Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47014 * 111.03599 * 2 1 4 4 C 1.53096 * 109.29464 * 177.65209 * 3 2 1 5 5 O 1.43019 * 109.26070 * 56.82690 * 4 3 2 6 6 C 1.43015 * 113.73546 * 301.33348 * 5 4 3 7 7 C 1.47015 * 110.99729 * 236.34285 * 2 1 3 8 8 H 1.08996 * 109.50814 * 62.41794 * 7 2 1 9 9 C 1.53000 * 109.50653 * 302.32274 * 7 2 1 10 10 N 1.46905 * 109.46634 * 175.98010 * 9 7 2 11 11 C 1.46901 * 110.99572 * 174.88438 * 10 9 7 12 12 C 1.52998 * 109.47411 * 155.00192 * 11 10 9 13 13 C 1.53004 * 109.47347 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46734 * 299.99811 * 13 12 11 15 15 C 1.50702 * 109.46578 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99504 * 273.08934 * 15 14 13 17 17 C 1.37878 * 120.00068 * 93.10151 * 15 14 13 18 18 N 1.31518 * 119.99837 * 352.61452 * 17 15 14 19 19 Si 1.86797 * 119.99907 * 172.61908 * 17 15 14 20 20 H 1.48498 * 109.47189 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47331 * 119.99541 * 19 17 15 22 22 H 1.48503 * 109.47093 * 239.99630 * 19 17 15 23 23 C 1.52998 * 109.47049 * 60.00007 * 14 13 12 24 24 C 1.52994 * 109.47376 * 299.99590 * 23 14 13 25 25 H 1.09002 * 109.47221 * 190.50656 * 1 2 3 26 26 H 1.09004 * 109.46631 * 310.50363 * 1 2 3 27 27 H 1.08999 * 109.46922 * 70.50420 * 1 2 3 28 28 H 1.08998 * 109.51059 * 57.69186 * 3 2 1 29 29 H 1.09003 * 109.50930 * 297.61076 * 3 2 1 30 30 H 1.09000 * 109.50485 * 296.89249 * 4 3 2 31 31 H 1.09003 * 109.51058 * 176.76002 * 4 3 2 32 32 H 1.09000 * 109.50361 * 298.73247 * 6 5 4 33 33 H 1.09005 * 109.50836 * 178.60178 * 6 5 4 34 34 H 1.09005 * 109.46705 * 55.98503 * 9 7 2 35 35 H 1.08994 * 109.47244 * 295.98021 * 9 7 2 36 36 H 1.00901 * 111.00031 * 298.83289 * 10 9 7 37 37 H 1.09004 * 109.47574 * 34.99631 * 11 10 9 38 38 H 1.08995 * 109.46934 * 59.99174 * 12 11 10 39 39 H 1.09000 * 109.46807 * 299.99393 * 12 11 10 40 40 H 1.09003 * 109.47026 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47054 * 59.99550 * 13 12 11 42 42 H 1.09004 * 109.46842 * 300.00116 * 14 13 12 43 43 H 0.96999 * 119.99817 * 4.43370 * 18 17 15 44 44 H 1.08995 * 109.46934 * 60.00375 * 23 14 13 45 45 H 1.09004 * 109.46585 * 179.97438 * 23 14 13 46 46 H 1.09004 * 109.47558 * 300.00530 * 24 23 14 47 47 H 1.08997 * 109.47105 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3722 0.0000 4 6 3.5259 1.3261 0.0592 5 8 4.0176 0.5569 -1.0417 6 6 3.5250 -0.7854 -1.0718 7 6 1.9958 -0.7607 -1.1425 8 1 1.6821 -0.2855 -2.0719 9 6 1.4590 -2.1926 -1.0940 10 7 1.9075 -2.9242 -2.2863 11 6 1.5130 -4.3375 -2.2160 12 6 1.4130 -4.9101 -3.6313 13 6 1.0027 -6.3823 -3.5580 14 6 2.0508 -7.1649 -2.7642 15 6 1.6469 -8.6150 -2.6926 16 1 0.9903 -8.9544 -1.9052 17 6 2.1159 -9.5084 -3.6322 18 7 2.7949 -9.0739 -4.6714 19 14 1.7869 -11.3360 -3.4292 20 1 1.0079 -11.5635 -2.1856 21 1 1.0137 -11.8323 -4.5958 22 1 3.0779 -12.0650 -3.3446 23 6 2.1508 -6.5922 -1.3489 24 6 2.5611 -5.1201 -1.4221 25 1 -0.3634 -1.0104 0.1874 26 1 -0.3633 0.6675 0.7815 27 1 -0.3633 0.3430 -0.9687 28 1 1.6149 1.9090 0.8683 29 1 1.6830 1.8829 -0.9104 30 1 3.8401 0.8641 0.9951 31 1 3.9231 2.3395 0.0014 32 1 3.8392 -1.3087 -0.1687 33 1 3.9215 -1.2991 -1.9476 34 1 0.3694 -2.1714 -1.0692 35 1 1.8332 -2.6909 -0.1998 36 1 1.5574 -2.4925 -3.1285 37 1 0.5453 -4.4205 -1.7212 38 1 2.3807 -4.8271 -4.1260 39 1 0.6667 -4.3524 -4.1970 40 1 0.9310 -6.7901 -4.5664 41 1 0.0351 -6.4656 -3.0631 42 1 3.0184 -7.0814 -3.2591 43 1 3.0211 -8.1335 -4.7441 44 1 1.1832 -6.6757 -0.8540 45 1 2.8971 -7.1501 -0.7832 46 1 3.5286 -5.0367 -1.9171 47 1 2.6319 -4.7121 -0.4139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -61.308648 kcal Electronic energy + Delta-G solvation = -23144.621614 eV Core-core repulsion = 19940.128956 eV Total energy + Delta-G solvation = -3204.492658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01461 -38.30362 -36.26451 -34.98368 -32.76965 -31.22173 -29.97918 -29.15287 -28.04586 -25.68317 -24.36871 -23.77619 -22.49727 -21.68847 -20.61841 -20.25509 -18.98195 -16.75330 -16.66191 -16.57174 -15.81654 -15.42288 -15.18829 -14.82800 -14.30581 -14.01875 -13.90584 -13.69094 -13.50754 -13.24177 -13.08445 -12.75339 -12.37377 -12.21603 -11.78154 -11.61365 -11.43980 -11.40911 -11.21482 -11.10768 -10.75781 -10.67945 -10.42305 -10.28456 -10.16328 -10.09537 -9.81140 -9.37531 -9.05309 -8.71390 -8.45332 -8.28800 -8.15050 -6.31127 -3.99317 3.38932 3.45776 3.49148 3.62795 3.70214 4.29725 4.54770 4.56492 4.68198 4.74740 4.90761 4.95514 5.08327 5.16704 5.21322 5.27631 5.34640 5.37392 5.47821 5.49547 5.51765 5.62633 5.67180 5.78460 5.79650 5.96919 6.07669 6.14822 6.21159 6.30237 6.41817 6.46776 6.61433 6.66751 6.74808 6.77890 6.91343 6.98799 7.02679 7.17354 7.28538 7.46449 7.58337 7.72324 8.33216 8.51450 8.95662 9.72589 11.09048 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039867 B = 0.003022 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.161122 B = 9264.536590 C = 9438.131587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.019 3.981 4 C 0.062 3.938 5 O -0.388 6.388 6 C 0.077 3.923 7 C 0.054 3.946 8 H 0.047 0.953 9 C 0.067 3.933 10 N -0.688 5.688 11 C 0.096 3.904 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.030 3.970 15 C -0.593 4.593 16 H 0.047 0.953 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 1.070 2.930 20 H -0.290 1.290 21 H -0.289 1.289 22 H -0.287 1.287 23 C -0.103 4.103 24 C -0.103 4.103 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.336 0.664 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.271 0.729 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 20.524 8.590 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.109 4.109 4 C -0.015 4.015 5 O -0.306 6.306 6 C 0.001 3.999 7 C -0.055 4.055 8 H 0.065 0.935 9 C -0.063 4.063 10 N -0.319 5.319 11 C -0.012 4.012 12 C -0.158 4.158 13 C -0.141 4.141 14 C 0.011 3.989 15 C -0.631 4.631 16 H 0.065 0.935 17 C -0.186 4.186 18 N -0.552 5.552 19 Si 0.899 3.101 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.141 4.141 24 C -0.141 4.141 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.154 0.846 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.642 18.780 8.406 20.641 hybrid contribution -1.875 1.926 0.070 2.689 sum -3.518 20.707 8.476 22.649 Atomic orbital electron populations 1.22440 0.87065 1.02874 1.00277 1.62157 1.08159 1.13262 1.42794 1.22796 0.96813 0.89756 1.01526 1.22641 0.91956 0.96504 0.90446 1.88006 1.69969 1.24592 1.48070 1.22698 0.91048 0.82670 1.03533 1.22293 0.96946 0.94515 0.91702 0.93458 1.21946 0.97004 0.92093 0.95241 1.60471 1.64493 1.03060 1.03847 1.21517 0.96661 0.85812 0.97257 1.21805 1.01016 0.98438 0.94503 1.21702 0.99986 0.91382 1.01071 1.18877 0.94900 0.94469 0.90639 1.22011 1.32498 0.93239 1.15381 0.93509 1.25789 0.94570 1.05688 0.92506 1.70742 1.38496 1.18754 1.27209 0.83534 0.76266 0.74882 0.75396 1.21629 1.21532 1.21384 1.21585 0.99628 0.92712 1.00221 1.21567 0.98545 0.95914 0.98047 0.90738 0.91352 0.95527 0.89710 0.94105 0.92313 0.88670 0.92387 0.86973 0.95005 0.89984 0.84620 0.94469 0.91781 0.93972 0.92830 0.93983 0.94777 0.91742 0.93919 0.93012 0.91958 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.00 60.07 0.54 0.73 16 2 N -0.54 -5.43 4.80 -234.57 -1.12 -6.55 16 3 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16 4 C 0.06 0.56 7.01 37.21 0.26 0.82 16 5 O -0.39 -4.69 10.83 -35.23 -0.38 -5.07 16 6 C 0.08 0.91 6.13 37.21 0.23 1.14 16 7 C 0.05 0.60 2.23 -67.60 -0.15 0.45 16 8 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.07 0.79 4.68 -3.82 -0.02 0.78 16 10 N -0.69 -9.08 5.76 -106.72 -0.62 -9.70 16 11 C 0.10 1.54 2.49 -67.71 -0.17 1.37 16 12 C -0.12 -2.11 5.19 -26.73 -0.14 -2.25 16 13 C -0.10 -2.25 5.19 -26.73 -0.14 -2.39 16 14 C 0.03 0.73 1.88 -91.77 -0.17 0.56 16 15 C -0.59 -16.49 8.30 -34.44 -0.29 -16.77 16 16 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 17 C 0.02 0.53 5.45 -17.82 -0.10 0.43 16 18 N -0.92 -27.49 13.62 55.43 0.76 -26.73 16 19 Si 1.07 25.36 29.91 -169.99 -5.08 20.27 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.10 -2.16 5.19 -26.74 -0.14 -2.30 16 24 C -0.10 -1.80 5.42 -26.73 -0.14 -1.94 16 25 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 26 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 27 H 0.03 0.23 8.11 -51.93 -0.42 -0.19 16 28 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.38 7.83 -51.93 -0.41 0.97 16 34 H 0.03 0.37 6.31 -51.93 -0.33 0.04 16 35 H 0.08 1.07 7.33 -51.93 -0.38 0.69 16 36 H 0.34 4.13 8.40 -39.29 -0.33 3.80 16 37 H 0.04 0.61 7.86 -51.93 -0.41 0.21 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.91 6.60 -51.93 -0.34 0.57 16 43 H 0.27 8.07 6.65 -40.82 -0.27 7.80 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.04 0.71 7.38 -51.93 -0.38 0.33 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -29.62 354.70 -10.28 -39.90 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.73 Total: 1.79 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.44 Total: -19.25 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.98 Total: -42.98 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.62 -10.28 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.410 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds