Wall clock time and date at job start Tue Mar 31 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 H 1.09000 * 109.47532 * 54.26506 * 3 2 1 5 5 C 1.50703 * 109.47394 * 174.27092 * 3 2 1 6 6 H 1.07993 * 120.00002 * 119.99300 * 5 3 2 7 7 C 1.37874 * 119.99577 * 299.99671 * 5 3 2 8 8 N 1.31512 * 120.00344 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99526 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47379 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46777 * 120.00563 * 9 7 5 12 12 H 1.48500 * 109.47277 * 239.99753 * 9 7 5 13 13 N 1.46907 * 109.46849 * 294.27111 * 3 2 1 14 14 C 1.46894 * 111.00028 * 157.27035 * 13 3 2 15 15 C 1.53009 * 109.46778 * 273.94192 * 14 13 3 16 16 C 1.53001 * 109.47025 * 300.00111 * 15 14 13 17 17 C 1.53001 * 109.47183 * 299.99973 * 16 15 14 18 18 N 1.46900 * 109.46786 * 180.02562 * 17 16 15 19 19 C 1.46901 * 110.99877 * 60.00131 * 18 17 16 20 20 C 1.53000 * 109.47068 * 63.39244 * 19 18 17 21 21 C 1.46903 * 110.99675 * 183.95082 * 18 17 16 22 22 C 1.52998 * 109.46985 * 174.58753 * 21 18 17 23 23 C 1.53000 * 109.46963 * 60.00212 * 17 16 15 24 24 C 1.52994 * 109.47215 * 153.94656 * 14 13 3 25 25 H 1.09002 * 109.47017 * 177.34530 * 1 2 3 26 26 H 1.09001 * 109.47499 * 57.34774 * 1 2 3 27 27 H 1.09000 * 109.47549 * 297.34158 * 1 2 3 28 28 H 1.09000 * 109.47108 * 119.99151 * 2 1 3 29 29 H 1.08994 * 109.47611 * 239.99647 * 2 1 3 30 30 H 0.97001 * 119.99910 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99694 * 33.30424 * 13 3 2 32 32 H 1.08995 * 109.47758 * 33.94022 * 14 13 3 33 33 H 1.08997 * 109.46978 * 60.00038 * 15 14 13 34 34 H 1.08999 * 109.46713 * 180.02562 * 15 14 13 35 35 H 1.09003 * 109.46724 * 179.97438 * 16 15 14 36 36 H 1.08997 * 109.47066 * 59.99973 * 16 15 14 37 37 H 1.08997 * 109.47119 * 299.99968 * 17 16 15 38 38 H 1.09007 * 109.46809 * 183.39070 * 19 18 17 39 39 H 1.09000 * 109.47072 * 303.38702 * 19 18 17 40 40 H 1.09005 * 109.47014 * 185.08767 * 20 19 18 41 41 H 1.08998 * 109.46929 * 305.08875 * 20 19 18 42 42 H 1.09001 * 109.47421 * 65.09183 * 20 19 18 43 43 H 1.08994 * 109.47221 * 294.59356 * 21 18 17 44 44 H 1.09000 * 109.47048 * 54.59640 * 21 18 17 45 45 H 1.09005 * 109.47220 * 186.70888 * 22 21 18 46 46 H 1.09000 * 109.47400 * 306.71494 * 22 21 18 47 47 H 1.09001 * 109.46601 * 66.71708 * 22 21 18 48 48 H 1.08997 * 109.46823 * 180.02562 * 23 17 16 49 49 H 1.08997 * 109.47402 * 59.99930 * 23 17 16 50 50 H 1.08999 * 109.47482 * 179.97438 * 24 14 13 51 51 H 1.09003 * 109.47349 * 299.99556 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5952 1.9852 0.8342 5 6 3.5403 1.4450 0.1418 6 1 4.1548 1.8862 -0.6289 7 6 4.1283 0.8839 1.2555 8 7 3.3799 0.3470 2.1943 9 14 5.9881 0.8863 1.4310 10 1 6.5961 1.5464 0.2479 11 1 6.3682 1.6272 2.6606 12 1 6.4783 -0.5123 1.5245 13 7 1.6664 2.0939 -1.2627 14 6 1.6379 3.5550 -1.1130 15 6 0.2669 3.9873 -0.5892 16 6 -0.8168 3.5548 -1.5789 17 6 -0.5592 4.2117 -2.9365 18 7 -1.6000 3.7968 -3.8865 19 6 -2.9326 4.1966 -3.4150 20 6 -3.0119 5.7229 -3.3446 21 6 -1.3330 4.3338 -5.2275 22 6 -2.3583 3.7729 -6.2149 23 6 0.8118 3.7792 -3.4603 24 6 1.8955 4.2118 -2.4706 25 1 -0.3633 -1.0266 -0.0476 26 1 -0.3634 0.5545 -0.8652 27 1 -0.3634 0.4720 0.9128 28 1 1.8933 -0.5137 0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 3.7937 -0.0481 2.9776 31 1 0.7808 1.7475 -1.6000 32 1 2.4099 3.8631 -0.4080 33 1 0.0834 3.5194 0.3780 34 1 0.2457 5.0715 -0.4786 35 1 -1.7935 3.8625 -1.2054 36 1 -0.7956 2.4707 -1.6899 37 1 -0.5803 5.2957 -2.8254 38 1 -3.6891 3.8250 -4.1063 39 1 -3.1084 3.7775 -2.4243 40 1 -3.9672 6.0174 -2.9100 41 1 -2.1988 6.1007 -2.7248 42 1 -2.9264 6.1380 -4.3489 43 1 -1.4072 5.4210 -5.2049 44 1 -0.3301 4.0445 -5.5417 45 1 -2.0906 4.0749 -7.2275 46 1 -2.3673 2.6849 -6.1506 47 1 -3.3476 4.1596 -5.9701 48 1 0.9955 4.2476 -4.4272 49 1 0.8330 2.6951 -3.5713 50 1 1.8740 5.2959 -2.3596 51 1 2.8722 3.9038 -2.8438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173108045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:16 Heat of formation + Delta-G solvation = -12.617574 kcal Electronic energy + Delta-G solvation = -24443.699490 eV Core-core repulsion = 21377.151331 eV Total energy + Delta-G solvation = -3066.548160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76035 -37.39790 -34.83429 -31.99813 -31.74810 -31.05207 -30.11326 -29.01167 -26.89874 -25.85576 -24.25952 -22.80160 -22.13302 -21.65402 -19.60256 -19.55490 -18.37379 -16.47547 -16.13847 -15.69681 -15.19068 -14.73213 -14.55216 -14.04241 -13.95663 -13.57054 -13.16645 -13.11236 -12.92319 -12.61039 -12.57477 -12.18652 -12.15981 -11.98361 -11.74672 -11.58166 -11.38504 -11.37168 -11.05600 -10.99039 -10.83245 -10.69532 -10.61684 -10.54939 -10.18927 -9.88578 -9.84035 -9.71665 -9.57523 -9.32126 -8.92819 -8.29190 -8.20298 -7.05814 -5.90652 -3.94187 3.34476 3.42560 3.47815 3.90234 4.49927 4.83706 4.85615 5.04146 5.12034 5.18721 5.20904 5.31524 5.35519 5.40050 5.43687 5.48112 5.50762 5.63317 5.68310 5.76081 5.84542 5.85794 5.90287 5.95072 5.99860 6.04751 6.07895 6.17786 6.23042 6.24490 6.32729 6.34069 6.45418 6.57323 6.62484 6.71750 6.82877 6.88607 6.94084 7.16688 7.20014 7.23233 7.29292 7.63131 7.87130 8.00602 8.44431 8.49719 8.90903 9.15055 9.70802 11.14518 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.004150 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.284963 B = 6745.093510 C = 7037.973732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.094 3.906 15 C -0.147 4.147 16 C -0.110 4.110 17 C 0.087 3.913 18 N -0.531 5.531 19 C 0.044 3.956 20 C -0.193 4.193 21 C 0.043 3.957 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.103 4.103 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.320 0.680 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 8.755 -11.418 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.017 4.017 15 C -0.187 4.187 16 C -0.148 4.148 17 C -0.021 4.021 18 N -0.254 5.254 19 C -0.084 4.084 20 C -0.251 4.251 21 C -0.085 4.085 22 C -0.206 4.206 23 C -0.147 4.147 24 C -0.141 4.141 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.181 8.117 -11.539 18.001 hybrid contribution 0.071 1.028 0.848 1.334 sum -11.110 9.144 -10.690 17.926 Atomic orbital electron populations 1.21896 0.99695 0.99394 0.99691 1.21740 0.91161 1.00546 1.02863 1.19133 0.95173 0.89896 0.84702 0.98226 1.21279 0.91482 1.36073 1.03949 0.92097 1.24953 0.97874 0.95813 0.95965 1.69887 1.34434 1.39826 1.09565 0.86537 0.86132 0.77530 0.77760 1.19833 1.21368 1.21227 1.60804 1.34981 1.02318 1.33136 1.21398 0.94682 0.90177 0.95474 1.22199 0.97126 1.00482 0.98854 1.21600 0.98053 1.01496 0.93653 1.21670 0.91461 0.96892 0.92072 1.62310 1.01823 1.59302 1.01978 1.22222 0.91552 0.93212 1.01459 1.22417 1.02135 0.98773 1.01803 1.22159 1.00225 0.96839 0.89274 1.21805 0.98648 1.02155 0.98015 1.21594 0.92681 1.02830 0.97614 1.21515 0.98746 0.98116 0.95760 0.94588 0.94480 0.94016 0.88434 0.94207 0.93279 0.85944 0.90134 0.91799 0.92779 0.92669 0.90880 0.94419 0.90821 0.90425 0.92432 0.92290 0.92704 0.95061 0.90212 0.92647 0.91693 0.93088 0.92982 0.90191 0.93371 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.79 37.15 0.36 -2.58 16 2 C -0.12 -2.96 5.38 -26.73 -0.14 -3.10 16 3 C 0.22 5.36 1.86 -68.86 -0.13 5.24 16 4 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 5 C -0.49 -13.42 8.38 -34.44 -0.29 -13.71 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.57 11.29 55.43 0.63 -24.95 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.68 -14.06 5.53 -100.95 -0.56 -14.61 16 14 C 0.09 1.72 2.66 -67.71 -0.18 1.54 16 15 C -0.15 -2.35 5.51 -26.73 -0.15 -2.50 16 16 C -0.11 -1.56 4.72 -26.73 -0.13 -1.69 16 17 C 0.09 1.12 1.63 -67.71 -0.11 1.01 16 18 N -0.53 -6.26 4.62 -226.65 -1.05 -7.31 16 19 C 0.04 0.45 5.44 -3.82 -0.02 0.43 16 20 C -0.19 -1.82 9.20 37.16 0.34 -1.48 16 21 C 0.04 0.45 5.03 -3.82 -0.02 0.43 16 22 C -0.15 -1.33 9.51 37.16 0.35 -0.98 16 23 C -0.11 -1.53 4.62 -26.73 -0.12 -1.66 16 24 C -0.10 -1.60 5.64 -26.73 -0.15 -1.75 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.67 5.59 -51.93 -0.29 0.38 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.32 6.21 3.51 -39.29 -0.14 6.07 16 32 H 0.08 1.69 7.54 -51.93 -0.39 1.30 16 33 H 0.06 1.14 7.48 -51.93 -0.39 0.75 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 36 H 0.07 1.15 5.45 -51.93 -0.28 0.87 16 37 H 0.04 0.49 6.28 -51.93 -0.33 0.17 16 38 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 39 H 0.08 0.84 6.13 -51.93 -0.32 0.53 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.62 6.24 -51.93 -0.32 0.29 16 42 H 0.05 0.50 6.66 -51.93 -0.35 0.16 16 43 H 0.03 0.32 6.35 -51.93 -0.33 -0.01 16 44 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.43 6.79 -51.93 -0.35 0.08 16 48 H 0.05 0.66 6.23 -51.93 -0.32 0.34 16 49 H 0.08 1.27 7.24 -51.93 -0.38 0.90 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -27.40 359.70 -10.24 -37.64 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -9.19 Total: 6.64 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.47 Total: -19.40 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.98 Total: -46.87 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.40 -10.24 -37.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173108045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.025 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds