Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47012 * 2 1 4 4 C 1.53005 * 109.47221 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.46885 * 180.02562 * 4 3 2 6 6 C 1.46901 * 111.00269 * 66.04843 * 5 4 3 7 7 C 1.46904 * 110.99895 * 189.99936 * 5 4 3 8 8 C 1.52996 * 109.47421 * 169.99861 * 7 5 4 9 9 N 1.46896 * 109.47200 * 179.97438 * 8 7 5 10 10 C 1.46903 * 111.00418 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47667 * 205.00504 * 10 9 8 12 12 C 1.52997 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47296 * 59.99748 * 12 11 10 14 14 C 1.50700 * 109.47257 * 59.99902 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.53003 * 109.47195 * 299.99941 * 13 12 11 23 23 C 1.52994 * 109.46903 * 84.99606 * 10 9 8 24 24 H 1.09003 * 109.46999 * 300.00103 * 1 2 3 25 25 H 1.08998 * 109.47244 * 60.00169 * 1 2 3 26 26 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47079 * 240.00672 * 2 1 3 28 28 H 1.08998 * 109.47244 * 119.99831 * 2 1 3 29 29 H 1.09003 * 109.47322 * 60.00095 * 3 2 1 30 30 H 1.08998 * 109.46977 * 299.99994 * 3 2 1 31 31 H 1.09003 * 109.47036 * 59.99747 * 4 3 2 32 32 H 1.09002 * 109.46534 * 299.99957 * 4 3 2 33 33 H 1.09000 * 109.47116 * 183.95308 * 6 5 4 34 34 H 1.08998 * 109.46908 * 303.94831 * 6 5 4 35 35 H 1.08994 * 109.47271 * 63.95223 * 6 5 4 36 36 H 1.09009 * 109.47012 * 49.99673 * 7 5 4 37 37 H 1.09002 * 109.46864 * 290.00329 * 7 5 4 38 38 H 1.08995 * 109.46990 * 60.00015 * 8 7 5 39 39 H 1.09002 * 109.47484 * 300.00089 * 8 7 5 40 40 H 1.00896 * 111.00418 * 303.95553 * 9 8 7 41 41 H 1.09005 * 109.46638 * 325.00521 * 10 9 8 42 42 H 1.08998 * 109.46987 * 59.99359 * 11 10 9 43 43 H 1.09005 * 109.46648 * 300.00005 * 11 10 9 44 44 H 1.08996 * 109.46678 * 299.99615 * 12 11 10 45 45 H 1.09004 * 109.46869 * 179.97438 * 12 11 10 46 46 H 1.08997 * 109.47279 * 180.02562 * 13 12 11 47 47 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.47453 * 180.02562 * 22 13 12 49 49 H 1.08996 * 109.47248 * 300.00419 * 22 13 12 50 50 H 1.08999 * 109.47824 * 300.01002 * 23 10 9 51 51 H 1.09005 * 109.46726 * 60.00969 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7106 3.5088 1.2538 7 6 5.5083 2.8739 -0.2387 8 6 5.9396 4.3221 -0.4791 9 7 7.3884 4.3684 -0.7172 10 6 7.8394 5.7465 -0.9530 11 6 9.1270 5.7275 -1.7792 12 6 9.5970 7.1627 -2.0242 13 6 9.8619 7.8487 -0.6826 14 6 10.9283 7.0919 0.0666 15 1 11.3723 6.2097 -0.3703 16 6 11.3364 7.5253 1.3103 17 7 10.7988 8.6022 1.8404 18 14 12.6586 6.5877 2.2386 19 1 13.1023 5.4249 1.4283 20 1 13.8148 7.4842 2.4933 21 1 12.1096 6.1081 3.5324 22 6 8.5743 7.8677 0.1436 23 6 8.1041 6.4330 0.3884 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 -0.8909 32 1 3.9336 0.9286 0.8892 33 1 4.0227 4.5517 1.1998 34 1 2.6325 3.4597 1.4061 35 1 4.2177 3.0205 2.0859 36 1 5.7517 2.2722 -1.1145 37 1 6.0327 2.4782 0.6311 38 1 5.6962 4.9237 0.3966 39 1 5.4152 4.7178 -1.3489 40 1 7.8943 3.9481 0.0479 41 1 7.0679 6.2935 -1.4950 42 1 8.9383 5.2383 -2.7348 43 1 9.8984 5.1805 -1.2371 44 1 8.8256 7.7100 -2.5661 45 1 10.5145 7.1491 -2.6125 46 1 10.1963 8.8713 -0.8572 47 1 11.0857 8.9068 2.7155 48 1 8.7629 8.3568 1.0992 49 1 7.8030 8.4150 -0.3983 50 1 7.1868 6.4465 0.9770 51 1 8.8756 5.8860 0.9304 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325567.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -31.803944 kcal Electronic energy + Delta-G solvation = -22835.763643 eV Core-core repulsion = 19768.383500 eV Total energy + Delta-G solvation = -3067.380143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.61501 -37.87628 -35.40857 -34.24179 -32.11042 -30.10072 -29.47027 -28.67535 -27.16424 -25.58549 -24.40726 -22.54279 -21.45058 -21.06072 -20.90997 -20.44655 -18.65630 -16.17847 -16.09768 -15.74180 -15.30661 -14.99595 -14.65619 -14.37252 -14.25379 -13.80581 -13.54625 -13.19613 -13.11530 -12.88294 -12.62028 -12.57094 -11.94358 -11.85890 -11.77194 -11.47516 -11.38368 -11.31137 -11.27974 -11.05674 -10.93057 -10.86470 -10.76752 -10.60930 -10.51215 -10.28189 -10.02842 -9.62390 -9.12949 -8.94318 -8.64364 -8.47346 -8.27732 -7.77894 -5.93951 -3.97726 3.29551 3.38477 3.42114 3.66384 4.46377 4.58563 4.67291 4.72325 4.83268 5.03157 5.06513 5.13348 5.27555 5.36398 5.37423 5.39577 5.47763 5.50721 5.58354 5.62150 5.65139 5.68922 5.77571 5.86442 5.87508 5.99431 6.03809 6.04356 6.12376 6.17853 6.37943 6.50253 6.52552 6.58533 6.80827 6.82303 6.91702 6.93947 6.95880 7.16575 7.23828 7.37140 7.53923 7.65054 7.77898 7.84628 7.98906 8.19557 8.53381 9.05417 9.65116 11.11946 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.002813 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.704523 B = 9951.519470 C =10300.143795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.018 3.982 7 C 0.058 3.942 8 C 0.064 3.936 9 N -0.690 5.690 10 C 0.096 3.904 11 C -0.091 4.091 12 C -0.107 4.107 13 C 0.042 3.958 14 C -0.497 4.497 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.883 3.117 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.287 1.287 22 C -0.104 4.104 23 C -0.125 4.125 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.337 0.663 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.046 0.954 46 H 0.023 0.977 47 H 0.257 0.743 48 H 0.089 0.911 49 H 0.012 0.988 50 H 0.026 0.974 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -13.474 -2.483 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.073 4.073 5 N -0.266 5.266 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.066 4.066 9 N -0.319 5.319 10 C -0.013 4.013 11 C -0.130 4.130 12 C -0.146 4.146 13 C 0.024 3.976 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.142 4.142 23 C -0.164 4.164 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.031 0.969 50 H 0.045 0.955 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.847 -13.273 -3.391 21.713 hybrid contribution 1.069 -0.494 2.325 2.606 sum -15.778 -13.766 -1.066 20.967 Atomic orbital electron populations 1.21759 0.95789 1.01484 1.01875 1.21498 0.95939 0.96855 1.01944 1.21641 0.94607 0.96492 1.02743 1.22140 0.95499 0.88890 1.00738 1.61917 1.14266 1.15672 1.34769 1.22498 1.01145 0.99755 0.89626 1.22093 0.86248 0.97993 1.00649 1.21879 0.89510 0.94886 1.00314 1.60620 1.03289 1.20352 1.47682 1.21563 0.96859 0.86289 0.96620 1.21340 0.96241 0.97490 0.97880 1.21560 0.98343 0.95265 0.99393 1.18702 0.93161 0.95722 0.90037 1.21210 1.19531 1.11133 1.01628 0.92588 1.24958 0.96427 0.95060 0.97731 1.69890 1.42789 1.23384 1.17106 0.86674 0.82189 0.80094 0.79884 1.19822 1.21192 1.21297 1.21438 0.96187 0.93598 1.03021 1.22001 0.98792 0.99631 0.96004 0.92831 0.92640 0.92867 0.91945 0.92252 0.91984 0.91077 0.90792 0.95110 0.90960 0.91346 0.95781 0.90079 0.95127 0.95389 0.90705 0.84580 0.92085 0.93964 0.91353 0.94937 0.93480 0.95863 0.93313 0.89299 0.96890 0.95508 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.94 5.15 -26.73 -0.14 -1.08 16 4 C 0.06 0.52 4.96 -3.82 -0.02 0.50 16 5 N -0.54 -6.05 4.76 -242.91 -1.16 -7.21 16 6 C 0.02 0.19 9.13 60.07 0.55 0.74 16 7 C 0.06 0.71 5.22 -3.82 -0.02 0.69 16 8 C 0.06 0.90 5.41 -3.83 -0.02 0.88 16 9 N -0.69 -10.96 6.25 -106.73 -0.67 -11.63 16 10 C 0.10 1.75 2.47 -67.71 -0.17 1.58 16 11 C -0.09 -1.77 5.30 -26.73 -0.14 -1.91 16 12 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 13 C 0.04 1.04 2.58 -91.77 -0.24 0.80 16 14 C -0.50 -13.16 6.61 -34.44 -0.23 -13.39 16 15 H 0.06 1.49 6.71 -52.49 -0.35 1.13 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -25.25 11.33 55.43 0.63 -24.62 16 18 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.10 -2.43 5.23 -26.75 -0.14 -2.57 16 23 C -0.13 -2.59 4.95 -26.76 -0.13 -2.73 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 6.47 -51.93 -0.34 0.17 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 32 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.07 0.81 6.47 -51.93 -0.34 0.47 16 34 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.99 7.93 -51.92 -0.41 0.57 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 38 H 0.03 0.41 5.85 -51.93 -0.30 0.11 16 39 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 40 H 0.34 5.34 8.47 -39.29 -0.33 5.01 16 41 H 0.06 1.12 7.80 -51.93 -0.40 0.72 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.09 2.35 6.08 -51.93 -0.32 2.03 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 51 H 0.07 1.63 7.20 -51.93 -0.37 1.25 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -27.02 378.36 -11.35 -38.37 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -10.11 Total: 2.26 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.72 Total: -18.99 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -1.20 Total: -43.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.02 -11.35 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325567.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.567 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds