Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.53003 * 109.46986 * 300.00234 * 9 7 2 11 11 C 1.53005 * 109.47170 * 299.99721 * 10 9 7 12 12 C 1.52994 * 109.47050 * 300.00695 * 11 10 9 13 13 N 1.46903 * 109.46903 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00418 * 84.99606 * 13 12 11 15 15 C 1.52996 * 109.47200 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47329 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47019 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46948 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47293 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47293 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.47290 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47692 * 59.99291 * 12 11 10 23 23 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 26 26 H 1.08998 * 109.47453 * 59.99968 * 10 9 7 27 27 H 1.08996 * 109.47248 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.47484 * 179.97438 * 11 10 9 29 29 H 1.09005 * 109.46707 * 59.99911 * 11 10 9 30 30 H 1.09005 * 109.46726 * 299.99205 * 12 11 10 31 31 H 1.00896 * 110.99678 * 321.03606 * 13 12 11 32 32 H 1.08995 * 109.47053 * 299.99819 * 14 13 12 33 33 H 1.09002 * 109.47059 * 59.99524 * 14 13 12 34 34 H 1.09009 * 109.47181 * 299.99982 * 15 14 13 35 35 H 1.09002 * 109.47484 * 59.99808 * 15 14 13 36 36 H 1.09003 * 109.46678 * 299.99668 * 16 15 14 37 37 H 1.08996 * 109.46841 * 59.99842 * 16 15 14 38 38 H 1.08995 * 109.47128 * 299.99699 * 17 16 15 39 39 H 1.08996 * 109.47461 * 60.00200 * 17 16 15 40 40 H 1.09000 * 109.47507 * 300.00396 * 18 17 16 41 41 H 1.09010 * 109.46733 * 60.00024 * 18 17 16 42 42 H 1.08995 * 109.47286 * 300.00392 * 19 18 17 43 43 H 1.09010 * 109.46880 * 60.00520 * 19 18 17 44 44 H 1.09000 * 109.47507 * 300.00802 * 20 19 18 45 45 H 1.09002 * 109.46779 * 60.00068 * 20 19 18 46 46 H 1.00902 * 110.99589 * 56.04599 * 21 20 19 47 47 H 1.00894 * 111.00101 * 180.02562 * 21 20 19 48 48 H 1.08998 * 109.46987 * 179.97438 * 22 12 11 49 49 H 1.09005 * 109.46648 * 60.00420 * 22 12 11 50 50 H 1.08996 * 109.47365 * 179.97438 * 23 9 7 51 51 H 1.09004 * 109.47330 * 299.99977 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 0.3766 -2.5832 1.2469 11 6 1.2614 -2.5053 2.4927 12 6 2.2557 -3.6681 2.4856 13 7 3.1048 -3.5936 3.6821 14 6 2.4545 -4.2391 4.8303 15 6 3.3673 -4.1420 6.0543 16 6 2.6903 -4.8148 7.2501 17 6 3.6029 -4.7171 8.4742 18 6 2.9256 -5.3894 9.6702 19 6 3.8384 -5.2923 10.8942 20 6 3.1614 -5.9652 12.0899 21 7 4.0375 -5.8714 13.2653 22 6 3.1300 -3.5842 1.2329 23 6 2.2452 -3.6621 -0.0122 24 1 -0.4849 0.8401 0.0041 25 1 0.6206 -2.5548 -0.8933 26 1 -0.3317 -1.7548 1.2519 27 1 -0.1681 -3.5274 1.2471 28 1 0.6385 -2.5647 3.3852 29 1 1.8065 -1.5613 2.4926 30 1 1.7106 -4.6121 2.4857 31 1 3.3473 -2.6375 3.8943 32 1 1.5093 -3.7389 5.0409 33 1 2.2671 -5.2877 4.5995 34 1 4.3124 -4.6425 5.8434 35 1 3.5551 -3.0934 6.2853 36 1 1.7450 -4.3147 7.4612 37 1 2.5029 -5.8634 7.0188 38 1 4.5483 -5.2169 8.2634 39 1 3.7898 -3.6685 8.7053 40 1 1.9802 -4.8893 9.8808 41 1 2.7383 -6.4382 9.4393 42 1 4.7834 -5.7927 10.6833 43 1 4.0260 -4.2437 11.1252 44 1 2.2160 -5.4652 12.3010 45 1 2.9740 -7.0138 11.8587 46 1 4.2780 -4.9113 13.4613 47 1 3.6126 -6.3093 14.0689 48 1 3.8386 -4.4124 1.2282 49 1 3.6751 -2.6402 1.2330 50 1 1.7002 -4.6061 -0.0117 51 1 2.8685 -3.6025 -0.9044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = -58.382464 kcal Electronic energy + Delta-G solvation = -22144.833012 eV Core-core repulsion = 19076.300337 eV Total energy + Delta-G solvation = -3068.532674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.29727 -37.23756 -35.81886 -34.32565 -32.46507 -31.42748 -29.48828 -28.95903 -27.03057 -24.85952 -23.92532 -21.94614 -21.41100 -21.24258 -20.98663 -20.38016 -18.65546 -16.55164 -16.08734 -15.85319 -15.39804 -14.99233 -14.84579 -14.58667 -14.45804 -13.89802 -13.46899 -13.28063 -13.05989 -12.91469 -12.62620 -12.34278 -12.12266 -11.84728 -11.48962 -11.39640 -11.31874 -11.26749 -11.03955 -10.97863 -10.87729 -10.81265 -10.58067 -10.52060 -10.41548 -10.27695 -10.02403 -9.62190 -9.17506 -9.11125 -8.93928 -8.63966 -8.27362 -7.76456 -5.93630 -3.97411 3.30165 3.39005 3.42801 4.02532 4.41580 4.46986 4.57558 4.69000 4.84660 4.86656 5.08288 5.14917 5.17853 5.33125 5.36766 5.46431 5.48845 5.58391 5.62954 5.73961 5.74324 5.81300 5.85129 5.92702 5.93922 6.02584 6.10886 6.14447 6.30644 6.33116 6.38376 6.51336 6.55435 6.59036 6.64704 6.81138 6.83657 6.93269 6.94348 7.17033 7.24200 7.38042 7.54680 7.66782 7.78714 7.87124 7.99238 8.19690 8.53662 9.05695 9.65464 11.12299 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025413 B = 0.002341 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.514515 B =11960.264661 C =12460.533412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.497 4.497 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.104 4.104 11 C -0.126 4.126 12 C 0.093 3.907 13 N -0.691 5.691 14 C 0.059 3.941 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.119 4.119 20 C 0.059 3.941 21 N -0.855 5.855 22 C -0.091 4.091 23 C -0.107 4.107 24 H 0.257 0.743 25 H 0.023 0.977 26 H 0.089 0.911 27 H 0.012 0.988 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.338 0.662 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.340 0.660 47 H 0.341 0.659 48 H 0.041 0.959 49 H 0.068 0.932 50 H 0.031 0.969 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -10.093 19.982 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.143 4.143 11 C -0.164 4.164 12 C -0.016 4.016 13 N -0.320 5.320 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.072 4.072 21 N -0.384 5.384 22 C -0.129 4.129 23 C -0.146 4.146 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.107 0.893 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.358 -10.975 19.380 22.907 hybrid contribution -1.163 2.237 0.703 2.618 sum 4.194 -8.738 20.083 22.299 Atomic orbital electron populations 1.69891 1.05825 1.25957 1.51519 1.24959 0.94766 0.98822 0.95631 0.86667 0.80288 0.84396 0.77454 1.19807 1.21212 1.21264 1.21211 0.92798 0.90400 1.49115 0.92581 1.18700 0.92755 0.92239 0.93918 1.21452 0.98636 0.99186 0.94996 1.22010 0.97858 0.98965 0.97608 1.21578 0.92601 0.97889 0.89519 1.60705 1.44717 1.22689 1.03888 1.21933 0.95337 0.99306 0.90483 1.21573 0.99423 1.00783 0.93695 1.21556 0.98757 1.00938 0.94364 1.21576 0.98981 1.00779 0.94203 1.21569 0.98669 1.01115 0.94369 1.21599 0.99581 1.00587 0.93947 1.21846 0.93560 1.00902 0.90904 1.58718 1.48706 1.22994 1.07974 1.21330 0.97181 1.01126 0.93306 1.21552 0.98268 0.98412 0.96326 0.93314 0.95875 0.89295 0.96932 0.95475 0.91033 0.92263 0.84454 0.95584 0.91704 0.91330 0.92301 0.92214 0.92024 0.91895 0.92101 0.92151 0.91901 0.91141 0.92234 0.95649 0.91060 0.84779 0.84727 0.94037 0.91337 0.94988 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 11.33 55.43 0.63 -24.69 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 3 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16 8 H 0.06 1.49 6.71 -52.49 -0.35 1.14 16 9 C 0.04 1.04 2.59 -91.77 -0.24 0.81 16 10 C -0.10 -2.45 5.24 -26.73 -0.14 -2.59 16 11 C -0.13 -2.61 4.95 -26.73 -0.13 -2.75 16 12 C 0.09 1.72 2.47 -67.71 -0.17 1.55 16 13 N -0.69 -11.08 6.25 -106.73 -0.67 -11.74 16 14 C 0.06 0.81 5.48 -3.83 -0.02 0.79 16 15 C -0.12 -1.31 5.47 -26.73 -0.15 -1.46 16 16 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 17 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 18 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 19 C -0.12 -0.84 5.47 -26.73 -0.15 -0.99 16 20 C 0.06 0.39 6.79 -3.82 -0.03 0.36 16 21 N -0.85 -5.35 9.62 -10.37 -0.10 -5.45 16 22 C -0.09 -1.79 5.30 -26.76 -0.14 -1.93 16 23 C -0.11 -2.26 5.41 -26.76 -0.14 -2.41 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.36 6.08 -51.93 -0.32 2.04 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.03 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.07 1.64 7.20 -51.93 -0.37 1.27 16 30 H 0.06 1.09 7.80 -51.93 -0.40 0.69 16 31 H 0.34 5.42 8.47 -39.29 -0.33 5.08 16 32 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 33 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.34 1.77 8.99 -39.29 -0.35 1.42 16 47 H 0.34 1.59 9.08 -39.30 -0.36 1.24 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 50 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -27.67 385.41 -11.74 -39.41 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -10.35 Total: 4.44 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -2.04 Total: -23.94 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.14 Total: -41.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.67 -11.74 -39.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.970 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds