Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47019 * 111.00228 * 2 1 4 4 C 1.53093 * 109.25898 * 177.60758 * 3 2 1 5 5 O 1.43015 * 109.25957 * 56.84777 * 4 3 2 6 6 C 1.43013 * 113.74057 * 301.32835 * 5 4 3 7 7 H 1.09003 * 109.50697 * 298.73798 * 6 5 4 8 8 C 1.52999 * 109.50621 * 178.64795 * 6 5 4 9 9 N 1.46896 * 109.47047 * 65.00253 * 8 6 5 10 10 C 1.46901 * 110.99892 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47162 * 275.00026 * 10 9 8 12 12 C 1.52997 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47028 * 59.99926 * 12 11 10 14 14 C 1.50702 * 109.47289 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00236 * 119.99767 * 14 13 12 16 16 C 1.37880 * 119.99375 * 299.99868 * 14 13 12 17 17 N 1.31510 * 120.00535 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99628 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47560 * 89.99923 * 18 16 14 20 20 H 1.48504 * 109.46884 * 210.00109 * 18 16 14 21 21 H 1.48508 * 109.47025 * 329.99569 * 18 16 14 22 22 C 1.53001 * 109.47076 * 300.00290 * 13 12 11 23 23 C 1.52997 * 109.47429 * 59.99956 * 22 13 12 24 24 C 1.47010 * 111.00342 * 236.36558 * 2 1 3 25 25 H 1.09002 * 109.46923 * 183.63448 * 1 2 3 26 26 H 1.09001 * 109.47025 * 303.63773 * 1 2 3 27 27 H 1.08998 * 109.46704 * 63.63440 * 1 2 3 28 28 H 1.08997 * 109.50402 * 57.66872 * 3 2 1 29 29 H 1.08997 * 109.50566 * 297.54330 * 3 2 1 30 30 H 1.09007 * 109.50521 * 296.91132 * 4 3 2 31 31 H 1.09004 * 109.50557 * 176.78550 * 4 3 2 32 32 H 1.09002 * 109.46929 * 185.00594 * 8 6 5 33 33 H 1.09001 * 109.47010 * 304.99753 * 8 6 5 34 34 H 1.00899 * 110.99844 * 56.04629 * 9 8 6 35 35 H 1.08994 * 109.47068 * 34.99719 * 10 9 8 36 36 H 1.09004 * 109.46983 * 300.00384 * 11 10 9 37 37 H 1.08997 * 109.47331 * 59.99548 * 11 10 9 38 38 H 1.09001 * 109.46910 * 300.00232 * 12 11 10 39 39 H 1.08998 * 109.47260 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.47115 * 59.99614 * 13 12 11 41 41 H 0.96998 * 120.00679 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.47264 * 299.99940 * 22 13 12 43 43 H 1.09006 * 109.47252 * 180.02562 * 22 13 12 44 44 H 1.08998 * 109.47260 * 180.02562 * 23 22 13 45 45 H 1.09004 * 109.47408 * 59.99807 * 23 22 13 46 46 H 1.09004 * 109.50766 * 62.45507 * 24 2 1 47 47 H 1.08999 * 109.50451 * 302.32911 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 1 3.8386 -1.3084 -0.1677 8 6 4.0835 -1.5061 -2.2993 9 7 5.5417 -1.6304 -2.1732 10 6 6.1139 -2.3201 -3.3372 11 6 6.0323 -3.8331 -3.1245 12 6 6.6276 -4.5515 -4.3371 13 6 8.0911 -4.1385 -4.5068 14 6 8.6773 -4.8456 -5.7015 15 1 9.0689 -4.2731 -6.5294 16 6 8.7137 -6.2234 -5.7376 17 7 8.2373 -6.9205 -4.7294 18 14 9.4410 -7.1000 -7.2182 19 1 10.8943 -7.3149 -7.0017 20 1 8.7678 -8.4115 -7.3969 21 1 9.2389 -6.2703 -8.4332 22 6 8.1726 -2.6255 -4.7195 23 6 7.5773 -1.9071 -3.5069 24 6 1.9959 -0.7602 -1.1427 25 1 -0.3633 -1.0256 0.0651 26 1 -0.3633 0.5693 0.8556 27 1 -0.3633 0.4564 -0.9208 28 1 1.6134 1.9092 0.8681 29 1 1.6828 1.8826 -0.9110 30 1 3.8385 0.8643 0.9965 31 1 3.9222 2.3399 0.0030 32 1 3.6390 -2.4988 -2.3711 33 1 3.8437 -0.9350 -3.1962 34 1 5.7918 -2.1003 -1.3160 35 1 5.5539 -2.0484 -4.2319 36 1 6.5923 -4.1049 -2.2296 37 1 4.9898 -4.1274 -3.0039 38 1 6.0673 -4.2796 -5.2316 39 1 6.5699 -5.6293 -4.1853 40 1 8.6514 -4.4102 -3.6122 41 1 8.2626 -7.8898 -4.7549 42 1 7.6123 -2.3536 -5.6141 43 1 9.2152 -2.3313 -4.8409 44 1 7.6350 -0.8293 -3.6587 45 1 8.1376 -2.1790 -2.6123 46 1 1.6828 -0.2842 -2.0720 47 1 1.6134 -1.7803 -1.1086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = -58.302170 kcal Electronic energy + Delta-G solvation = -22875.060940 eV Core-core repulsion = 19670.698653 eV Total energy + Delta-G solvation = -3204.362287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85477 -38.12135 -35.95065 -34.87740 -32.67436 -31.30733 -29.60781 -29.22310 -28.26094 -25.68734 -24.35709 -23.84882 -22.01097 -21.43179 -20.83135 -20.27609 -18.74256 -16.68369 -16.45834 -16.26889 -15.62030 -15.38027 -15.11341 -14.75886 -14.45821 -14.16133 -13.86507 -13.47687 -13.20696 -12.73033 -12.68470 -12.56009 -12.41663 -12.20847 -12.13941 -11.70079 -11.40200 -11.32094 -11.19595 -10.97472 -10.77858 -10.59273 -10.39340 -10.19721 -10.07474 -9.87133 -9.71252 -9.32867 -8.93806 -8.74199 -8.62548 -8.28024 -7.87847 -5.93311 -3.99147 3.32857 3.39481 3.43005 3.46035 3.66724 4.29138 4.47858 4.67003 4.71764 4.86702 4.91252 4.97799 5.14150 5.16962 5.24285 5.35095 5.37804 5.40796 5.46922 5.49248 5.54818 5.58995 5.74058 5.75992 5.94566 6.03453 6.25229 6.35216 6.43037 6.48047 6.58225 6.58981 6.70595 6.74991 6.89604 6.99357 7.13675 7.19475 7.28280 7.45668 7.58523 7.73231 7.80395 8.08771 8.21004 8.53643 9.05443 9.65204 11.12062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040637 B = 0.002894 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.868425 B = 9671.333287 C =10104.651692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.361 6.361 6 C 0.099 3.901 7 H 0.065 0.935 8 C 0.068 3.932 9 N -0.679 5.679 10 C 0.091 3.909 11 C -0.143 4.143 12 C -0.105 4.105 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.109 4.109 23 C -0.099 4.099 24 C 0.023 3.977 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.336 0.664 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.258 0.742 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 13.848 10.224 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.279 6.279 6 C 0.040 3.960 7 H 0.083 0.917 8 C -0.062 4.062 9 N -0.308 5.308 10 C -0.018 4.018 11 C -0.183 4.183 12 C -0.144 4.144 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.106 4.106 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.950 14.151 10.317 22.389 hybrid contribution -0.567 -1.214 -1.110 1.741 sum -14.517 12.936 9.207 21.514 Atomic orbital electron populations 1.22384 0.86910 1.02480 1.00585 1.62197 1.08179 1.13724 1.42634 1.22844 0.97188 0.89698 1.01505 1.22628 0.91550 0.96721 0.90703 1.88154 1.69442 1.22975 1.47349 1.22164 0.90722 0.84178 0.98923 0.91718 1.21903 0.89550 0.97778 0.97019 1.60603 1.08428 1.56383 1.05429 1.21636 0.96179 0.91925 0.92062 1.22296 0.99006 0.95621 1.01333 1.21544 0.97468 1.02233 0.93115 1.18653 0.92569 0.88975 0.96802 1.21270 1.38720 0.91209 1.03701 0.92822 1.24973 0.95486 0.97674 0.95961 1.69875 1.46487 1.06150 1.30604 0.86659 0.79243 0.79053 0.83417 1.20772 1.21351 1.20003 1.21633 0.98775 0.98566 0.95723 1.21472 0.94097 0.98969 0.99217 1.22805 0.96347 0.99413 0.92037 0.91102 0.91237 0.95511 0.89847 0.93994 0.92480 0.88522 0.93694 0.90530 0.84618 0.91319 0.92790 0.94439 0.94969 0.89202 0.95803 0.93179 0.93601 0.93425 0.93021 0.92838 0.93731 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.07 0.58 0.76 16 2 N -0.54 -5.17 4.99 -242.60 -1.21 -6.38 16 3 C 0.02 0.14 5.66 -3.71 -0.02 0.12 16 4 C 0.06 0.60 7.01 37.21 0.26 0.86 16 5 O -0.36 -4.70 10.42 -35.23 -0.37 -5.07 16 6 C 0.10 1.16 2.98 -26.68 -0.08 1.08 16 7 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 8 C 0.07 0.88 5.16 -3.83 -0.02 0.86 16 9 N -0.68 -10.18 6.20 -106.73 -0.66 -10.84 16 10 C 0.09 1.57 2.47 -67.71 -0.17 1.40 16 11 C -0.14 -2.72 5.17 -26.73 -0.14 -2.86 16 12 C -0.10 -2.46 4.98 -26.73 -0.13 -2.59 16 13 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.11 -2.31 5.14 -26.73 -0.14 -2.45 16 23 C -0.10 -1.83 5.53 -26.73 -0.15 -1.97 16 24 C 0.02 0.23 4.95 -3.71 -0.02 0.21 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.56 7.44 -51.93 -0.39 0.17 16 33 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.34 4.85 8.47 -39.29 -0.33 4.51 16 35 H 0.07 1.22 7.80 -51.93 -0.41 0.82 16 36 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 37 H 0.04 0.66 7.45 -51.93 -0.39 0.27 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -29.24 358.13 -10.81 -40.06 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.97 Total: 1.81 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.61 Total: -16.45 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -1.24 Total: -42.19 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.37 Total: -5.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.24 -10.81 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.245 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds