 5.29 -26.73 -0.14 -1.84 16 16 C -0.14 -1.92 4.26 -26.73 -0.11 -2.03 16 17 C 0.09 1.19 2.08 -67.71 -0.14 1.05 16 18 N -0.53 -6.51 4.37 -226.65 -0.99 -7.50 16 19 C 0.05 0.56 4.52 -3.83 -0.02 0.54 16 20 C -0.15 -1.53 9.88 37.15 0.37 -1.16 16 21 C 0.04 0.45 5.47 -3.83 -0.02 0.43 16 22 C -0.14 -1.40 9.92 37.16 0.37 -1.03 16 23 C -0.10 -1.44 5.06 -26.73 -0.14 -1.57 16 24 C -0.10 -1.66 5.53 -26.74 -0.15 -1.80 16 25 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.05 0.99 6.42 -51.93 -0.33 0.66 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.31 6.01 -51.93 -0.31 2.00 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.32 6.45 7.84 -39.29 -0.31 6.14 16 32 H 0.05 0.95 7.57 -51.93 -0.39 0.56 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.08 1.16 5.84 -51.93 -0.30 0.86 16 36 H 0.04 0.58 6.62 -51.93 -0.34 0.24 16 37 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 38 H 0.08 1.17 6.26 -51.93 -0.32 0.84 16 39 H 0.03 0.42 6.83 -51.93 -0.35 0.06 16 40 H 0.05 0.47 6.26 -51.93 -0.32 0.15 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.70 5.90 -51.93 -0.31 0.40 16 44 H 0.03 0.37 6.40 -51.93 -0.33 0.04 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.53 6.88 -51.93 -0.36 0.18 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.35 4.78 -51.93 -0.25 1.11 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 1.15 7.50 -51.93 -0.39 0.76 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -26.06 366.12 -10.24 -36.30 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -9.54 Total: 6.28 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.44 Total: -18.85 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.76 Total: -45.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.06 -10.24 -36.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173107530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.023 kcal (2) G-P(sol) polarization free energy of solvation -26.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds