Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.47241 * 2 1 4 4 C 1.46900 * 110.99595 * 66.04472 * 3 2 1 5 5 C 1.52996 * 109.47123 * 199.99337 * 4 3 2 6 6 C 1.46898 * 111.00199 * 190.00421 * 3 2 1 7 7 C 1.52997 * 109.47231 * 69.63399 * 6 3 2 8 8 C 1.52999 * 109.47147 * 180.02562 * 7 6 3 9 9 C 1.53000 * 109.46950 * 59.99649 * 8 7 6 10 10 N 1.46900 * 109.47336 * 60.00477 * 9 8 7 11 11 C 1.46892 * 111.00259 * 183.95091 * 10 9 8 12 12 C 1.53007 * 109.47396 * 172.81607 * 11 10 9 13 13 C 1.46904 * 111.00155 * 59.99439 * 10 9 8 14 14 C 1.50699 * 109.46974 * 58.69382 * 13 10 9 15 15 H 1.08002 * 120.00141 * 5.11915 * 14 13 10 16 16 C 1.37873 * 119.99657 * 185.11993 * 14 13 10 17 17 N 1.31523 * 119.99717 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00520 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47089 * 89.99970 * 18 16 14 20 20 H 1.48497 * 109.47169 * 210.00096 * 18 16 14 21 21 H 1.48501 * 109.46895 * 330.00233 * 18 16 14 22 22 C 1.52997 * 109.47483 * 300.00145 * 9 8 7 23 23 C 1.52999 * 109.47147 * 59.99975 * 22 9 8 24 24 H 1.08996 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46861 * 299.99503 * 1 2 3 26 26 H 1.08996 * 109.46872 * 59.99503 * 1 2 3 27 27 H 1.09005 * 109.46946 * 240.00524 * 2 1 3 28 28 H 1.08992 * 109.47216 * 120.00118 * 2 1 3 29 29 H 1.08992 * 109.47573 * 319.99974 * 4 3 2 30 30 H 1.09002 * 109.46698 * 79.99728 * 4 3 2 31 31 H 1.08997 * 109.47445 * 304.59763 * 5 4 3 32 32 H 1.08999 * 109.46964 * 64.59857 * 5 4 3 33 33 H 1.09001 * 109.47087 * 184.59712 * 5 4 3 34 34 H 1.08998 * 109.46994 * 189.63390 * 6 3 2 35 35 H 1.09007 * 109.46958 * 299.99968 * 7 6 3 36 36 H 1.08991 * 109.47244 * 59.99777 * 7 6 3 37 37 H 1.08997 * 109.47144 * 179.97438 * 8 7 6 38 38 H 1.08998 * 109.46924 * 299.99897 * 8 7 6 39 39 H 1.09008 * 109.47162 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47463 * 292.81729 * 11 10 9 41 41 H 1.09000 * 109.47495 * 52.81934 * 11 10 9 42 42 H 1.09000 * 109.46759 * 306.61303 * 12 11 10 43 43 H 1.09008 * 109.46726 * 66.60963 * 12 11 10 44 44 H 1.08997 * 109.47142 * 186.60754 * 12 11 10 45 45 H 1.08993 * 109.47166 * 178.69612 * 13 10 9 46 46 H 1.09005 * 109.47114 * 298.69177 * 13 10 9 47 47 H 0.96996 * 119.99955 * 180.02562 * 17 16 14 48 48 H 1.08998 * 109.47125 * 300.00200 * 22 9 8 49 49 H 1.09004 * 109.47189 * 180.02562 * 22 9 8 50 50 H 1.08997 * 109.47451 * 180.02562 * 23 22 9 51 51 H 1.08998 * 109.46924 * 60.00103 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.7317 3.5813 1.0443 6 6 3.4686 1.4312 -0.2382 7 6 3.7609 1.0246 -1.6839 8 6 5.2699 1.0721 -1.9319 9 6 5.9741 0.1053 -0.9778 10 7 5.4822 -1.2590 -1.2118 11 6 6.0677 -2.2020 -0.2496 12 6 5.4013 -3.5704 -0.4066 13 6 5.7463 -1.6842 -2.5929 14 6 7.2277 -1.6238 -2.8626 15 1 7.9127 -1.3819 -2.0634 16 6 7.7086 -1.8773 -4.1296 17 7 9.0015 -1.8250 -4.3649 18 14 6.5240 -2.2963 -5.5118 19 1 6.0968 -1.0479 -6.1931 20 1 7.1991 -3.1875 -6.4892 21 1 5.3344 -2.9867 -4.9519 22 6 5.6818 0.5119 0.4679 23 6 4.1728 0.4644 0.7159 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.6617 1.7821 1.5529 30 1 2.3758 1.7787 2.0326 31 1 2.7165 3.8563 0.6666 32 1 0.9699 3.8799 0.3242 33 1 1.5526 4.0866 1.9934 34 1 3.8332 2.4436 -0.0647 35 1 3.3962 0.0121 -1.8575 36 1 3.2588 1.7130 -2.3636 37 1 5.4782 0.7820 -2.9617 38 1 5.6350 2.0843 -1.7582 39 1 7.0492 0.1388 -1.1547 40 1 7.1374 -2.2952 -0.4371 41 1 5.9071 -1.8339 0.7637 42 1 4.3195 -3.4579 -0.3354 43 1 5.6598 -3.9910 -1.3785 44 1 5.7501 -4.2369 0.3822 45 1 5.3929 -2.7058 -2.7324 46 1 5.2239 -1.0217 -3.2832 47 1 9.3399 -2.0030 -5.2563 48 1 6.0468 1.5241 0.6416 49 1 6.1839 -0.1767 1.1477 50 1 3.9644 0.7545 1.7457 51 1 3.8077 -0.5478 0.5422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173112051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -2.392337 kcal Electronic energy + Delta-G solvation = -24883.017279 eV Core-core repulsion = 21816.912519 eV Total energy + Delta-G solvation = -3066.104760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74625 -37.55920 -34.47817 -32.42505 -31.78282 -30.81169 -30.37663 -28.97451 -27.27742 -25.87803 -23.27800 -22.98265 -22.34192 -21.76884 -20.54908 -19.20173 -17.98769 -16.84193 -16.13681 -15.40581 -14.88647 -14.78889 -14.59085 -14.44403 -14.12455 -13.84501 -13.36653 -12.95620 -12.71345 -12.53064 -12.41566 -12.12059 -11.95323 -11.81921 -11.79079 -11.53340 -11.42145 -11.35638 -11.21718 -11.10995 -10.80841 -10.74842 -10.55247 -10.52526 -10.34305 -10.20493 -9.94673 -9.79991 -9.64719 -9.50419 -9.27056 -8.55858 -8.02648 -7.07552 -6.08761 -4.07099 3.27849 3.36054 3.39705 4.02185 4.40859 4.88994 4.99636 5.07178 5.16012 5.22413 5.25998 5.31861 5.40668 5.49434 5.51631 5.59396 5.71044 5.74350 5.79181 5.82622 5.90617 5.95301 6.00294 6.02491 6.05442 6.08177 6.09885 6.14758 6.18835 6.23997 6.28775 6.31402 6.49616 6.52755 6.65302 6.72499 6.76372 6.83016 6.90122 6.94917 6.96528 7.05502 7.19792 7.32488 7.37273 7.62821 8.14517 8.22211 8.48121 8.94738 9.55199 11.04430 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.005002 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.467350 B = 5596.482986 C = 5647.337362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.533 5.533 4 C 0.043 3.957 5 C -0.144 4.144 6 C 0.090 3.910 7 C -0.098 4.098 8 C -0.106 4.106 9 C 0.090 3.910 10 N -0.522 5.522 11 C 0.051 3.949 12 C -0.141 4.141 13 C 0.150 3.850 14 C -0.543 4.543 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.110 4.110 23 C -0.138 4.138 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.042 0.958 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 5.780 10.775 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.085 4.085 5 C -0.202 4.202 6 C -0.017 4.017 7 C -0.136 4.136 8 C -0.144 4.144 9 C -0.018 4.018 10 N -0.246 5.246 11 C -0.077 4.077 12 C -0.199 4.199 13 C 0.023 3.977 14 C -0.582 4.582 15 H 0.091 0.909 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.149 4.149 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.597 6.011 10.322 18.861 hybrid contribution 0.991 -0.672 -0.302 1.235 sum -13.606 5.338 10.020 17.721 Atomic orbital electron populations 1.21839 0.95774 1.01100 1.01881 1.22103 0.94871 0.89456 1.01590 1.62296 1.14166 1.15600 1.33597 1.22129 1.00442 0.94848 0.91097 1.21747 1.02334 0.95152 1.00974 1.21708 0.85462 0.98447 0.96131 1.21416 0.95975 1.02090 0.94092 1.21493 0.94530 0.97739 1.00683 1.21383 0.98094 0.89600 0.92753 1.62516 1.56800 1.00555 1.04754 1.21935 0.97907 0.92550 0.95283 1.21722 1.00198 0.96588 1.01401 1.20221 0.95655 0.95768 0.86017 1.21658 0.91988 1.48108 0.96464 0.90915 1.24947 0.94808 0.94617 0.98627 1.69930 1.12452 1.49722 1.21854 0.86858 0.81729 0.78853 0.82354 1.20204 1.21465 1.18899 1.21614 0.95682 1.00203 0.97392 1.22047 0.96362 1.01630 0.97646 0.92662 0.93177 0.92132 0.89822 0.94839 0.91154 0.94782 0.92631 0.92298 0.93000 0.91029 0.90602 0.92850 0.90783 0.93027 0.92844 0.94045 0.92679 0.93130 0.92240 0.93815 0.95428 0.95531 0.92803 0.92779 0.92384 0.93921 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 37.16 0.37 -1.16 16 2 C 0.05 0.58 4.50 -3.82 -0.02 0.56 16 3 N -0.53 -6.64 4.36 -226.65 -0.99 -7.63 16 4 C 0.04 0.46 5.47 -3.83 -0.02 0.44 16 5 C -0.14 -1.42 10.08 37.16 0.37 -1.05 16 6 C 0.09 1.23 2.08 -67.72 -0.14 1.09 16 7 C -0.10 -1.52 5.06 -26.73 -0.14 -1.65 16 8 C -0.11 -1.85 5.08 -26.73 -0.14 -1.98 16 9 C 0.09 1.66 1.95 -67.71 -0.13 1.53 16 10 N -0.52 -10.08 3.07 -228.08 -0.70 -10.78 16 11 C 0.05 0.95 5.20 -3.82 -0.02 0.93 16 12 C -0.14 -2.41 9.59 37.16 0.36 -2.05 16 13 C 0.15 3.44 3.57 -4.97 -0.02 3.42 16 14 C -0.54 -14.64 8.09 -34.44 -0.28 -14.92 16 15 H 0.07 2.15 6.10 -52.49 -0.32 1.83 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 18 Si 0.87 21.29 27.37 -169.99 -4.65 16.64 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.20 6.69 56.52 0.38 -5.83 16 22 C -0.11 -1.68 4.97 -26.73 -0.13 -1.81 16 23 C -0.14 -1.91 4.26 -26.73 -0.11 -2.03 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.47 6.25 -51.93 -0.32 0.15 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.15 6.27 -51.93 -0.33 0.83 16 28 H 0.03 0.42 6.83 -51.93 -0.35 0.06 16 29 H 0.07 0.70 5.87 -51.93 -0.31 0.40 16 30 H 0.03 0.38 6.39 -51.93 -0.33 0.05 16 31 H 0.05 0.59 6.67 -51.93 -0.35 0.24 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.98 6.53 -51.93 -0.34 0.64 16 35 H 0.08 1.28 5.96 -51.92 -0.31 0.97 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.48 6.43 -51.93 -0.33 1.15 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.17 6.48 -51.92 -0.34 0.83 16 40 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 41 H 0.05 0.92 5.84 -51.93 -0.30 0.61 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.13 6.71 -51.92 -0.35 0.78 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.66 5.69 -51.93 -0.30 0.36 16 46 H 0.03 0.62 5.52 -51.93 -0.29 0.34 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.88 6.19 -51.93 -0.32 0.56 16 50 H 0.04 0.55 6.63 -51.93 -0.34 0.21 16 51 H 0.08 1.22 5.99 -51.93 -0.31 0.91 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -27.93 355.49 -9.50 -37.43 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.15 Total: 2.14 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.14 Total: -16.73 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.91 Total: -44.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.65 Total: 16.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.93 -9.50 -37.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173112051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.034 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds