Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00070 * 2 1 4 4 C 1.46903 * 111.00149 * 123.95253 * 2 1 3 5 5 C 1.52999 * 109.47141 * 85.96068 * 4 2 1 6 6 C 1.53003 * 109.47008 * 54.62556 * 5 4 2 7 7 C 1.53005 * 109.46959 * 294.62955 * 5 4 2 8 8 C 1.52995 * 109.47514 * 174.62844 * 5 4 2 9 9 N 1.46897 * 109.47507 * 179.97438 * 8 5 4 10 10 C 1.46900 * 111.00132 * 179.97438 * 9 8 5 11 11 C 1.53001 * 109.47274 * 205.00172 * 10 9 8 12 12 C 1.52994 * 109.47073 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47027 * 60.00198 * 12 11 10 14 14 C 1.50699 * 109.47142 * 60.00250 * 13 12 11 15 15 H 1.07995 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99913 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00077 * 359.72017 * 16 14 13 18 18 Si 1.86800 * 119.99841 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47241 * 59.99669 * 18 16 14 20 20 H 1.48501 * 109.47161 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47035 * 299.99658 * 18 16 14 22 22 C 1.52993 * 109.47206 * 299.99636 * 13 12 11 23 23 C 1.53001 * 109.46744 * 85.00419 * 10 9 8 24 24 H 1.08998 * 109.47198 * 289.27678 * 1 2 3 25 25 H 1.08993 * 109.46873 * 49.28267 * 1 2 3 26 26 H 1.09000 * 109.46450 * 169.28095 * 1 2 3 27 27 H 1.08999 * 109.47713 * 183.95145 * 3 2 1 28 28 H 1.09003 * 109.47611 * 303.95610 * 3 2 1 29 29 H 1.09000 * 109.47349 * 63.95113 * 3 2 1 30 30 H 1.08994 * 109.46979 * 325.95959 * 4 2 1 31 31 H 1.09002 * 109.47165 * 205.95971 * 4 2 1 32 32 H 1.08998 * 109.47059 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.47238 * 300.00361 * 6 5 4 34 34 H 1.09003 * 109.46906 * 60.00384 * 6 5 4 35 35 H 1.08995 * 109.47092 * 313.09141 * 7 5 4 36 36 H 1.09004 * 109.46758 * 73.08973 * 7 5 4 37 37 H 1.08997 * 109.47066 * 193.08600 * 7 5 4 38 38 H 1.09005 * 109.46823 * 59.99482 * 8 5 4 39 39 H 1.08997 * 109.47324 * 300.00386 * 8 5 4 40 40 H 1.00902 * 111.00213 * 303.95787 * 9 8 5 41 41 H 1.09000 * 109.47416 * 325.00622 * 10 9 8 42 42 H 1.08995 * 109.46825 * 60.00611 * 11 10 9 43 43 H 1.09000 * 109.47266 * 300.00542 * 11 10 9 44 44 H 1.09000 * 109.47335 * 300.00276 * 12 11 10 45 45 H 1.08997 * 109.47425 * 180.02562 * 12 11 10 46 46 H 1.09004 * 109.47116 * 179.97438 * 13 12 11 47 47 H 0.96999 * 120.00375 * 180.02562 * 17 16 14 48 48 H 1.09005 * 109.47067 * 179.97438 * 22 13 12 49 49 H 1.09001 * 109.47737 * 300.00388 * 22 13 12 50 50 H 1.09002 * 109.47389 * 300.00348 * 23 10 9 51 51 H 1.09000 * 109.46999 * 59.99946 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 2.0834 -2.2458 0.7591 6 6 2.9076 -2.3967 -0.5211 7 6 0.6752 -2.7974 0.5270 8 6 2.7552 -3.0232 1.8928 9 7 2.8391 -4.4441 1.5296 10 6 3.4807 -5.2233 2.5969 11 6 4.1088 -6.4845 2.0006 12 6 4.7765 -7.2963 3.1123 13 6 3.7285 -7.6923 4.1544 14 6 2.6574 -8.5250 3.4984 15 1 2.7178 -8.7490 2.4437 16 6 1.5997 -8.9999 4.2446 17 7 1.5285 -8.7309 5.5299 18 14 0.2717 -10.0315 3.4313 19 1 0.8809 -11.2558 2.8525 20 1 -0.7461 -10.4149 4.4425 21 1 -0.3760 -9.2432 2.3521 22 6 3.1005 -6.4311 4.7508 23 6 2.4332 -5.6192 3.6394 24 1 -0.3633 0.3393 0.9700 25 1 -0.3633 0.6703 -0.7789 26 1 -0.3632 -1.0098 -0.1911 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9164 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.3307 -0.6487 1.9934 31 1 2.9883 -0.3973 1.3955 32 1 2.9706 -3.4509 -0.7905 33 1 2.4290 -1.8428 -1.3287 34 1 3.9108 -2.0037 -0.3557 35 1 0.0239 -2.4858 1.3435 36 1 0.2854 -2.4132 -0.4156 37 1 0.7134 -3.8859 0.4878 38 1 2.1680 -2.9156 2.8048 39 1 3.7583 -2.6303 2.0582 40 1 1.9272 -4.8153 1.3086 41 1 4.2555 -4.6208 3.0711 42 1 4.8550 -6.2024 1.2579 43 1 3.3340 -7.0870 1.5264 44 1 5.5512 -6.6941 3.5868 45 1 5.2243 -8.1946 2.6874 46 1 4.2041 -8.2710 4.9462 47 1 0.7847 -9.0653 6.0550 48 1 2.3536 -6.7132 5.4929 49 1 3.8752 -5.8288 5.2253 50 1 1.9856 -4.7207 4.0643 51 1 1.6583 -6.2216 3.1653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -15.250955 kcal Electronic energy + Delta-G solvation = -23902.443396 eV Core-core repulsion = 20835.781044 eV Total energy + Delta-G solvation = -3066.662352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.18130 -37.91928 -35.74736 -33.32379 -31.65020 -29.45983 -28.46347 -28.07729 -27.05693 -26.61912 -25.12036 -24.04029 -21.87897 -21.36275 -20.48828 -18.98651 -18.42311 -16.17176 -15.64516 -15.52848 -15.36183 -14.86018 -14.44694 -14.30302 -13.99253 -13.57244 -13.34526 -13.10286 -12.96397 -12.71147 -12.61567 -12.46103 -12.00169 -11.91457 -11.62746 -11.46867 -11.36523 -11.27165 -11.03876 -10.93544 -10.83390 -10.67893 -10.55623 -10.47811 -10.28676 -10.19681 -9.98991 -9.60307 -9.10031 -8.91646 -8.64169 -8.47509 -8.25702 -7.70543 -5.92469 -3.96473 3.33369 3.38488 3.41303 3.75876 4.47600 4.63461 4.80909 4.90831 5.04405 5.08720 5.17563 5.23784 5.36328 5.37794 5.50589 5.53014 5.62713 5.66334 5.68536 5.72003 5.82622 5.89580 5.92916 6.00436 6.15434 6.17229 6.20271 6.39785 6.41832 6.49301 6.53451 6.56860 6.60726 6.67274 6.82555 6.85245 6.87964 6.88423 6.94976 7.19049 7.25859 7.39979 7.56336 7.69432 7.79830 7.90441 8.00767 8.20760 8.54647 9.06261 9.66349 11.13377 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.003794 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.245119 B = 7378.761921 C = 7872.016948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.539 5.539 3 C 0.025 3.975 4 C 0.063 3.937 5 C -0.054 4.054 6 C -0.117 4.117 7 C -0.147 4.147 8 C 0.070 3.930 9 N -0.684 5.684 10 C 0.094 3.906 11 C -0.090 4.090 12 C -0.107 4.107 13 C 0.044 3.956 14 C -0.499 4.499 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.884 3.116 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.104 4.104 23 C -0.125 4.125 24 H 0.022 0.978 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.338 0.662 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.022 0.978 47 H 0.258 0.742 48 H 0.088 0.912 49 H 0.011 0.989 50 H 0.026 0.974 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 17.046 -9.131 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.263 5.263 3 C -0.124 4.124 4 C -0.065 4.065 5 C -0.055 4.055 6 C -0.175 4.175 7 C -0.204 4.204 8 C -0.061 4.061 9 N -0.315 5.315 10 C -0.015 4.015 11 C -0.129 4.129 12 C -0.145 4.145 13 C 0.025 3.975 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.142 4.142 23 C -0.164 4.164 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.030 0.970 50 H 0.045 0.955 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.370 16.869 -9.774 19.500 hybrid contribution -1.857 -0.092 1.215 2.221 sum -1.487 16.777 -8.559 18.893 Atomic orbital electron populations 1.22814 0.87603 1.03616 0.99849 1.61883 1.07786 1.13114 1.43489 1.22413 1.00712 0.89138 1.00096 1.22246 0.99504 0.94054 0.90736 1.20508 0.95784 0.92589 0.96589 1.21563 0.98165 1.01813 0.95940 1.22126 0.95797 1.01273 1.01239 1.21900 0.99484 0.89599 0.95085 1.60720 1.27257 1.01270 1.42256 1.21564 0.95922 0.94029 0.90001 1.21325 0.99214 0.95075 0.97238 1.21559 0.97910 0.97655 0.97425 1.18679 0.92722 0.92922 0.93141 1.21139 1.06612 1.30777 0.95182 0.92690 1.24941 0.98038 0.96278 0.94778 1.69863 1.31496 1.46004 1.05865 0.86793 0.81870 0.81050 0.79087 1.20388 1.21516 1.20393 1.21439 0.99329 0.95787 0.97682 1.21999 0.98709 0.97868 0.97826 0.95896 0.91994 0.89705 0.91417 0.91625 0.96025 0.94407 0.91311 0.91999 0.92423 0.93971 0.93526 0.91653 0.92187 0.95779 0.91658 0.84192 0.92310 0.94011 0.91396 0.95034 0.93557 0.95968 0.93204 0.89352 0.96984 0.95546 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.09 60.07 0.55 0.63 16 2 N -0.54 -5.28 3.87 -251.26 -0.97 -6.25 16 3 C 0.02 0.20 9.43 60.06 0.57 0.77 16 4 C 0.06 0.66 4.23 -3.82 -0.02 0.65 16 5 C -0.05 -0.62 0.67 -154.51 -0.10 -0.73 16 6 C -0.12 -1.41 8.06 37.16 0.30 -1.11 16 7 C -0.15 -1.68 6.96 37.16 0.26 -1.42 16 8 C 0.07 0.94 4.45 -3.83 -0.02 0.93 16 9 N -0.68 -10.65 5.46 -106.73 -0.58 -11.24 16 10 C 0.09 1.70 2.47 -67.71 -0.17 1.54 16 11 C -0.09 -1.75 5.30 -26.73 -0.14 -1.89 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 13 C 0.04 1.08 2.58 -91.78 -0.24 0.84 16 14 C -0.50 -13.24 6.61 -34.44 -0.23 -13.47 16 15 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.31 11.33 55.43 0.63 -24.68 16 18 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.10 -2.43 5.23 -26.76 -0.14 -2.57 16 23 C -0.13 -2.58 4.95 -26.75 -0.13 -2.72 16 24 H 0.02 0.20 7.88 -51.93 -0.41 -0.21 16 25 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 26 H 0.08 0.77 4.51 -51.93 -0.23 0.54 16 27 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 28 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.41 7.61 -51.93 -0.40 0.01 16 31 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 32 H 0.06 0.82 7.60 -51.93 -0.39 0.42 16 33 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.52 7.94 -51.93 -0.41 0.11 16 36 H 0.06 0.70 5.94 -51.93 -0.31 0.39 16 37 H 0.06 0.74 6.00 -51.93 -0.31 0.43 16 38 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 39 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.34 5.37 6.28 -39.29 -0.25 5.12 16 41 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 2.34 6.08 -51.93 -0.32 2.02 16 49 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 51 H 0.07 1.63 7.20 -51.93 -0.37 1.25 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -26.92 367.98 -9.98 -36.90 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -9.83 Total: 3.00 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 0.25 Total: -19.41 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.93 Total: -42.17 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.92 -9.98 -36.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.649 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds