Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.46818 * 2 1 4 4 C 1.46903 * 111.00045 * 66.04584 * 3 2 1 5 5 C 1.52998 * 109.47054 * 199.48146 * 4 3 2 6 6 C 1.46904 * 111.00053 * 189.99903 * 3 2 1 7 7 C 1.52995 * 109.47360 * 75.61854 * 6 3 2 8 8 N 1.46895 * 109.47109 * 174.55469 * 7 6 3 9 9 C 1.46893 * 111.00221 * 66.05046 * 8 7 6 10 10 C 1.46907 * 110.99709 * 190.00380 * 8 7 6 11 11 C 1.53001 * 109.47081 * 294.99915 * 10 8 7 12 12 C 1.53001 * 109.47047 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47259 * 59.99627 * 12 11 10 14 14 C 1.50701 * 109.47170 * 60.00386 * 13 12 11 15 15 H 1.08003 * 119.99785 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00318 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99948 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00296 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47106 * 90.00124 * 18 16 14 20 20 H 1.48498 * 109.47052 * 210.00317 * 18 16 14 21 21 H 1.48504 * 109.46847 * 330.00384 * 18 16 14 22 22 C 1.53001 * 109.47395 * 300.00160 * 13 12 11 23 23 C 1.52997 * 109.46974 * 60.00231 * 22 13 12 24 24 H 1.09005 * 109.47000 * 60.00283 * 1 2 3 25 25 H 1.09000 * 109.47278 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47476 * 300.00112 * 1 2 3 27 27 H 1.08994 * 109.47476 * 239.99887 * 2 1 3 28 28 H 1.08996 * 109.46851 * 119.99505 * 2 1 3 29 29 H 1.09000 * 109.47177 * 319.47886 * 4 3 2 30 30 H 1.08996 * 109.47402 * 79.47835 * 4 3 2 31 31 H 1.09000 * 109.47087 * 174.86607 * 5 4 3 32 32 H 1.08998 * 109.47283 * 294.86509 * 5 4 3 33 33 H 1.09000 * 109.47754 * 54.86193 * 5 4 3 34 34 H 1.09004 * 109.46637 * 315.61882 * 6 3 2 35 35 H 1.09006 * 109.47222 * 195.62420 * 6 3 2 36 36 H 1.09003 * 109.46884 * 54.55693 * 7 6 3 37 37 H 1.08994 * 109.47218 * 294.55976 * 7 6 3 38 38 H 1.09000 * 109.47751 * 183.95391 * 9 8 7 39 39 H 1.09004 * 109.47024 * 303.95435 * 9 8 7 40 40 H 1.08998 * 109.47224 * 63.94812 * 9 8 7 41 41 H 1.08991 * 109.47461 * 55.00264 * 10 8 7 42 42 H 1.08993 * 109.46847 * 60.00228 * 11 10 8 43 43 H 1.09001 * 109.46742 * 299.99906 * 11 10 8 44 44 H 1.09001 * 109.46540 * 299.99776 * 12 11 10 45 45 H 1.08993 * 109.47036 * 180.02562 * 12 11 10 46 46 H 1.08997 * 109.47029 * 179.97438 * 13 12 11 47 47 H 0.97002 * 120.00370 * 179.97438 * 17 16 14 48 48 H 1.08993 * 109.46847 * 180.02562 * 22 13 12 49 49 H 1.09001 * 109.46734 * 299.99831 * 22 13 12 50 50 H 1.09001 * 109.47461 * 59.99715 * 23 22 13 51 51 H 1.09005 * 109.47254 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0670 1.2533 5 6 1.7439 3.5813 1.0477 6 6 3.4684 1.4313 -0.2381 7 6 3.7505 1.1707 -1.7191 8 7 5.1851 1.3452 -1.9824 9 6 5.9761 0.3191 -1.2903 10 6 5.4601 1.3376 -3.4255 11 6 5.1265 -0.0403 -4.0010 12 6 5.4135 -0.0484 -5.5038 13 6 6.8932 0.2592 -5.7421 14 6 7.7394 -0.7869 -5.0634 15 1 7.2689 -1.5906 -4.5165 16 6 9.1142 -0.7181 -5.1408 17 7 9.6872 0.2608 -5.8064 18 14 10.1632 -2.0145 -4.2989 19 1 10.4146 -3.1354 -5.2400 20 1 11.4574 -1.4135 -3.8878 21 1 9.4513 -2.5251 -3.0998 22 6 7.2268 1.6371 -5.1666 23 6 6.9399 1.6452 -3.6638 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 0.6581 1.7893 1.5481 30 1 2.3700 1.7719 2.0350 31 1 1.3972 4.0876 1.9486 32 1 2.7746 3.8703 0.8424 33 1 1.1125 3.8650 0.2057 34 1 3.9603 0.6682 0.3652 35 1 3.8507 2.4143 0.0371 36 1 3.1813 1.8743 -2.3266 37 1 3.4561 0.1520 -1.9713 38 1 7.0375 0.5129 -1.4448 39 1 5.7531 0.3466 -0.2237 40 1 5.7244 -0.6638 -1.6888 41 1 4.8479 2.0942 -3.9161 42 1 4.0725 -0.2595 -3.8309 43 1 5.7389 -0.7968 -3.5103 44 1 4.8015 0.7083 -5.9946 45 1 5.1754 -1.0298 -5.9138 46 1 7.0978 0.2529 -6.8127 47 1 10.6545 0.3094 -5.8605 48 1 8.2808 1.8563 -5.3368 49 1 6.6148 2.3937 -5.6576 50 1 7.5519 0.8885 -3.1729 51 1 7.1771 2.6269 -3.2539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -9.750769 kcal Electronic energy + Delta-G solvation = -23966.193420 eV Core-core repulsion = 20899.769575 eV Total energy + Delta-G solvation = -3066.423846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.13876 -38.02904 -35.41703 -32.23269 -31.95621 -30.82029 -29.59294 -28.40082 -27.36207 -25.36161 -24.38575 -23.20434 -22.24469 -21.25281 -20.29114 -19.64792 -18.43633 -16.16258 -15.94684 -15.61849 -15.06204 -14.95032 -14.67104 -14.33732 -14.24881 -13.81520 -13.47509 -13.21675 -12.98621 -12.64063 -12.42176 -12.15523 -12.10217 -11.74165 -11.59499 -11.55217 -11.39794 -11.33844 -11.26348 -11.02286 -10.90544 -10.82661 -10.64074 -10.55315 -10.51816 -10.14453 -9.97510 -9.48885 -9.18950 -8.83980 -8.59469 -8.42667 -8.22993 -7.70206 -5.93027 -3.97189 3.30884 3.38473 3.40323 3.66320 4.46594 4.51826 4.77994 4.92315 5.01549 5.08941 5.21499 5.30082 5.36180 5.37417 5.47043 5.53596 5.56205 5.62036 5.71562 5.77395 5.82739 5.85074 5.87359 5.92353 6.02119 6.05551 6.12070 6.15821 6.18153 6.32273 6.43143 6.55097 6.58096 6.68271 6.78571 6.83615 6.91064 7.00109 7.00788 7.13555 7.21237 7.45030 7.58071 7.61825 7.70248 7.79975 8.00792 8.22346 8.53640 9.04960 9.65616 11.12857 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.003760 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.253196 B = 7445.204568 C = 7540.808354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.539 5.539 4 C 0.048 3.952 5 C -0.147 4.147 6 C 0.058 3.942 7 C 0.062 3.938 8 N -0.537 5.537 9 C 0.019 3.981 10 C 0.093 3.907 11 C -0.136 4.136 12 C -0.102 4.102 13 C 0.044 3.956 14 C -0.499 4.499 15 H 0.052 0.948 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.107 4.107 23 C -0.091 4.091 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.023 0.977 47 H 0.258 0.742 48 H 0.091 0.909 49 H 0.013 0.987 50 H 0.071 0.929 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.738 2.781 12.384 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.264 5.264 4 C -0.080 4.080 5 C -0.204 4.204 6 C -0.070 4.070 7 C -0.067 4.067 8 N -0.260 5.260 9 C -0.130 4.130 10 C -0.014 4.014 11 C -0.175 4.175 12 C -0.141 4.141 13 C 0.025 3.975 14 C -0.537 4.537 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.710 3.290 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.145 4.145 23 C -0.129 4.129 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.032 0.968 50 H 0.090 0.910 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.649 3.563 12.160 19.369 hybrid contribution 0.823 -2.042 0.812 2.346 sum -13.826 1.522 12.972 19.020 Atomic orbital electron populations 1.21820 0.95040 1.01375 1.02351 1.22119 0.95911 0.89169 1.00821 1.61964 1.14463 1.15485 1.34517 1.22117 1.00573 0.95160 0.90141 1.21772 1.02426 0.94657 1.01594 1.22149 0.86348 1.01774 0.96685 1.21974 0.89500 0.99789 0.95418 1.62265 1.05034 1.47677 1.11022 1.22455 0.99609 0.93478 0.97410 1.21746 0.98651 0.96108 0.84922 1.22052 0.98331 0.98801 0.98326 1.21489 0.99592 0.98930 0.94052 1.18687 0.89225 0.93264 0.96302 1.21118 0.90758 1.09548 1.32291 0.92982 1.24917 0.97999 0.95438 0.95520 1.69866 1.09826 1.31201 1.42060 0.86762 0.80157 0.82149 0.79940 1.20889 1.21315 1.20084 1.21504 1.02883 0.97298 0.92851 1.21420 0.93085 0.99791 0.98580 0.91779 0.92468 0.92804 0.90567 0.95248 0.90813 0.95059 0.92691 0.92538 0.91818 0.94907 0.89989 0.90520 0.95142 0.90625 0.92804 0.95188 0.91527 0.94804 0.90933 0.94897 0.93879 0.95905 0.93181 0.89044 0.96797 0.91002 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.88 37.16 0.37 -0.90 16 2 C 0.05 0.49 5.51 -3.82 -0.02 0.47 16 3 N -0.54 -5.97 4.37 -234.63 -1.02 -6.99 16 4 C 0.05 0.45 5.55 -3.82 -0.02 0.43 16 5 C -0.15 -1.31 9.95 37.16 0.37 -0.94 16 6 C 0.06 0.72 4.60 -3.82 -0.02 0.70 16 7 C 0.06 0.88 4.42 -3.83 -0.02 0.86 16 8 N -0.54 -8.77 4.75 -234.89 -1.12 -9.89 16 9 C 0.02 0.30 8.62 60.06 0.52 0.82 16 10 C 0.09 1.73 2.23 -67.70 -0.15 1.58 16 11 C -0.14 -2.61 4.29 -26.73 -0.11 -2.73 16 12 C -0.10 -2.15 5.41 -26.73 -0.14 -2.29 16 13 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 14 C -0.50 -13.19 6.61 -34.44 -0.23 -13.42 16 15 H 0.05 1.38 6.71 -52.48 -0.35 1.03 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 18 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 C -0.11 -2.50 5.24 -26.73 -0.14 -2.64 16 23 C -0.09 -1.92 4.78 -26.73 -0.13 -2.04 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 6.25 -51.93 -0.32 0.10 16 27 H 0.08 0.84 6.71 -51.93 -0.35 0.50 16 28 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 29 H 0.07 0.62 5.88 -51.93 -0.31 0.32 16 30 H 0.03 0.30 8.00 -51.93 -0.42 -0.12 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.41 6.59 -51.93 -0.34 0.07 16 35 H 0.08 1.04 6.55 -51.93 -0.34 0.70 16 36 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 37 H 0.03 0.45 5.75 -51.93 -0.30 0.15 16 38 H 0.08 1.32 6.33 -51.93 -0.33 1.00 16 39 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 40 H 0.03 0.50 6.28 -51.93 -0.33 0.18 16 41 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 42 H 0.03 0.59 6.75 -51.93 -0.35 0.24 16 43 H 0.07 1.52 4.86 -51.93 -0.25 1.27 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 1.65 5.50 -51.93 -0.29 1.37 16 51 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -26.82 363.54 -10.59 -37.41 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -9.47 Total: 0.10 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.06 Total: -17.69 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -1.51 Total: -41.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.82 -10.59 -37.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.657 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds