Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46912 * 110.99812 * 2 1 4 4 C 1.46902 * 111.00139 * 123.95117 * 2 1 3 5 5 C 1.52999 * 109.47345 * 170.00630 * 4 2 1 6 6 C 1.52995 * 109.47393 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46798 * 59.99904 * 6 5 4 8 8 C 1.52995 * 109.47364 * 299.99817 * 6 5 4 9 9 N 1.46897 * 109.47334 * 179.97438 * 6 5 4 10 10 C 1.46905 * 111.00273 * 177.98492 * 9 6 5 11 11 C 1.52998 * 109.46927 * 128.59186 * 10 9 6 12 12 C 1.53003 * 109.46848 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47449 * 300.00291 * 12 11 10 14 14 C 1.50697 * 109.47103 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00269 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99824 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00340 * 359.72168 * 16 14 13 18 18 Si 1.86804 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46725 * 359.97438 * 18 16 14 20 20 H 1.48489 * 109.47332 * 119.99606 * 18 16 14 21 21 H 1.48506 * 109.47011 * 240.00206 * 18 16 14 22 22 C 1.53001 * 109.47006 * 59.99587 * 13 12 11 23 23 C 1.52998 * 109.47582 * 300.00256 * 22 13 12 24 24 H 1.09004 * 109.47695 * 296.04532 * 1 2 3 25 25 H 1.08998 * 109.47310 * 56.05336 * 1 2 3 26 26 H 1.09007 * 109.46719 * 176.04541 * 1 2 3 27 27 H 1.08998 * 109.47020 * 183.95445 * 3 2 1 28 28 H 1.09000 * 109.46801 * 303.95520 * 3 2 1 29 29 H 1.09004 * 109.46785 * 63.95087 * 3 2 1 30 30 H 1.08995 * 109.47016 * 50.00422 * 4 2 1 31 31 H 1.09008 * 109.47096 * 290.00267 * 4 2 1 32 32 H 1.09007 * 109.47322 * 59.99503 * 5 4 2 33 33 H 1.09008 * 109.46727 * 299.99862 * 5 4 2 34 34 H 1.09001 * 109.46958 * 182.63161 * 7 6 5 35 35 H 1.09002 * 109.47561 * 302.62566 * 7 6 5 36 36 H 1.08997 * 109.47888 * 62.63124 * 7 6 5 37 37 H 1.09002 * 109.46711 * 298.25067 * 8 6 5 38 38 H 1.09006 * 109.46934 * 58.24583 * 8 6 5 39 39 H 1.08994 * 109.47345 * 178.24620 * 8 6 5 40 40 H 1.00904 * 110.99987 * 301.94086 * 9 6 5 41 41 H 1.08998 * 109.46498 * 8.59365 * 10 9 6 42 42 H 1.09001 * 109.46921 * 60.00519 * 11 10 9 43 43 H 1.08995 * 109.47371 * 300.00308 * 11 10 9 44 44 H 1.08999 * 109.46779 * 179.97438 * 12 11 10 45 45 H 1.09001 * 109.46834 * 60.00590 * 12 11 10 46 46 H 1.09002 * 109.46825 * 300.00052 * 13 12 11 47 47 H 0.96993 * 120.00778 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.46949 * 60.00541 * 22 13 12 49 49 H 1.08995 * 109.47044 * 179.97438 * 22 13 12 50 50 H 1.08999 * 109.46814 * 300.00449 * 23 22 13 51 51 H 1.08995 * 109.47400 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 6 4.0529 -1.7523 2.1556 7 6 3.3701 -3.1205 2.2096 8 6 3.7750 -0.9921 3.4539 9 7 5.5016 -1.9345 1.9948 10 6 6.0719 -2.6561 3.1404 11 6 6.9045 -3.8365 2.6363 12 6 7.4989 -4.5877 3.8293 13 6 8.3912 -3.6411 4.6348 14 6 8.9762 -4.3809 5.8102 15 1 8.7359 -5.4221 5.9669 16 6 9.8181 -3.7284 6.6856 17 7 10.1151 -2.4619 6.4918 18 14 10.5438 -4.6454 8.1423 19 1 10.0624 -6.0502 8.1324 20 1 12.0257 -4.6289 8.0493 21 1 10.1195 -3.9861 9.4035 22 6 7.5585 -2.4607 5.1388 23 6 6.9641 -1.7095 3.9458 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5738 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3434 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7042 1.8724 0.9233 30 1 1.5090 -1.7406 1.1757 31 1 1.7974 -0.2246 2.0629 32 1 3.9909 0.0196 0.9324 33 1 3.7024 -1.4965 0.0452 34 1 3.7265 -3.6702 3.0807 35 1 2.2909 -2.9855 2.2818 36 1 3.6065 -3.6806 1.3049 37 1 4.2870 -0.0302 3.4283 38 1 2.7021 -0.8300 3.5576 39 1 4.1379 -1.5745 4.3008 40 1 5.7127 -2.4068 1.1285 41 1 5.2661 -3.0246 3.7752 42 1 7.7103 -3.4680 2.0014 43 1 6.2689 -4.5106 2.0621 44 1 8.0918 -5.4289 3.4702 45 1 6.6935 -4.9562 4.4645 46 1 9.1967 -3.2726 3.9995 47 1 10.7070 -2.0027 7.1079 48 1 6.7531 -2.8292 5.7740 49 1 8.1941 -1.7866 5.7129 50 1 7.7696 -1.3411 3.3105 51 1 6.3705 -0.8688 4.3048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -20.658122 kcal Electronic energy + Delta-G solvation = -23633.520820 eV Core-core repulsion = 20566.623996 eV Total energy + Delta-G solvation = -3066.896824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38815 -37.76730 -36.18136 -33.07315 -31.28537 -29.73452 -28.95671 -27.87797 -27.69000 -27.15265 -25.07052 -23.91119 -21.60357 -21.51869 -20.29058 -18.91844 -18.53444 -16.32339 -16.25461 -15.71368 -15.25978 -14.85929 -14.53552 -14.46152 -14.22865 -13.71220 -13.35250 -13.00743 -12.96844 -12.69362 -12.56976 -12.36392 -12.10871 -12.00773 -11.84874 -11.80797 -11.57103 -11.32557 -11.27411 -11.01742 -10.97714 -10.78528 -10.62146 -10.55102 -10.21861 -10.14824 -10.07560 -9.80021 -9.26585 -8.85728 -8.61013 -8.57102 -8.23949 -7.96229 -5.91982 -3.97968 3.32100 3.40229 3.43992 3.69175 4.34437 4.48669 4.82517 4.85464 4.94452 5.04082 5.13072 5.20188 5.25816 5.35767 5.37232 5.44181 5.46036 5.48430 5.57303 5.62510 5.67450 5.71519 5.77253 5.89741 5.95244 5.97877 6.04332 6.13279 6.16296 6.38545 6.41073 6.45374 6.52182 6.55643 6.74879 6.78888 6.79979 6.80777 6.83251 7.01432 7.22771 7.34927 7.52171 7.64503 7.76289 7.83399 8.10449 8.25453 8.54571 9.06620 9.66256 11.13432 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.003065 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.196246 B = 9133.247785 C = 9333.601401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.052 3.948 5 C -0.100 4.100 6 C 0.113 3.887 7 C -0.183 4.183 8 C -0.142 4.142 9 N -0.678 5.678 10 C 0.090 3.910 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.049 3.951 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.110 4.110 23 C -0.099 4.099 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.335 0.665 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.258 0.742 48 H 0.028 0.972 49 H 0.090 0.910 50 H 0.053 0.947 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 4.788 -11.495 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.076 4.076 5 C -0.138 4.138 6 C 0.021 3.979 7 C -0.242 4.242 8 C -0.199 4.199 9 N -0.308 5.308 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.148 4.148 23 C -0.137 4.137 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.801 5.331 -11.603 21.103 hybrid contribution -0.201 -0.993 1.420 1.744 sum -17.002 4.338 -10.184 20.288 Atomic orbital electron populations 1.22371 0.87597 1.02123 1.00324 1.61986 1.07561 1.14059 1.43642 1.22447 1.01462 0.88652 1.00193 1.22330 0.96102 0.98079 0.91090 1.21534 0.93575 1.01022 0.97698 1.20866 0.88089 0.93614 0.95309 1.22657 1.00992 0.98418 1.02101 1.21981 1.00335 1.00996 0.96633 1.60790 1.09855 1.54882 1.05252 1.21667 0.96005 0.92863 0.91349 1.21966 0.99015 0.96537 0.99003 1.21576 0.98959 0.98480 0.95255 1.18647 0.92620 0.91670 0.94003 1.21282 1.27213 0.96742 1.09742 0.92914 1.24966 0.96396 0.94884 0.97800 1.69892 1.36299 1.09398 1.37261 0.86623 0.78924 0.80063 0.82892 1.19915 1.21121 1.21136 1.21617 0.98153 0.99571 0.95470 1.21624 0.97629 0.96978 0.97504 0.95802 0.91499 0.91475 0.90746 0.91685 0.95706 0.90697 0.94361 0.91088 0.91458 0.92108 0.92455 0.92791 0.91926 0.92935 0.92053 0.84666 0.92588 0.92128 0.94122 0.93606 0.93703 0.95743 0.93206 0.95301 0.89130 0.92815 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 60.06 0.57 0.76 16 2 N -0.55 -5.21 5.02 -251.25 -1.26 -6.47 16 3 C 0.02 0.18 9.32 60.07 0.56 0.74 16 4 C 0.05 0.50 4.26 -3.82 -0.02 0.49 16 5 C -0.10 -1.07 4.47 -26.73 -0.12 -1.19 16 6 C 0.11 1.36 0.72 -131.61 -0.09 1.26 16 7 C -0.18 -2.08 8.03 37.16 0.30 -1.78 16 8 C -0.14 -1.78 7.31 37.15 0.27 -1.51 16 9 N -0.68 -9.56 6.01 -93.05 -0.56 -10.12 16 10 C 0.09 1.50 1.45 -67.71 -0.10 1.40 16 11 C -0.13 -2.20 5.02 -26.73 -0.13 -2.33 16 12 C -0.10 -2.17 5.14 -26.73 -0.14 -2.31 16 13 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.62 11.33 55.43 0.63 -24.99 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.11 -2.59 4.98 -26.73 -0.13 -2.72 16 23 C -0.10 -1.95 5.41 -26.73 -0.14 -2.09 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.07 0.48 8.12 -51.92 -0.42 0.06 16 27 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 28 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 31 H 0.04 0.38 6.37 -51.92 -0.33 0.05 16 32 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 35 H 0.06 0.58 6.29 -51.93 -0.33 0.25 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 39 H 0.06 0.87 6.35 -51.93 -0.33 0.54 16 40 H 0.34 4.46 8.10 -39.29 -0.32 4.14 16 41 H 0.06 0.96 4.75 -51.93 -0.25 0.71 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.09 2.42 6.08 -51.93 -0.32 2.11 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.04 0.80 7.36 -51.93 -0.38 0.42 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -28.05 370.35 -10.18 -38.23 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -9.79 Total: 2.44 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 0.25 Total: -21.13 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -1.19 Total: -41.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.05 -10.18 -38.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.574 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds