Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53002 * 109.47377 * 2 1 4 4 N 1.46901 * 109.47312 * 120.00310 * 2 1 3 5 5 C 1.46897 * 111.00215 * 153.09680 * 4 2 1 6 6 C 1.52997 * 109.47049 * 274.84083 * 5 4 2 7 7 C 1.53003 * 109.47612 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.46765 * 300.00434 * 7 6 5 9 9 C 1.50704 * 109.47076 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99943 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00162 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99745 * 359.72487 * 11 9 8 13 13 Si 1.86792 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46888 * 60.00132 * 13 11 9 15 15 H 1.48493 * 109.47447 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47342 * 300.00188 * 13 11 9 17 17 C 1.52997 * 109.47409 * 59.99442 * 8 7 6 18 18 C 1.52995 * 109.47189 * 299.99982 * 17 8 7 19 19 C 1.46902 * 110.99809 * 277.05033 * 4 2 1 20 20 C 1.53005 * 109.46991 * 166.42365 * 19 4 2 21 21 C 1.52998 * 109.46961 * 286.42137 * 19 4 2 22 22 C 1.52997 * 109.47145 * 46.42468 * 19 4 2 23 23 N 1.46897 * 109.47357 * 62.59144 * 22 19 4 24 24 H 1.09002 * 109.47237 * 309.28112 * 1 2 3 25 25 H 1.09006 * 109.47274 * 69.28122 * 1 2 3 26 26 H 1.09004 * 109.47450 * 189.27627 * 1 2 3 27 27 H 1.08998 * 109.47182 * 240.00139 * 2 1 3 28 28 H 1.09000 * 109.46988 * 183.95936 * 3 2 1 29 29 H 1.08998 * 109.47291 * 303.96438 * 3 2 1 30 30 H 1.09001 * 109.46507 * 63.96532 * 3 2 1 31 31 H 1.09003 * 109.46895 * 154.84710 * 5 4 2 32 32 H 1.08998 * 109.47357 * 60.00140 * 6 5 4 33 33 H 1.09008 * 109.47603 * 300.00291 * 6 5 4 34 34 H 1.08994 * 109.47740 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46768 * 59.99629 * 7 6 5 36 36 H 1.09003 * 109.47449 * 299.99509 * 8 7 6 37 37 H 0.96996 * 120.00073 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.46917 * 60.00176 * 17 8 7 39 39 H 1.09004 * 109.47324 * 179.97438 * 17 8 7 40 40 H 1.09003 * 109.47350 * 299.99929 * 18 17 8 41 41 H 1.09001 * 109.47236 * 179.97438 * 18 17 8 42 42 H 1.08994 * 109.46932 * 65.20702 * 20 19 4 43 43 H 1.09004 * 109.46761 * 185.20387 * 20 19 4 44 44 H 1.09004 * 109.46676 * 305.19949 * 20 19 4 45 45 H 1.09000 * 109.46841 * 71.29950 * 21 19 4 46 46 H 1.09002 * 109.47024 * 191.29169 * 21 19 4 47 47 H 1.08995 * 109.47057 * 311.29086 * 21 19 4 48 48 H 1.09002 * 109.47391 * 182.59679 * 22 19 4 49 49 H 1.08997 * 109.47220 * 302.59220 * 22 19 4 50 50 H 1.00902 * 111.00379 * 56.04829 * 23 22 19 51 51 H 1.00903 * 111.00109 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3481 -1.2743 0.9659 6 6 3.1949 -2.6517 0.3178 7 6 4.5786 -3.2580 0.0751 8 6 5.3802 -2.3437 -0.8535 9 6 6.7433 -2.9405 -1.0920 10 1 7.0112 -3.8779 -0.6275 11 6 7.6485 -2.2897 -1.9034 12 7 7.3203 -1.1508 -2.4734 13 14 9.3383 -3.0291 -2.1985 14 1 9.1905 -4.3666 -2.8266 15 1 10.1159 -2.1424 -3.1008 16 1 10.0516 -3.1665 -0.9034 17 6 5.5334 -0.9662 -0.2053 18 6 4.1498 -0.3601 0.0373 19 6 2.0364 0.2099 2.3584 20 6 2.2199 -0.6075 3.6387 21 6 3.1930 1.2013 2.2161 22 6 0.7137 0.9758 2.4276 23 7 -0.3910 0.0283 2.6264 24 1 -0.3634 0.6506 0.7955 25 1 -0.3634 0.3636 -0.9612 26 1 -0.3634 -1.0142 0.1657 27 1 1.8932 -0.5138 -0.8900 28 1 3.1276 1.4432 -0.0710 29 1 1.6198 1.9765 -0.8523 30 1 1.7358 1.9353 0.9234 31 1 3.8722 -1.3762 1.9162 32 1 2.6708 -2.5499 -0.6325 33 1 2.6242 -3.3033 0.9795 34 1 4.4695 -4.2391 -0.3871 35 1 5.1024 -3.3598 1.0255 36 1 4.8565 -2.2417 -1.8040 37 1 7.9572 -0.6928 -3.0439 38 1 6.0572 -1.0682 0.7452 39 1 6.1049 -0.3150 -0.8667 40 1 3.6260 -0.2581 -0.9132 41 1 4.2589 0.6211 0.4995 42 1 3.2023 -1.0796 3.6306 43 1 2.1400 0.0502 4.5042 44 1 1.4481 -1.3753 3.6932 45 1 2.9649 1.9143 1.4239 46 1 3.3319 1.7350 3.1563 47 1 4.1061 0.6608 1.9668 48 1 0.7439 1.6787 3.2602 49 1 0.5609 1.5218 1.4967 50 1 -0.2402 -0.5355 3.4495 51 1 -1.2763 0.5100 2.6751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = 78.011815 kcal Electronic energy + Delta-G solvation = -25496.215430 eV Core-core repulsion = 22433.597256 eV Total energy + Delta-G solvation = -3062.618174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11008 -37.02986 -34.19367 -33.10008 -32.33222 -30.61893 -29.80758 -28.28945 -27.16143 -25.76870 -24.93668 -23.93643 -21.42862 -21.21499 -20.36162 -18.67501 -18.22559 -16.41216 -16.21422 -15.98773 -15.45585 -14.59592 -14.23309 -13.92969 -13.64785 -13.48475 -13.24604 -12.94425 -12.83373 -12.53225 -12.16649 -12.15265 -12.00175 -11.82500 -11.53056 -11.31410 -11.23956 -11.02277 -10.88661 -10.77323 -10.63110 -10.57459 -10.28343 -10.14141 -10.01290 -9.91979 -9.75051 -9.29672 -9.05614 -8.85262 -8.52720 -8.45699 -8.22703 -7.62746 -5.91223 -3.96907 3.35091 3.39554 3.42517 4.16705 4.49171 4.64554 4.86021 5.08308 5.20678 5.34901 5.37189 5.43238 5.47054 5.54972 5.65789 5.69241 5.74165 5.83822 5.85390 5.93469 5.99728 6.05662 6.10983 6.18117 6.20424 6.27920 6.33397 6.37106 6.46050 6.49254 6.52635 6.59186 6.64000 6.82288 6.85173 6.88103 6.94082 7.07588 7.18012 7.24133 7.33821 7.47219 7.58022 7.75324 7.78488 7.82535 8.11907 8.24169 8.56207 9.07327 9.67119 11.14004 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029929 B = 0.004599 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.322099 B = 6087.466414 C = 6182.589517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 C -0.231 4.231 4 N -0.502 5.502 5 C 0.086 3.914 6 C -0.097 4.097 7 C -0.108 4.108 8 C 0.050 3.950 9 C -0.511 4.511 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.107 4.107 18 C -0.163 4.163 19 C 0.117 3.883 20 C -0.140 4.140 21 C -0.242 4.242 22 C 0.044 3.956 23 N -0.828 5.828 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.022 0.978 37 H 0.258 0.742 38 H 0.028 0.972 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.043 0.957 47 H 0.084 0.916 48 H 0.018 0.982 49 H 0.105 0.895 50 H 0.335 0.665 51 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 6.267 9.961 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 C -0.288 4.288 4 N -0.224 5.224 5 C -0.022 4.022 6 C -0.135 4.135 7 C -0.147 4.147 8 C 0.032 3.968 9 C -0.550 4.550 10 H 0.070 0.930 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.145 4.145 18 C -0.201 4.201 19 C 0.026 3.974 20 C -0.197 4.197 21 C -0.300 4.300 22 C -0.086 4.086 23 N -0.358 5.358 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.036 0.964 49 H 0.122 0.878 50 H 0.150 0.850 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.868 5.693 9.254 17.617 hybrid contribution 1.542 0.780 0.539 1.810 sum -12.326 6.473 9.793 17.022 Atomic orbital electron populations 1.22361 0.94382 1.03663 0.99932 1.21571 0.95614 0.91932 0.93520 1.24057 1.03743 0.99016 1.01949 1.62455 1.24925 1.32304 1.02740 1.21777 0.87339 0.94789 0.98286 1.21468 0.97752 0.94860 0.99441 1.21627 0.94165 0.98959 0.99908 1.18623 0.94019 0.90903 0.93262 1.21240 0.98899 1.06584 1.28230 0.92993 1.24953 0.98248 0.94991 0.95772 1.69873 1.35266 1.15906 1.32016 0.86742 0.84623 0.79094 0.78014 1.20379 1.21413 1.20420 1.21575 0.93131 1.00310 0.99511 1.23002 0.99293 0.98429 0.99334 1.20885 0.92904 0.91465 0.92105 1.21869 1.02528 0.99936 0.95409 1.24127 1.00893 1.01835 1.03168 1.22646 0.91100 0.93672 1.01179 1.59007 1.03626 1.26578 1.46629 0.89839 0.95165 0.91916 0.90434 0.89730 0.93506 0.89622 0.91270 0.93004 0.93286 0.93632 0.93757 0.95960 0.93180 0.95284 0.89376 0.92200 0.91719 0.92360 0.93412 0.91556 0.88109 0.93764 0.89784 0.96416 0.87764 0.85035 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.05 37.15 0.30 -1.55 16 2 C 0.08 1.16 2.29 -67.72 -0.16 1.01 16 3 C -0.23 -2.98 6.31 37.16 0.23 -2.75 16 4 N -0.50 -7.20 4.04 -203.28 -0.82 -8.02 16 5 C 0.09 1.45 1.46 -67.72 -0.10 1.35 16 6 C -0.10 -1.79 5.41 -26.73 -0.14 -1.93 16 7 C -0.11 -2.31 5.14 -26.73 -0.14 -2.45 16 8 C 0.05 1.26 2.10 -91.77 -0.19 1.06 16 9 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 12 N -0.89 -25.62 11.33 55.43 0.63 -24.99 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C -0.11 -2.48 4.98 -26.74 -0.13 -2.62 16 18 C -0.16 -3.04 2.93 -26.74 -0.08 -3.12 16 19 C 0.12 1.44 0.43 -131.60 -0.06 1.38 16 20 C -0.14 -1.65 7.84 37.16 0.29 -1.36 16 21 C -0.24 -3.10 6.64 37.16 0.25 -2.85 16 22 C 0.04 0.46 4.37 -3.83 -0.02 0.44 16 23 N -0.83 -7.81 7.02 -10.37 -0.07 -7.88 16 24 H 0.08 0.94 3.31 -51.93 -0.17 0.77 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.29 5.70 -51.93 -0.30 0.99 16 28 H 0.08 1.23 3.60 -51.93 -0.19 1.04 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.98 2.76 -51.93 -0.14 0.84 16 31 H 0.07 1.21 5.63 -51.93 -0.29 0.92 16 32 H 0.05 0.99 7.46 -51.93 -0.39 0.60 16 33 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 40 H 0.06 1.18 5.63 -51.93 -0.29 0.89 16 41 H 0.06 1.12 3.26 -51.93 -0.17 0.95 16 42 H 0.06 0.76 6.59 -51.93 -0.34 0.42 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.78 6.82 -51.93 -0.35 0.42 16 45 H 0.10 1.24 3.34 -57.20 -0.19 1.05 16 46 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.08 1.26 4.42 -51.93 -0.23 1.03 16 48 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.10 1.11 2.98 -51.93 -0.15 0.96 16 50 H 0.34 3.06 7.07 -39.29 -0.28 2.78 16 51 H 0.33 2.48 8.99 -39.29 -0.35 2.13 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -27.83 334.27 -8.93 -36.76 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.35 Total: 8.86 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -0.33 Total: -26.28 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.27 Total: -40.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.83 -8.93 -36.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.769 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds