Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47091 * 2 1 4 4 C 1.46895 * 111.00160 * 66.04428 * 3 2 1 5 5 C 1.53000 * 109.47170 * 199.59165 * 4 3 2 6 6 C 1.46901 * 111.00014 * 189.99950 * 3 2 1 7 7 C 1.53002 * 109.47180 * 75.74663 * 6 3 2 8 8 C 1.52998 * 109.46937 * 174.86654 * 7 6 3 9 9 N 1.46900 * 109.46871 * 180.02562 * 8 7 6 10 10 C 1.46897 * 111.00157 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47731 * 204.99549 * 10 9 8 12 12 C 1.52995 * 109.47717 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47179 * 59.99814 * 12 11 10 14 14 C 1.50702 * 109.46769 * 60.00463 * 13 12 11 15 15 H 1.08001 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99924 * 179.72390 * 16 14 13 18 18 Si 1.86798 * 119.99721 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47123 * 90.00358 * 18 16 14 20 20 H 1.48502 * 109.47292 * 209.99921 * 18 16 14 21 21 H 1.48502 * 109.47482 * 330.00045 * 18 16 14 22 22 C 1.53004 * 109.47299 * 300.00368 * 13 12 11 23 23 C 1.53000 * 109.47035 * 59.99887 * 22 13 12 24 24 H 1.08998 * 109.47541 * 300.00360 * 1 2 3 25 25 H 1.09002 * 109.47110 * 60.00311 * 1 2 3 26 26 H 1.09003 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47541 * 239.99640 * 2 1 3 28 28 H 1.09002 * 109.47110 * 119.99689 * 2 1 3 29 29 H 1.09002 * 109.47237 * 319.59187 * 4 3 2 30 30 H 1.09003 * 109.47415 * 79.58978 * 4 3 2 31 31 H 1.09002 * 109.46719 * 294.83965 * 5 4 3 32 32 H 1.08997 * 109.47399 * 54.83647 * 5 4 3 33 33 H 1.09005 * 109.47098 * 174.84220 * 5 4 3 34 34 H 1.09003 * 109.47022 * 315.74923 * 6 3 2 35 35 H 1.09000 * 109.47535 * 195.74865 * 6 3 2 36 36 H 1.09000 * 109.46819 * 54.86389 * 7 6 3 37 37 H 1.08999 * 109.47410 * 294.86708 * 7 6 3 38 38 H 1.09000 * 109.47583 * 60.00203 * 8 7 6 39 39 H 1.09008 * 109.47247 * 299.99655 * 8 7 6 40 40 H 1.00902 * 111.00041 * 303.95017 * 9 8 7 41 41 H 1.09006 * 109.47319 * 324.99759 * 10 9 8 42 42 H 1.09002 * 109.46912 * 59.99889 * 11 10 9 43 43 H 1.09006 * 109.47347 * 300.00194 * 11 10 9 44 44 H 1.09006 * 109.46874 * 300.00488 * 12 11 10 45 45 H 1.09003 * 109.47446 * 180.02562 * 12 11 10 46 46 H 1.08998 * 109.47205 * 180.02562 * 13 12 11 47 47 H 0.96998 * 119.99888 * 179.97438 * 17 16 14 48 48 H 1.08991 * 109.46588 * 179.97438 * 22 13 12 49 49 H 1.08997 * 109.46834 * 299.99682 * 22 13 12 50 50 H 1.08993 * 109.47066 * 180.02562 * 23 22 13 51 51 H 1.09006 * 109.47154 * 59.99685 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2532 5 6 1.7414 3.5813 1.0469 6 6 3.4684 1.4312 -0.2381 7 6 3.7502 1.1737 -1.7198 8 6 5.2457 1.3479 -1.9922 9 7 5.5161 1.1013 -3.4149 10 6 6.9454 1.2605 -3.7144 11 6 7.1204 1.6171 -5.1919 12 6 8.6089 1.7835 -5.5037 13 6 9.3421 0.4743 -5.2047 14 6 8.7703 -0.6279 -6.0586 15 1 7.9642 -0.4160 -6.7455 16 6 9.2754 -1.9072 -5.9622 17 7 8.7727 -2.8703 -6.7034 18 14 10.6691 -2.2739 -4.7737 19 1 10.1061 -2.6637 -3.4559 20 1 11.4952 -3.3865 -5.3075 21 1 11.5138 -1.0632 -4.6126 22 6 9.1673 0.1178 -3.7271 23 6 7.6786 -0.0487 -3.4154 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6588 1.7878 1.5490 30 1 2.3712 1.7733 2.0345 31 1 2.7716 3.8718 0.8409 32 1 1.1092 3.8635 0.2050 33 1 1.3943 4.0875 1.9477 34 1 3.9600 0.6665 0.3634 35 1 3.8512 2.4133 0.0392 36 1 3.1855 1.8825 -2.3255 37 1 3.4503 0.1575 -1.9755 38 1 5.8104 0.6392 -1.3865 39 1 5.5456 2.3643 -1.7366 40 1 5.1877 0.1885 -3.6925 41 1 7.3595 2.0576 -3.0969 42 1 6.5984 2.5500 -5.4048 43 1 6.7063 0.8200 -5.8096 44 1 9.0226 2.5808 -4.8861 45 1 8.7335 2.0379 -6.5563 46 1 10.4027 0.5931 -5.4264 47 1 9.1283 -3.7702 -6.6359 48 1 9.6892 -0.8151 -3.5144 49 1 9.5809 0.9150 -3.1096 50 1 7.5540 -0.3023 -2.3628 51 1 7.2650 -0.8460 -4.0331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -21.031511 kcal Electronic energy + Delta-G solvation = -23048.913477 eV Core-core repulsion = 19982.000462 eV Total energy + Delta-G solvation = -3066.913015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.72587 -38.25962 -35.42847 -32.71356 -32.04946 -31.64938 -29.92964 -29.32897 -27.54292 -24.81790 -23.67527 -23.27255 -21.89007 -21.38698 -20.77163 -20.36338 -18.67846 -16.31911 -16.08952 -15.78127 -15.61045 -14.97567 -14.87784 -14.33120 -14.25026 -14.05308 -13.62724 -13.47535 -13.08349 -12.54369 -12.51545 -12.43096 -12.18412 -12.11833 -11.99923 -11.75506 -11.71963 -11.45340 -11.37496 -11.29504 -11.07133 -10.86017 -10.69055 -10.53094 -10.41889 -10.14180 -9.95128 -9.72808 -9.27920 -9.08874 -8.78597 -8.54417 -8.48435 -7.88577 -6.02579 -3.98948 3.27732 3.39304 3.41151 3.60755 4.44550 4.49253 4.67069 4.76556 4.92390 5.02543 5.04976 5.22094 5.27785 5.29510 5.32253 5.40004 5.41770 5.48327 5.51266 5.56120 5.65934 5.72399 5.73101 5.76756 5.83136 5.91323 5.96843 6.01757 6.14574 6.18508 6.23343 6.29432 6.36852 6.39428 6.46727 6.57952 6.70895 6.80104 6.89242 6.90295 7.10472 7.13191 7.15958 7.31459 7.50468 7.58375 7.80159 7.86856 8.59609 9.02860 9.61296 11.10576 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.003112 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.412788 B = 8994.967272 C = 9409.286262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.045 3.955 5 C -0.147 4.147 6 C 0.056 3.944 7 C -0.110 4.110 8 C 0.061 3.939 9 N -0.686 5.686 10 C 0.097 3.903 11 C -0.095 4.095 12 C -0.096 4.096 13 C 0.006 3.994 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.268 1.268 22 C -0.113 4.113 23 C -0.132 4.132 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.341 0.659 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.024 0.976 47 H 0.261 0.739 48 H 0.042 0.958 49 H 0.033 0.967 50 H 0.032 0.968 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 9.047 15.692 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.073 4.073 7 C -0.148 4.148 8 C -0.070 4.070 9 N -0.316 5.316 10 C -0.012 4.012 11 C -0.133 4.133 12 C -0.135 4.135 13 C -0.013 4.013 14 C -0.537 4.537 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.193 1.193 22 C -0.151 4.151 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.159 0.841 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.397 9.758 15.079 22.407 hybrid contribution 1.639 -1.768 1.857 3.043 sum -11.758 7.989 16.936 22.111 Atomic orbital electron populations 1.21823 0.94973 1.01485 1.02370 1.22126 0.95997 0.89006 1.00919 1.62055 1.14140 1.15670 1.34426 1.22145 1.00753 0.95148 0.90212 1.21774 1.02228 0.94703 1.01743 1.22120 0.87105 1.01114 0.96935 1.21518 0.95930 1.02349 0.95042 1.21886 0.95059 1.00422 0.89591 1.60658 1.17654 1.36537 1.16736 1.21509 0.85686 0.96505 0.97512 1.21370 0.96378 1.00747 0.94769 1.21363 0.95083 0.97278 0.99732 1.19216 0.96016 0.94327 0.91702 1.21036 1.19254 0.91693 1.21673 0.90583 1.25005 0.96304 0.96441 0.95563 1.69903 1.42397 1.01435 1.40566 0.86896 0.83106 0.77509 0.80958 1.20925 1.22786 1.19283 1.21774 0.95182 0.98714 0.99402 1.22054 0.97332 0.99025 0.98687 0.92842 0.91716 0.92366 0.90352 0.95228 0.90697 0.95055 0.92766 0.91722 0.92604 0.94948 0.90768 0.90257 0.92306 0.95791 0.91574 0.84066 0.92074 0.93539 0.90648 0.94726 0.92739 0.95764 0.92889 0.93948 0.94812 0.94885 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.88 37.15 0.37 -0.79 16 2 C 0.05 0.43 5.50 -3.83 -0.02 0.41 16 3 N -0.54 -5.23 4.37 -234.63 -1.02 -6.25 16 4 C 0.05 0.38 5.55 -3.83 -0.02 0.35 16 5 C -0.15 -1.13 9.96 37.16 0.37 -0.76 16 6 C 0.06 0.56 4.81 -3.82 -0.02 0.54 16 7 C -0.11 -1.25 5.51 -26.73 -0.15 -1.40 16 8 C 0.06 0.79 5.48 -3.82 -0.02 0.77 16 9 N -0.69 -10.60 6.25 -106.72 -0.67 -11.27 16 10 C 0.10 1.69 2.47 -67.71 -0.17 1.53 16 11 C -0.09 -1.78 5.30 -26.74 -0.14 -1.92 16 12 C -0.10 -1.91 5.41 -26.73 -0.14 -2.06 16 13 C 0.01 0.14 2.18 -91.77 -0.20 -0.06 16 14 C -0.50 -13.50 7.19 -34.44 -0.25 -13.75 16 15 H 0.08 2.23 6.95 -52.49 -0.36 1.87 16 16 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 17 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 18 Si 0.88 22.11 24.37 -169.99 -4.14 17.97 16 19 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 20 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 22 C -0.11 -2.42 4.94 -26.73 -0.13 -2.55 16 23 C -0.13 -2.60 4.96 -26.73 -0.13 -2.73 16 24 H 0.05 0.38 6.25 -51.93 -0.32 0.06 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.76 6.72 -51.93 -0.35 0.41 16 28 H 0.03 0.27 8.12 -51.93 -0.42 -0.16 16 29 H 0.07 0.57 5.88 -51.93 -0.31 0.26 16 30 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 31 H 0.05 0.44 6.89 -51.93 -0.36 0.08 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 35 H 0.07 0.73 6.55 -51.93 -0.34 0.39 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.69 6.96 -51.93 -0.36 0.32 16 38 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 39 H 0.07 0.84 8.05 -51.92 -0.42 0.43 16 40 H 0.34 5.39 8.48 -39.29 -0.33 5.06 16 41 H 0.06 1.03 7.80 -51.93 -0.40 0.63 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.60 6.62 -51.93 -0.34 1.26 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.03 0.60 7.45 -51.93 -0.39 0.21 16 51 H 0.08 1.87 7.21 -51.93 -0.37 1.49 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -28.57 369.45 -10.08 -38.65 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -9.83 Total: 2.56 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.75 Total: -20.61 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.92 Total: -44.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.57 -10.08 -38.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.617 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds