Wall clock time and date at job start Tue Mar 31 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47017 * 111.00081 * 2 1 4 4 C 1.53089 * 109.25794 * 182.39397 * 3 2 1 5 5 O 1.43019 * 109.26012 * 303.15292 * 4 3 2 6 6 C 1.43006 * 113.73713 * 58.67290 * 5 4 3 7 7 C 1.47108 * 110.98731 * 123.65764 * 2 1 3 8 8 H 1.08997 * 109.49488 * 297.52029 * 7 2 1 9 9 C 1.52998 * 109.56581 * 57.68727 * 7 2 1 10 10 N 1.46905 * 109.47040 * 54.41415 * 9 7 2 11 11 C 1.46899 * 110.99583 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47188 * 274.99947 * 11 10 9 13 13 C 1.53004 * 109.47387 * 300.00057 * 12 11 10 14 14 C 1.53000 * 109.47104 * 300.00552 * 13 12 11 15 15 C 1.50699 * 109.47183 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99520 * 239.99889 * 15 14 13 17 17 C 1.37879 * 119.99870 * 59.99356 * 15 14 13 18 18 N 1.31511 * 120.00231 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99428 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47413 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47144 * 120.00161 * 19 17 15 22 22 H 1.48506 * 109.46977 * 240.00003 * 19 17 15 23 23 C 1.52997 * 109.47449 * 59.99486 * 14 13 12 24 24 C 1.53002 * 109.47035 * 155.00134 * 11 10 9 25 25 H 1.08995 * 109.47406 * 53.81672 * 1 2 3 26 26 H 1.09002 * 109.47372 * 173.81860 * 1 2 3 27 27 H 1.09002 * 109.46969 * 293.81350 * 1 2 3 28 28 H 1.08996 * 109.50257 * 62.45907 * 3 2 1 29 29 H 1.09001 * 109.50629 * 302.33434 * 3 2 1 30 30 H 1.09007 * 109.50613 * 183.21746 * 4 3 2 31 31 H 1.08998 * 109.50951 * 63.08676 * 4 3 2 32 32 H 1.08997 * 109.51406 * 61.26708 * 6 5 4 33 33 H 1.09008 * 109.50688 * 181.35565 * 6 5 4 34 34 H 1.09004 * 109.47026 * 174.41564 * 9 7 2 35 35 H 1.08994 * 109.47248 * 294.41492 * 9 7 2 36 36 H 1.00894 * 110.99733 * 303.95279 * 10 9 7 37 37 H 1.09000 * 109.47752 * 34.99985 * 11 10 9 38 38 H 1.08995 * 109.47408 * 60.00224 * 12 11 10 39 39 H 1.09004 * 109.47275 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47317 * 179.97438 * 13 12 11 41 41 H 1.09004 * 109.46513 * 60.00024 * 13 12 11 42 42 H 1.09008 * 109.46743 * 299.99593 * 14 13 12 43 43 H 0.97003 * 119.99613 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.47181 * 180.02562 * 23 14 13 45 45 H 1.08996 * 109.47347 * 60.00138 * 23 14 13 46 46 H 1.08996 * 109.47168 * 179.97438 * 24 11 10 47 47 H 1.08999 * 109.46797 * 300.00122 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5573 1.0402 6 6 3.5250 -0.7849 1.0708 7 6 1.9959 -0.7612 1.1432 8 1 1.6829 -0.2852 2.0725 9 6 1.4599 -2.1935 1.0959 10 7 1.7704 -2.7896 -0.2104 11 6 1.2702 -4.1683 -0.2920 12 6 2.3014 -5.1219 0.3147 13 6 3.6168 -5.0100 -0.4588 14 6 3.3797 -5.3804 -1.9242 15 6 4.6751 -5.2696 -2.6862 16 1 4.7546 -4.5874 -3.5198 17 6 5.7589 -6.0389 -2.3191 18 7 5.6619 -6.8698 -1.3044 19 14 7.3647 -5.9009 -3.2633 20 1 7.2143 -4.9031 -4.3528 21 1 8.4455 -5.4687 -2.3413 22 1 7.7109 -7.2219 -3.8469 23 6 2.3485 -4.4269 -2.5310 24 6 1.0332 -4.5389 -1.7575 25 1 -0.3634 0.6067 -0.8294 26 1 -0.3634 -1.0217 -0.1107 27 1 -0.3633 0.4149 0.9402 28 1 1.6828 1.8825 0.9110 29 1 1.6133 1.9092 -0.8681 30 1 3.9221 2.3399 -0.0030 31 1 3.8385 0.8644 -0.9965 32 1 3.8385 -1.3084 0.1676 33 1 3.9228 -1.2988 1.9459 34 1 1.9277 -2.7827 1.8847 35 1 0.3799 -2.1823 1.2426 36 1 1.4022 -2.2258 -0.9617 37 1 0.3331 -4.2482 0.2590 38 1 2.4703 -4.8579 1.3587 39 1 1.9304 -6.1450 0.2537 40 1 4.3516 -5.6889 -0.0262 41 1 3.9879 -3.9869 -0.3981 42 1 3.0085 -6.4035 -1.9848 43 1 6.4245 -7.4107 -1.0460 44 1 2.1793 -4.6911 -3.5749 45 1 2.7197 -3.4039 -2.4704 46 1 0.6624 -5.5621 -1.8181 47 1 0.2985 -3.8596 -2.1897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:58 Heat of formation + Delta-G solvation = -49.193961 kcal Electronic energy + Delta-G solvation = -24200.325646 eV Core-core repulsion = 20996.358320 eV Total energy + Delta-G solvation = -3203.967325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85669 -38.09873 -36.01993 -34.22976 -32.51325 -30.82601 -29.59707 -29.03194 -28.18094 -25.46101 -24.21301 -24.14774 -22.44545 -21.36210 -20.47642 -19.73386 -18.03859 -16.47606 -16.33448 -16.17638 -15.49900 -15.29396 -14.88859 -14.67017 -14.43943 -14.24507 -13.79497 -13.59108 -13.05308 -12.67247 -12.50483 -12.30056 -12.16668 -11.97451 -11.83903 -11.43932 -11.35260 -11.19275 -10.98790 -10.89523 -10.61208 -10.52886 -10.38071 -10.11838 -9.96480 -9.63542 -9.54344 -9.15022 -8.74172 -8.47313 -8.41615 -8.11244 -7.77767 -5.82602 -3.87199 3.38478 3.46429 3.50657 3.66530 3.95164 4.51485 4.57002 4.81728 4.85125 4.94098 5.14077 5.22206 5.28391 5.38379 5.38923 5.47046 5.52325 5.55205 5.62921 5.66092 5.79236 5.80078 5.81234 5.86229 5.96884 6.25667 6.27857 6.43190 6.50760 6.59647 6.64683 6.83560 6.86809 6.89234 6.97400 7.14273 7.24617 7.38910 7.55676 7.65134 7.78942 7.93232 7.97773 8.28637 8.38816 8.67986 9.17288 9.76181 11.22670 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.005194 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.324252 B = 5389.519297 C = 6210.333800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.021 3.979 4 C 0.063 3.937 5 O -0.391 6.391 6 C 0.071 3.929 7 C 0.055 3.945 8 H 0.045 0.955 9 C 0.068 3.932 10 N -0.661 5.661 11 C 0.094 3.906 12 C -0.105 4.105 13 C -0.096 4.096 14 C 0.052 3.948 15 C -0.503 4.503 16 H 0.051 0.949 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.287 1.287 23 C -0.101 4.101 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.346 0.654 37 H 0.020 0.980 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.016 0.984 43 H 0.256 0.744 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 13.709 5.105 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.256 5.256 3 C -0.107 4.107 4 C -0.014 4.014 5 O -0.310 6.310 6 C -0.005 4.005 7 C -0.054 4.054 8 H 0.063 0.937 9 C -0.062 4.062 10 N -0.294 5.294 11 C -0.015 4.015 12 C -0.143 4.143 13 C -0.134 4.134 14 C 0.033 3.967 15 C -0.542 4.542 16 H 0.070 0.930 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.213 1.213 23 C -0.138 4.138 24 C -0.155 4.155 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.167 0.833 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.724 13.230 5.082 17.188 hybrid contribution -0.695 0.465 0.058 0.838 sum -10.419 13.695 5.140 17.959 Atomic orbital electron populations 1.22413 0.87551 1.02402 1.00189 1.62162 1.07514 1.13116 1.42815 1.22771 0.96975 0.89778 1.01155 1.22613 0.91762 0.96233 0.90795 1.87949 1.70132 1.24707 1.48173 1.22725 0.90684 0.82832 1.04306 1.22415 0.97257 0.94376 0.91336 0.93727 1.21933 0.96971 0.92840 0.94430 1.60345 1.63895 1.02321 1.02882 1.21508 0.94860 0.89016 0.96163 1.21606 0.98257 0.96466 0.97986 1.21413 0.93971 1.01096 0.96897 1.18604 0.92451 0.93294 0.92321 1.21279 0.96584 1.22025 1.14290 0.93026 1.24939 0.98455 0.95464 0.95158 1.69907 1.30383 1.25696 1.27172 0.86661 0.84367 0.77616 0.80066 1.19939 1.21186 1.21329 1.21521 0.93985 1.01400 0.96917 1.21727 0.98879 1.00157 0.94721 0.91347 0.91210 0.95855 0.94484 0.89852 0.88975 0.91853 0.89665 0.88765 0.90476 0.95951 0.83320 0.96163 0.94491 0.93446 0.90191 0.93304 0.96611 0.93418 0.94467 0.92372 0.92382 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.89 60.06 0.53 0.76 16 2 N -0.53 -6.16 3.91 -234.50 -0.92 -7.08 16 3 C 0.02 0.22 5.66 -3.71 -0.02 0.20 16 4 C 0.06 0.73 7.01 37.20 0.26 0.99 16 5 O -0.39 -5.61 10.83 -35.23 -0.38 -5.99 16 6 C 0.07 1.01 6.21 37.21 0.23 1.24 16 7 C 0.05 0.68 2.36 -67.55 -0.16 0.52 16 8 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 9 C 0.07 0.89 4.54 -3.82 -0.02 0.87 16 10 N -0.66 -10.05 4.24 -106.72 -0.45 -10.50 16 11 C 0.09 1.55 2.82 -67.71 -0.19 1.36 16 12 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 13 C -0.10 -2.26 4.82 -26.73 -0.13 -2.38 16 14 C 0.05 1.29 2.10 -91.77 -0.19 1.10 16 15 C -0.50 -14.06 8.56 -34.44 -0.29 -14.35 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.95 11.32 55.43 0.63 -25.32 16 19 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.10 -2.10 4.98 -26.73 -0.13 -2.23 16 24 C -0.12 -2.02 5.30 -26.73 -0.14 -2.16 16 25 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.07 0.71 6.24 -51.93 -0.32 0.39 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.41 7.69 -51.93 -0.40 1.01 16 33 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.08 1.04 7.44 -51.93 -0.39 0.65 16 35 H 0.02 0.27 6.68 -51.93 -0.35 -0.07 16 36 H 0.35 5.24 6.84 -39.30 -0.27 4.97 16 37 H 0.02 0.31 7.80 -51.93 -0.41 -0.09 16 38 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.05 1.18 7.60 -51.93 -0.39 0.78 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.23 7.48 -51.93 -0.39 0.85 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -28.94 348.35 -10.04 -38.98 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.65 Total: 2.54 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.50 Total: -14.67 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.74 Total: -42.89 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.94 -10.04 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.210 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds