Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.53000 * 109.47355 * 299.99988 * 9 7 2 11 11 C 1.53000 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46986 * 59.99679 * 11 10 9 13 13 N 1.46499 * 109.46704 * 179.97438 * 12 11 10 14 14 C 1.37477 * 120.00378 * 274.99726 * 13 12 11 15 15 N 1.30343 * 119.99916 * 0.02562 * 14 13 12 16 16 N 1.37482 * 120.00335 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00414 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47423 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47255 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47259 * 180.02562 * 19 18 17 21 21 N 1.46898 * 109.47212 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47306 * 300.00047 * 12 11 10 23 23 C 1.53000 * 109.47137 * 60.00045 * 22 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 26 26 H 1.09007 * 109.46721 * 300.00289 * 10 9 7 27 27 H 1.08995 * 109.47131 * 59.99934 * 10 9 7 28 28 H 1.09002 * 109.46807 * 299.99967 * 11 10 9 29 29 H 1.09000 * 109.46966 * 179.97438 * 11 10 9 30 30 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 31 31 H 0.97003 * 119.99844 * 95.00570 * 13 12 11 32 32 H 0.97000 * 119.99977 * 179.97438 * 15 14 13 33 33 H 0.97000 * 119.99662 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.47048 * 300.00635 * 17 16 14 35 35 H 1.09006 * 109.46775 * 59.99785 * 17 16 14 36 36 H 1.09000 * 109.47620 * 300.00398 * 18 17 16 37 37 H 1.09008 * 109.46714 * 60.00219 * 18 17 16 38 38 H 1.08999 * 109.46859 * 300.00084 * 19 18 17 39 39 H 1.08997 * 109.47012 * 59.99997 * 19 18 17 40 40 H 1.08999 * 109.46593 * 300.00347 * 20 19 18 41 41 H 1.08999 * 109.46880 * 59.99928 * 20 19 18 42 42 H 1.00899 * 111.00122 * 179.97438 * 21 20 19 43 43 H 1.00899 * 110.99966 * 303.95931 * 21 20 19 44 44 H 1.09002 * 109.47384 * 300.00262 * 22 12 11 45 45 H 1.08995 * 109.47132 * 180.02562 * 22 12 11 46 46 H 1.09000 * 109.46966 * 179.97438 * 23 22 12 47 47 H 1.09002 * 109.46807 * 59.99864 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0163 -0.4699 -1.2617 11 6 5.5463 -0.4704 -1.2684 12 6 6.0557 -1.9131 -1.2743 13 7 7.5207 -1.9136 -1.2814 14 6 8.2025 -1.8073 -2.4705 15 7 7.5454 -1.7055 -3.5916 16 7 9.5773 -1.8082 -2.4771 17 6 10.3038 -1.6944 -3.7442 18 6 11.8093 -1.7200 -3.4729 19 6 12.5681 -1.6017 -4.7963 20 6 14.0736 -1.6280 -4.5251 21 7 14.8021 -1.5150 -5.7958 22 6 5.5510 -2.6374 -0.0247 23 6 4.0210 -2.6368 -0.0180 24 1 -0.4849 0.8401 0.0041 25 1 3.8785 -0.6825 0.8776 26 1 3.6492 -0.9816 -2.1514 27 1 3.6530 0.5578 -1.2577 28 1 5.9137 0.0410 -0.3787 29 1 5.9059 0.0452 -2.1589 30 1 5.6883 -2.4245 -2.1640 31 1 8.0097 -1.9890 -0.4470 32 1 8.0265 -1.6302 -4.4305 33 1 10.0662 -1.8843 -1.6428 34 1 10.0367 -2.5290 -4.3924 35 1 10.0387 -0.7563 -4.2319 36 1 12.0761 -0.8852 -2.8249 37 1 12.0746 -2.6579 -2.9850 38 1 12.3013 -2.4369 -5.4439 39 1 12.3028 -0.6641 -5.2847 40 1 14.3406 -0.7931 -3.8773 41 1 14.3385 -2.5658 -4.0370 42 1 15.7994 -1.5296 -5.6434 43 1 14.5235 -2.2415 -6.4381 44 1 5.9184 -2.1259 0.8650 45 1 5.9143 -3.6650 -0.0287 46 1 3.6614 -3.1532 0.8720 47 1 3.6536 -3.1482 -0.9077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = 4.426728 kcal Electronic energy + Delta-G solvation = -22080.399077 eV Core-core repulsion = 18911.049670 eV Total energy + Delta-G solvation = -3169.349407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.212 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.08764 -37.80962 -36.55133 -34.57453 -32.87627 -31.79430 -30.70376 -30.01095 -29.04547 -27.05051 -24.35335 -22.92352 -22.03194 -21.72954 -20.85348 -20.03302 -18.99774 -17.67210 -16.68355 -16.55899 -16.38335 -15.94291 -15.21435 -15.08328 -14.63667 -14.24250 -14.16417 -13.74480 -13.30352 -13.12298 -12.92478 -12.70454 -12.51459 -12.13610 -12.07875 -11.68974 -11.56670 -11.48189 -11.38585 -11.13032 -10.82250 -10.45038 -10.41556 -9.95983 -9.75631 -9.43504 -9.27269 -9.17405 -9.01185 -8.80327 -8.58404 -8.40906 -7.79701 -5.98353 -3.96350 2.81187 3.27953 3.36604 3.45413 3.48187 3.89936 4.15165 4.31638 4.42106 4.50211 4.75899 4.81554 4.90207 5.14612 5.20434 5.29564 5.35058 5.36979 5.43877 5.46854 5.71330 5.71958 5.76653 5.86307 6.03195 6.19442 6.27082 6.29065 6.36154 6.46168 6.54299 6.55634 6.66802 6.76532 6.84928 6.85947 7.03810 7.09574 7.18974 7.39335 7.57249 7.68705 7.88920 8.09645 8.62517 9.03392 9.06448 9.65285 11.15094 Molecular weight = 282.21amu Principal moments of inertia in cm(-1) A = 0.037978 B = 0.002601 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.091359 B =10762.006118 C =11145.237850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.012 3.988 10 C -0.115 4.115 11 C -0.126 4.126 12 C 0.178 3.822 13 N -0.724 5.724 14 C 0.633 3.367 15 N -0.823 5.823 16 N -0.781 5.781 17 C 0.133 3.867 18 C -0.126 4.126 19 C -0.116 4.116 20 C 0.061 3.939 21 N -0.854 5.854 22 C -0.126 4.126 23 C -0.094 4.094 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.394 0.606 32 H 0.331 0.669 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.342 0.658 43 H 0.341 0.659 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.740 -4.954 -5.899 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.165 4.165 12 C 0.074 3.926 13 N -0.365 5.365 14 C 0.266 3.734 15 N -0.472 5.472 16 N -0.427 5.427 17 C 0.008 3.992 18 C -0.164 4.164 19 C -0.155 4.155 20 C -0.070 4.070 21 N -0.384 5.384 22 C -0.165 4.165 23 C -0.132 4.132 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.228 0.772 32 H 0.147 0.853 33 H 0.219 0.781 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 27.066 -4.104 -6.408 28.115 hybrid contribution 2.241 0.079 0.609 2.324 sum 29.307 -4.025 -5.799 30.145 Atomic orbital electron populations 1.69912 1.06293 1.26769 1.51326 1.25035 0.94675 0.99056 0.94597 0.86823 0.79789 0.83576 0.77861 1.20639 1.22855 1.19109 1.21096 0.89052 0.94346 1.50356 0.90934 1.19179 0.96412 0.91816 0.93224 1.21916 0.92040 1.00109 1.01272 1.21950 0.97646 0.96197 1.00697 1.20842 0.76080 0.96445 0.99253 1.44175 1.06828 1.81667 1.03856 1.18907 0.78216 0.87592 0.88705 1.69804 1.37842 1.41083 0.98431 1.45502 1.04411 1.83900 1.08879 1.21126 0.90908 1.01162 0.86024 1.21672 0.93637 1.02800 0.98300 1.21486 0.93869 1.03231 0.96890 1.21794 0.93873 0.99989 0.91355 1.58685 1.10357 1.55879 1.13433 1.21904 0.98680 0.99033 0.96859 1.21379 0.91137 0.99325 1.01346 0.92834 0.95749 0.91986 0.93746 0.93380 0.92439 0.89120 0.77194 0.85263 0.78059 0.92365 0.92234 0.91090 0.91354 0.91748 0.90643 0.90941 0.95542 0.84535 0.84666 0.92411 0.92739 0.92421 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.72 24.37 -169.99 -4.14 18.58 16 4 H -0.28 -7.06 6.87 56.52 0.39 -6.67 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 7 C -0.51 -14.50 9.14 -34.44 -0.31 -14.81 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.29 1.69 -91.77 -0.16 0.14 16 10 C -0.12 -2.58 4.68 -26.73 -0.13 -2.71 16 11 C -0.13 -2.37 5.50 -26.73 -0.15 -2.52 16 12 C 0.18 2.91 2.45 -67.93 -0.17 2.75 16 13 N -0.72 -9.60 5.19 -55.29 -0.29 -9.89 16 14 C 0.63 8.52 8.69 -320.10 -2.78 5.74 16 15 N -0.82 -13.03 12.84 30.15 0.39 -12.65 16 16 N -0.78 -7.41 5.67 -61.79 -0.35 -7.76 16 17 C 0.13 1.05 5.02 -4.04 -0.02 1.03 16 18 C -0.13 -0.69 5.33 -26.73 -0.14 -0.83 16 19 C -0.12 -0.63 5.47 -26.73 -0.15 -0.78 16 20 C 0.06 0.31 6.79 -3.82 -0.03 0.28 16 21 N -0.85 -4.39 9.62 -10.37 -0.10 -4.49 16 22 C -0.13 -1.99 5.39 -26.73 -0.14 -2.13 16 23 C -0.09 -1.84 5.14 -26.73 -0.14 -1.97 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 26 H 0.06 1.42 8.14 -51.92 -0.42 0.99 16 27 H 0.04 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.68 7.53 -51.93 -0.39 1.29 16 31 H 0.39 4.15 8.70 -40.82 -0.36 3.80 16 32 H 0.33 4.73 7.14 -40.82 -0.29 4.43 16 33 H 0.39 2.86 8.57 -40.82 -0.35 2.51 16 34 H 0.06 0.49 7.97 -51.93 -0.41 0.07 16 35 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.34 1.26 9.08 -39.29 -0.36 0.91 16 43 H 0.34 1.40 8.99 -39.29 -0.35 1.05 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -32.68 361.48 -11.24 -43.92 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.57 Total: 8.22 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -4.40 Total: -13.93 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.42 Total: -62.24 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.68 -11.24 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.345 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds