Wall clock time and date at job start Tue Mar 31 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47011 * 111.00144 * 2 1 4 4 C 1.53104 * 109.25354 * 182.39267 * 3 2 1 5 5 O 1.43014 * 109.25663 * 303.14752 * 4 3 2 6 6 C 1.43016 * 113.73708 * 58.67576 * 5 4 3 7 7 H 1.09006 * 109.54419 * 61.28255 * 6 5 4 8 8 C 1.53002 * 109.50649 * 181.38778 * 6 5 4 9 9 N 1.46899 * 109.47485 * 299.78385 * 8 6 5 10 10 C 1.46897 * 111.00006 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47063 * 205.00290 * 10 9 8 12 12 C 1.53000 * 109.47191 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46992 * 59.99538 * 12 11 10 14 14 C 1.50706 * 109.47115 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99553 * 5.45087 * 14 13 12 16 16 C 1.37875 * 120.00010 * 185.44565 * 14 13 12 17 17 N 1.31512 * 120.00180 * 9.57740 * 16 14 13 18 18 Si 1.86802 * 119.99586 * 189.57869 * 16 14 13 19 19 H 1.48495 * 109.47381 * 94.99082 * 18 16 14 20 20 H 1.48501 * 109.46871 * 214.99042 * 18 16 14 21 21 H 1.48496 * 109.47175 * 334.98837 * 18 16 14 22 22 C 1.53001 * 109.47706 * 299.99921 * 13 12 11 23 23 C 1.53000 * 109.47318 * 84.99897 * 10 9 8 24 24 C 1.47010 * 110.99691 * 123.63930 * 2 1 3 25 25 H 1.09002 * 109.47235 * 296.36852 * 1 2 3 26 26 H 1.09008 * 109.46917 * 56.36267 * 1 2 3 27 27 H 1.08995 * 109.47642 * 176.36042 * 1 2 3 28 28 H 1.08999 * 109.50535 * 302.32406 * 3 2 1 29 29 H 1.09002 * 109.50568 * 62.46083 * 3 2 1 30 30 H 1.08995 * 109.50581 * 63.08568 * 4 3 2 31 31 H 1.09003 * 109.50178 * 183.17320 * 4 3 2 32 32 H 1.09004 * 109.47259 * 179.78185 * 8 6 5 33 33 H 1.09006 * 109.46696 * 59.78397 * 8 6 5 34 34 H 1.00900 * 110.99677 * 303.95490 * 9 8 6 35 35 H 1.09000 * 109.46891 * 324.99970 * 10 9 8 36 36 H 1.08992 * 109.47234 * 59.99599 * 11 10 9 37 37 H 1.09004 * 109.46783 * 300.00070 * 11 10 9 38 38 H 1.08993 * 109.46926 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.46739 * 299.99664 * 12 11 10 40 40 H 1.09000 * 109.47275 * 60.00455 * 13 12 11 41 41 H 0.96998 * 119.99532 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47189 * 300.00586 * 22 13 12 43 43 H 1.08998 * 109.47619 * 179.97438 * 22 13 12 44 44 H 1.08996 * 109.46959 * 300.00244 * 23 10 9 45 45 H 1.09004 * 109.46815 * 59.99754 * 23 10 9 46 46 H 1.09001 * 109.51050 * 57.66890 * 24 2 1 47 47 H 1.09003 * 109.54078 * 297.55809 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0174 0.5572 1.0403 6 6 3.5248 -0.7851 1.0710 7 1 3.8384 -1.3093 0.1681 8 6 4.0824 -1.5060 2.2999 9 7 5.5496 -1.5294 2.2303 10 6 6.1211 -2.2149 3.3970 11 6 7.5456 -1.7109 3.6374 12 6 8.1412 -2.4254 4.8522 13 6 8.1704 -3.9330 4.5935 14 6 8.7576 -4.6367 5.7898 15 1 8.9962 -4.0770 6.6821 16 6 8.9901 -5.9950 5.7451 17 7 8.8794 -6.6440 4.6067 18 14 9.4622 -6.9133 7.3018 19 1 8.2455 -7.5002 7.9186 20 1 10.4191 -7.9981 6.9656 21 1 10.0974 -5.9719 8.2586 22 6 6.7460 -4.4371 4.3531 23 6 6.1503 -3.7227 3.1389 24 6 1.9958 -0.7603 1.1427 25 1 -0.3634 0.4564 0.9207 26 1 -0.3633 0.5693 -0.8557 27 1 -0.3634 -1.0255 -0.0652 28 1 1.6134 1.9091 -0.8682 29 1 1.6828 1.8825 0.9110 30 1 3.8385 0.8641 -0.9964 31 1 3.9223 2.3397 -0.0037 32 1 3.7035 -2.5278 2.3248 33 1 3.7698 -0.9805 3.2023 34 1 5.8640 -1.9543 1.3708 35 1 5.5096 -2.0084 4.2753 36 1 7.5248 -0.6368 3.8213 37 1 8.1571 -1.9173 2.7590 38 1 9.1561 -2.0666 5.0232 39 1 7.5297 -2.2193 5.7307 40 1 8.7819 -4.1391 3.7150 41 1 9.0427 -7.5996 4.5754 42 1 6.1345 -4.2310 5.2316 43 1 6.7669 -5.5111 4.1683 44 1 5.1356 -4.0817 2.9676 45 1 6.7619 -3.9291 2.2605 46 1 1.6132 -1.7804 1.1086 47 1 1.6827 -0.2850 2.0723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:02 Heat of formation + Delta-G solvation = -59.347381 kcal Electronic energy + Delta-G solvation = -22864.678654 eV Core-core repulsion = 19660.271043 eV Total energy + Delta-G solvation = -3204.407611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85939 -38.14182 -35.95595 -34.86898 -32.66148 -31.32202 -29.67262 -29.23416 -28.28305 -25.69024 -24.36131 -23.83292 -22.01912 -21.47579 -20.83774 -20.30254 -18.76964 -16.68715 -16.46550 -16.26173 -15.63129 -15.39473 -15.11245 -14.78145 -14.44196 -14.18698 -13.86935 -13.49405 -13.21591 -12.74225 -12.69055 -12.57260 -12.42461 -12.21181 -12.11083 -11.72197 -11.43562 -11.33358 -11.21562 -11.01479 -10.82569 -10.62241 -10.39611 -10.20214 -10.09691 -9.92514 -9.71261 -9.35630 -8.88013 -8.74860 -8.67350 -8.26398 -7.90123 -5.96729 -3.97472 3.32876 3.40265 3.43591 3.45160 3.66434 4.28727 4.48678 4.66721 4.71044 4.84734 4.90618 4.96964 5.13285 5.16122 5.23476 5.34123 5.37013 5.39533 5.45106 5.48535 5.54163 5.57738 5.71366 5.75326 5.92470 6.00870 6.23302 6.31789 6.41253 6.46471 6.57579 6.58396 6.64978 6.72528 6.89715 6.97216 7.11996 7.16145 7.23201 7.43386 7.51897 7.72163 7.79739 8.06222 8.09715 8.52998 9.07377 9.65564 11.12241 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040515 B = 0.002886 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.941715 B = 9699.155900 C =10076.996858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.061 3.939 5 O -0.359 6.359 6 C 0.098 3.902 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.678 5.678 10 C 0.092 3.908 11 C -0.100 4.100 12 C -0.108 4.108 13 C 0.047 3.953 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.098 4.098 23 C -0.144 4.144 24 C 0.023 3.977 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.337 0.663 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.031 0.969 41 H 0.258 0.742 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 13.403 -10.132 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.016 4.016 5 O -0.277 6.277 6 C 0.040 3.960 7 H 0.082 0.918 8 C -0.062 4.062 9 N -0.307 5.307 10 C -0.017 4.017 11 C -0.138 4.138 12 C -0.146 4.146 13 C 0.028 3.972 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.137 4.137 23 C -0.183 4.183 24 C -0.106 4.106 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.154 13.712 -10.227 22.853 hybrid contribution -0.646 -1.311 1.110 1.835 sum -15.800 12.402 -9.117 22.058 Atomic orbital electron populations 1.22383 0.86914 1.02468 1.00592 1.62191 1.08176 1.13748 1.42623 1.22846 0.97202 0.89677 1.01506 1.22630 0.91543 0.96758 0.90709 1.88169 1.69362 1.22893 1.47280 1.22168 0.90789 0.84254 0.98836 0.91773 1.21916 0.89659 0.97611 0.97061 1.60576 1.05885 1.58761 1.05482 1.21622 0.96386 0.91691 0.92030 1.21480 0.94355 0.98786 0.99180 1.21624 0.98853 0.98527 0.95639 1.18667 0.92342 0.88950 0.97224 1.21237 1.41205 0.92885 0.99836 0.92800 1.24964 0.95370 0.97914 0.95630 1.69973 1.49971 1.08678 1.24190 0.86707 0.78200 0.79713 0.84163 1.20830 1.21389 1.19918 1.21465 0.98011 1.00764 0.93476 1.22282 0.99115 0.95801 1.01113 1.22799 0.96335 0.99399 0.92048 0.95508 0.91238 0.91114 0.89853 0.93984 0.92507 0.88508 0.93730 0.90605 0.84554 0.91298 0.92979 0.92772 0.93292 0.93675 0.95050 0.93189 0.94686 0.91132 0.94386 0.92613 0.89630 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.06 0.58 0.76 16 2 N -0.54 -5.12 4.98 -242.59 -1.21 -6.33 16 3 C 0.02 0.14 5.66 -3.71 -0.02 0.12 16 4 C 0.06 0.59 7.01 37.21 0.26 0.85 16 5 O -0.36 -4.64 10.34 -35.23 -0.36 -5.00 16 6 C 0.10 1.14 3.01 -26.68 -0.08 1.06 16 7 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.07 0.86 5.18 -3.82 -0.02 0.84 16 9 N -0.68 -10.05 6.12 -106.72 -0.65 -10.70 16 10 C 0.09 1.56 2.47 -67.71 -0.17 1.40 16 11 C -0.10 -1.82 5.53 -26.73 -0.15 -1.97 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 13 C 0.05 1.16 1.96 -91.77 -0.18 0.98 16 14 C -0.51 -14.22 8.48 -34.44 -0.29 -14.52 16 15 H 0.05 1.48 7.77 -52.48 -0.41 1.08 16 16 C 0.06 1.75 5.20 -17.82 -0.09 1.65 16 17 N -0.89 -25.77 12.16 55.43 0.67 -25.10 16 18 Si 0.88 21.47 29.55 -169.99 -5.02 16.45 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.10 -2.26 5.04 -26.76 -0.13 -2.40 16 23 C -0.14 -2.69 5.17 -26.76 -0.14 -2.83 16 24 C 0.02 0.23 4.95 -3.71 -0.02 0.21 16 25 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.54 7.44 -51.93 -0.39 0.16 16 33 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.34 4.83 8.47 -39.29 -0.33 4.49 16 35 H 0.07 1.20 7.80 -51.93 -0.40 0.80 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 44 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 45 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -29.46 359.43 -10.77 -40.23 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -9.01 Total: 1.32 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -0.59 Total: -16.28 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -1.19 Total: -42.13 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.36 Total: -5.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.46 -10.77 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.121 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds