Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47091 * 2 1 4 4 C 1.46895 * 111.00160 * 66.04428 * 3 2 1 5 5 C 1.53000 * 109.47170 * 199.59165 * 4 3 2 6 6 C 1.46901 * 111.00014 * 189.99950 * 3 2 1 7 7 C 1.53002 * 109.47180 * 75.74663 * 6 3 2 8 8 C 1.52998 * 109.46937 * 174.86654 * 7 6 3 9 9 N 1.46900 * 109.46871 * 180.02562 * 8 7 6 10 10 C 1.46897 * 111.00157 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47731 * 204.99549 * 10 9 8 12 12 C 1.52995 * 109.47717 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47179 * 59.99814 * 12 11 10 14 14 C 1.50702 * 109.46769 * 60.00463 * 13 12 11 15 15 H 1.08001 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99924 * 179.72390 * 16 14 13 18 18 Si 1.86798 * 119.99721 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47123 * 90.00358 * 18 16 14 20 20 H 1.48502 * 109.47292 * 209.99921 * 18 16 14 21 21 H 1.48502 * 109.47482 * 330.00045 * 18 16 14 22 22 C 1.53004 * 109.47299 * 300.00368 * 13 12 11 23 23 C 1.53000 * 109.47035 * 59.99887 * 22 13 12 24 24 H 1.08998 * 109.47541 * 300.00360 * 1 2 3 25 25 H 1.09002 * 109.47110 * 60.00311 * 1 2 3 26 26 H 1.09003 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47541 * 239.99640 * 2 1 3 28 28 H 1.09002 * 109.47110 * 119.99689 * 2 1 3 29 29 H 1.09002 * 109.47237 * 319.59187 * 4 3 2 30 30 H 1.09003 * 109.47415 * 79.58978 * 4 3 2 31 31 H 1.09002 * 109.46719 * 294.83965 * 5 4 3 32 32 H 1.08997 * 109.47399 * 54.83647 * 5 4 3 33 33 H 1.09005 * 109.47098 * 174.84220 * 5 4 3 34 34 H 1.09003 * 109.47022 * 315.74923 * 6 3 2 35 35 H 1.09000 * 109.47535 * 195.74865 * 6 3 2 36 36 H 1.09000 * 109.46819 * 54.86389 * 7 6 3 37 37 H 1.08999 * 109.47410 * 294.86708 * 7 6 3 38 38 H 1.09000 * 109.47583 * 60.00203 * 8 7 6 39 39 H 1.09008 * 109.47247 * 299.99655 * 8 7 6 40 40 H 1.00902 * 111.00041 * 303.95017 * 9 8 7 41 41 H 1.09006 * 109.47319 * 324.99759 * 10 9 8 42 42 H 1.09002 * 109.46912 * 59.99889 * 11 10 9 43 43 H 1.09006 * 109.47347 * 300.00194 * 11 10 9 44 44 H 1.09006 * 109.46874 * 300.00488 * 12 11 10 45 45 H 1.09003 * 109.47446 * 180.02562 * 12 11 10 46 46 H 1.08998 * 109.47205 * 180.02562 * 13 12 11 47 47 H 0.96998 * 119.99888 * 179.97438 * 17 16 14 48 48 H 1.08991 * 109.46588 * 179.97438 * 22 13 12 49 49 H 1.08997 * 109.46834 * 299.99682 * 22 13 12 50 50 H 1.08993 * 109.47066 * 180.02562 * 23 22 13 51 51 H 1.09006 * 109.47154 * 59.99685 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2532 5 6 1.7414 3.5813 1.0469 6 6 3.4684 1.4312 -0.2381 7 6 3.7502 1.1737 -1.7198 8 6 5.2457 1.3479 -1.9922 9 7 5.5161 1.1013 -3.4149 10 6 6.9454 1.2605 -3.7144 11 6 7.1204 1.6171 -5.1919 12 6 8.6089 1.7835 -5.5037 13 6 9.3421 0.4743 -5.2047 14 6 8.7703 -0.6279 -6.0586 15 1 7.9642 -0.4160 -6.7455 16 6 9.2754 -1.9072 -5.9622 17 7 8.7727 -2.8703 -6.7034 18 14 10.6691 -2.2739 -4.7737 19 1 10.1061 -2.6637 -3.4559 20 1 11.4952 -3.3865 -5.3075 21 1 11.5138 -1.0632 -4.6126 22 6 9.1673 0.1178 -3.7271 23 6 7.6786 -0.0487 -3.4154 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6588 1.7878 1.5490 30 1 2.3712 1.7733 2.0345 31 1 2.7716 3.8718 0.8409 32 1 1.1092 3.8635 0.2050 33 1 1.3943 4.0875 1.9477 34 1 3.9600 0.6665 0.3634 35 1 3.8512 2.4133 0.0392 36 1 3.1855 1.8825 -2.3255 37 1 3.4503 0.1575 -1.9755 38 1 5.8104 0.6392 -1.3865 39 1 5.5456 2.3643 -1.7366 40 1 5.1877 0.1885 -3.6925 41 1 7.3595 2.0576 -3.0969 42 1 6.5984 2.5500 -5.4048 43 1 6.7063 0.8200 -5.8096 44 1 9.0226 2.5808 -4.8861 45 1 8.7335 2.0379 -6.5563 46 1 10.4027 0.5931 -5.4264 47 1 9.1283 -3.7702 -6.6359 48 1 9.6892 -0.8151 -3.5144 49 1 9.5809 0.9150 -3.1096 50 1 7.5540 -0.3023 -2.3628 51 1 7.2650 -0.8460 -4.0331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -38.951554 kcal Electronic energy + Delta-G solvation = -23049.690548 eV Core-core repulsion = 19982.000462 eV Total energy + Delta-G solvation = -3067.690087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05688 -39.23100 -36.74571 -34.41342 -33.12608 -32.68242 -31.55072 -30.48749 -28.72863 -26.52621 -24.85153 -23.94906 -23.46739 -22.39275 -22.19543 -21.20296 -20.47206 -18.21782 -17.14002 -16.92768 -16.57621 -16.22088 -15.99543 -15.76368 -15.38604 -15.22214 -15.00239 -14.73961 -14.47477 -14.07676 -13.86000 -13.78139 -13.18304 -13.12465 -13.07013 -12.92136 -12.71698 -12.61705 -12.46353 -12.31070 -12.29238 -12.11587 -12.07437 -11.80071 -11.72924 -11.58112 -11.45890 -11.36822 -10.97171 -10.81175 -10.69409 -10.57232 -9.27685 -9.18938 -8.22990 -6.22021 1.28617 1.34662 1.44202 2.35265 2.85008 3.13413 3.35440 3.92124 3.98640 4.01019 4.06417 4.22691 4.25215 4.29779 4.32753 4.43603 4.50452 4.56739 4.59888 4.61574 4.64340 4.70381 4.72797 4.75510 4.78715 4.81436 4.86365 4.87637 4.96086 5.02035 5.05745 5.11737 5.13154 5.20777 5.26976 5.32316 5.39092 5.41242 5.48694 5.50435 5.51334 5.61187 5.76227 5.85645 6.15061 6.20049 6.27703 6.41720 6.50909 6.83981 7.41093 8.93778 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.003112 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.412788 B = 8994.967272 C = 9409.286262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.548 5.548 4 C 0.044 3.956 5 C -0.143 4.143 6 C 0.061 3.939 7 C -0.099 4.099 8 C 0.064 3.936 9 N -0.689 5.689 10 C 0.107 3.893 11 C -0.090 4.090 12 C -0.094 4.094 13 C 0.001 3.999 14 C -0.488 4.488 15 H 0.038 0.962 16 C 0.010 3.990 17 N -0.954 5.954 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.306 1.306 21 H -0.249 1.249 22 C -0.115 4.115 23 C -0.126 4.126 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.336 0.664 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.020 0.980 47 H 0.260 0.740 48 H 0.027 0.973 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.768 10.932 18.396 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.273 5.273 4 C -0.083 4.083 5 C -0.201 4.201 6 C -0.067 4.067 7 C -0.137 4.137 8 C -0.066 4.066 9 N -0.318 5.318 10 C -0.003 4.003 11 C -0.128 4.128 12 C -0.132 4.132 13 C -0.018 4.018 14 C -0.526 4.526 15 H 0.056 0.944 16 C -0.186 4.186 17 N -0.596 5.596 18 Si 0.771 3.229 19 H -0.200 1.200 20 H -0.234 1.234 21 H -0.173 1.173 22 C -0.152 4.152 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.179 11.674 17.799 25.035 hybrid contribution 1.481 -2.313 0.955 2.907 sum -11.698 9.361 18.754 24.004 Atomic orbital electron populations 1.21784 0.93979 1.02091 1.02320 1.22147 0.96843 0.88744 1.00492 1.62062 1.13765 1.16062 1.35445 1.22205 1.01220 0.95354 0.89550 1.21750 1.01843 0.94372 1.02142 1.22028 0.87606 1.01371 0.95725 1.21383 0.94764 1.01643 0.95944 1.21933 0.95931 1.00870 0.87846 1.60652 1.16276 1.36246 1.18591 1.21376 0.86606 0.95686 0.96600 1.21292 0.95783 1.00286 0.95433 1.21332 0.95381 0.96386 1.00092 1.19245 0.95700 0.94454 0.92378 1.21274 1.17528 0.92963 1.20843 0.94424 1.25770 0.98988 0.96413 0.97408 1.70056 1.44558 1.01924 1.43055 0.85938 0.80275 0.77689 0.78993 1.19988 1.23435 1.17256 1.21751 0.96234 0.99048 0.98214 1.21975 0.96441 0.99158 0.98956 0.92051 0.92527 0.91487 0.91363 0.95060 0.89910 0.94886 0.93152 0.92547 0.91116 0.95057 0.90143 0.91249 0.92959 0.95807 0.90567 0.84612 0.90001 0.91745 0.94283 0.91426 0.93467 0.96232 0.93063 0.95500 0.91432 0.93034 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.88 71.98 0.71 -1.34 16 2 C 0.05 0.78 5.50 86.30 0.47 1.25 16 3 N -0.55 -9.86 4.37 -896.23 -3.91 -13.77 16 4 C 0.04 0.65 5.55 86.30 0.48 1.13 16 5 C -0.14 -1.93 9.96 71.98 0.72 -1.21 16 6 C 0.06 1.13 4.81 86.30 0.42 1.55 16 7 C -0.10 -2.12 5.51 30.59 0.17 -1.95 16 8 C 0.06 1.52 5.48 86.30 0.47 1.99 16 9 N -0.69 -20.28 6.25 -491.55 -3.07 -23.35 16 10 C 0.11 3.49 2.47 44.92 0.11 3.60 16 11 C -0.09 -3.28 5.30 30.59 0.16 -3.12 16 12 C -0.09 -3.55 5.41 30.59 0.17 -3.39 16 13 C 0.00 0.05 2.18 -11.54 -0.03 0.02 16 14 C -0.49 -27.08 7.19 25.60 0.18 -26.89 16 15 H 0.04 2.33 6.95 -2.91 -0.02 2.31 16 16 C 0.01 0.57 5.45 84.65 0.46 1.04 16 17 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 18 Si 0.94 45.68 24.37 68.60 1.67 47.35 16 19 H -0.27 -12.75 6.87 99.48 0.68 -12.07 16 20 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 21 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 22 C -0.11 -4.62 4.94 30.60 0.15 -4.47 16 23 C -0.13 -4.77 4.96 30.60 0.15 -4.62 16 24 H 0.06 0.77 6.25 -2.39 -0.01 0.75 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.28 6.72 -2.39 -0.02 1.27 16 28 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 29 H 0.08 1.08 5.88 -2.39 -0.01 1.06 16 30 H 0.03 0.48 8.00 -2.39 -0.02 0.46 16 31 H 0.05 0.71 6.89 -2.39 -0.02 0.69 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.03 0.59 8.00 -2.39 -0.02 0.57 16 35 H 0.08 1.39 6.55 -2.39 -0.02 1.38 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.19 6.96 -2.39 -0.02 1.17 16 38 H 0.02 0.58 7.44 -2.39 -0.02 0.56 16 39 H 0.08 1.69 8.05 -2.38 -0.02 1.67 16 40 H 0.34 10.58 8.48 -89.69 -0.76 9.82 16 41 H 0.08 2.41 7.80 -2.38 -0.02 2.39 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.70 6.62 -2.38 -0.02 1.68 16 44 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.03 1.17 3.27 -2.39 -0.01 1.16 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.05 1.74 7.45 -2.39 -0.02 1.72 16 51 H 0.04 2.01 7.21 -2.38 -0.02 1.99 16 Total: -1.00 -62.66 369.45 -0.18 -62.84 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.03 Total: 23.08 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.80 Total: -36.42 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -6.69 Total: -96.85 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Total: -62.66 -0.18 -62.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.886 kcal (2) G-P(sol) polarization free energy of solvation -62.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds