Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 120.00024 * 2 1 4 4 N 1.34780 * 120.00022 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99814 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46716 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47019 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47329 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47200 * 180.02562 * 8 7 6 10 10 C 1.46903 * 111.00418 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47667 * 205.00504 * 10 9 8 12 12 C 1.52997 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47296 * 59.99748 * 12 11 10 14 14 C 1.50700 * 109.47257 * 59.99902 * 13 12 11 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.53003 * 109.47195 * 299.99941 * 13 12 11 23 23 C 1.52994 * 109.46903 * 84.99606 * 10 9 8 24 24 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46801 * 299.99380 * 1 2 3 26 26 H 1.08992 * 109.47344 * 59.99307 * 1 2 3 27 27 H 0.96994 * 120.00213 * 359.97438 * 4 2 1 28 28 H 1.08995 * 109.47250 * 59.99927 * 5 4 2 29 29 H 1.08996 * 109.46819 * 299.99744 * 5 4 2 30 30 H 1.09003 * 109.47106 * 60.00404 * 6 5 4 31 31 H 1.08996 * 109.47461 * 299.99588 * 6 5 4 32 32 H 1.09009 * 109.46911 * 59.99952 * 7 6 5 33 33 H 1.09002 * 109.47057 * 300.00552 * 7 6 5 34 34 H 1.08995 * 109.46990 * 60.00195 * 8 7 6 35 35 H 1.09002 * 109.47484 * 300.00269 * 8 7 6 36 36 H 1.00896 * 111.00418 * 303.95553 * 9 8 7 37 37 H 1.09005 * 109.46638 * 325.00521 * 10 9 8 38 38 H 1.08998 * 109.46987 * 59.99359 * 11 10 9 39 39 H 1.09005 * 109.46648 * 300.00005 * 11 10 9 40 40 H 1.08996 * 109.46678 * 299.99615 * 12 11 10 41 41 H 1.09004 * 109.46869 * 179.97438 * 12 11 10 42 42 H 1.08997 * 109.47279 * 180.02562 * 13 12 11 43 43 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.47453 * 180.02562 * 22 13 12 45 45 H 1.08996 * 109.47248 * 300.00419 * 22 13 12 46 46 H 1.08999 * 109.47824 * 300.01002 * 23 10 9 47 47 H 1.09005 * 109.46726 * 60.00969 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 6 5.6859 -2.6097 -0.0022 8 6 6.1959 -4.0522 -0.0027 9 7 7.6649 -4.0522 -0.0033 10 6 8.1914 -5.4236 -0.0032 11 6 9.5949 -5.4311 0.6060 12 6 10.1434 -6.8594 0.6055 13 6 10.2084 -7.3802 -0.8316 14 6 11.1145 -6.4938 -1.6467 15 1 11.5955 -5.6437 -1.1859 16 6 11.3286 -6.7675 -2.9811 17 7 10.7463 -7.8053 -3.5411 18 14 12.4522 -5.6692 -3.9912 19 1 12.9848 -4.5816 -3.1316 20 1 13.5793 -6.4738 -4.5276 21 1 11.6854 -5.0788 -5.1176 22 6 8.8049 -7.3728 -1.4408 23 6 8.2562 -5.9450 -1.4401 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8898 27 1 1.6959 -2.0072 -0.0005 28 1 4.0096 -0.6535 0.8888 29 1 4.0088 -0.6532 -0.8911 30 1 3.7922 -3.1237 -0.8908 31 1 3.7930 -3.1233 0.8893 32 1 6.0499 -2.0955 0.8874 33 1 6.0485 -2.0961 -0.8926 34 1 5.8319 -4.5659 -0.8924 35 1 5.8333 -4.5662 0.8875 36 1 8.0262 -3.5259 -0.7846 37 1 7.5359 -6.0644 0.5866 38 1 9.5486 -5.0596 1.6296 39 1 10.2504 -4.7903 0.0161 40 1 9.4881 -7.5004 1.1950 41 1 11.1435 -6.8646 1.0391 42 1 10.5988 -8.3979 -0.8319 43 1 10.8966 -7.9976 -4.4799 44 1 8.8511 -7.7443 -2.4645 45 1 8.1496 -8.0138 -0.8512 46 1 7.2564 -5.9397 -1.8741 47 1 8.9117 -5.3043 -2.0299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -77.439206 kcal Electronic energy + Delta-G solvation = -22048.871522 eV Core-core repulsion = 18843.679391 eV Total energy + Delta-G solvation = -3205.192131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86009 -38.31933 -36.51566 -34.98364 -33.09614 -31.85280 -30.38991 -29.50521 -28.52817 -26.31027 -24.55248 -22.61843 -21.65950 -21.36154 -20.77410 -20.38530 -18.68904 -17.08939 -16.45117 -16.29688 -15.85539 -15.35804 -15.00145 -14.62405 -14.45058 -13.99042 -13.86399 -13.33784 -13.12994 -13.06449 -12.67803 -12.66022 -12.32892 -12.21572 -11.94995 -11.59809 -11.40530 -11.31939 -11.01303 -10.91664 -10.83780 -10.75332 -10.52050 -10.30500 -10.19681 -10.05249 -9.64879 -9.41206 -9.14532 -8.96940 -8.66196 -8.29276 -7.81814 -5.95295 -3.99149 2.32349 2.90061 3.29293 3.38314 3.42037 4.36906 4.45268 4.45868 4.68468 4.71684 4.82341 5.00294 5.09600 5.23501 5.35172 5.35282 5.40891 5.50624 5.61391 5.65305 5.70794 5.80479 5.86929 6.06745 6.09375 6.16370 6.19170 6.35280 6.47698 6.50826 6.55859 6.78100 6.80131 6.90695 7.13564 7.15651 7.21475 7.34762 7.51384 7.62533 7.75966 7.82359 7.89254 7.96849 8.17630 8.51740 9.03997 9.63916 11.10614 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002579 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.906162 B =10855.858004 C =11307.237391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.549 6.549 4 N -0.731 5.731 5 C 0.116 3.884 6 C -0.129 4.129 7 C -0.114 4.114 8 C 0.060 3.940 9 N -0.691 5.691 10 C 0.094 3.906 11 C -0.092 4.092 12 C -0.107 4.107 13 C 0.042 3.958 14 C -0.497 4.497 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.883 3.117 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.104 4.104 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.401 0.599 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.339 0.661 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.023 0.977 43 H 0.257 0.743 44 H 0.089 0.911 45 H 0.012 0.988 46 H 0.027 0.973 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.352 8.792 6.810 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.427 6.427 4 N -0.384 5.384 5 C -0.007 4.007 6 C -0.167 4.167 7 C -0.153 4.153 8 C -0.069 4.069 9 N -0.320 5.320 10 C -0.015 4.015 11 C -0.130 4.130 12 C -0.146 4.146 13 C 0.024 3.976 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.143 4.143 23 C -0.165 4.165 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.235 0.765 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.867 9.543 7.336 21.543 hybrid contribution 0.137 -0.218 -1.674 1.694 sum -17.729 9.325 5.662 20.817 Atomic orbital electron populations 1.21849 0.91712 1.04195 1.05321 1.20844 0.90658 0.83531 0.75590 1.90739 1.70827 1.31468 1.49661 1.46198 1.07839 1.08753 1.75577 1.21422 0.79131 0.97573 1.02613 1.21754 0.96931 0.95259 1.02773 1.21472 0.93156 0.97601 1.03049 1.21900 0.89232 0.95584 1.00223 1.60690 1.05973 1.15476 1.49872 1.21576 0.96287 0.87075 0.96576 1.21343 0.95039 0.97966 0.98649 1.21561 0.98439 0.95083 0.99478 1.18701 0.92910 0.96378 0.89636 1.21208 1.26421 1.11643 0.94278 0.92577 1.24957 0.95966 0.95231 0.98006 1.69888 1.43805 1.27404 1.12096 0.86670 0.80900 0.80883 0.80370 1.19801 1.21195 1.21254 1.21442 0.96574 0.92968 1.03282 1.22005 0.98255 1.00413 0.95794 0.90585 0.88757 0.88754 0.76473 0.91327 0.91390 0.91318 0.91196 0.90834 0.91772 0.95424 0.91568 0.84326 0.92222 0.94006 0.91301 0.94988 0.93474 0.95870 0.93302 0.89279 0.96945 0.95472 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.39 36.00 0.37 -0.45 16 2 C 0.51 4.68 7.94 -10.99 -0.09 4.59 16 3 O -0.55 -7.82 17.10 5.56 0.10 -7.72 16 4 N -0.73 -5.41 5.56 -60.29 -0.33 -5.75 16 5 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 6 C -0.13 -1.00 5.33 -26.73 -0.14 -1.14 16 7 C -0.11 -1.14 5.47 -26.73 -0.15 -1.28 16 8 C 0.06 0.75 5.48 -3.83 -0.02 0.73 16 9 N -0.69 -10.51 6.25 -106.73 -0.67 -11.18 16 10 C 0.09 1.67 2.47 -67.71 -0.17 1.50 16 11 C -0.09 -1.75 5.30 -26.73 -0.14 -1.90 16 12 C -0.11 -2.22 5.41 -26.74 -0.14 -2.37 16 13 C 0.04 1.02 2.58 -91.77 -0.24 0.79 16 14 C -0.50 -13.08 6.61 -34.44 -0.23 -13.31 16 15 H 0.06 1.48 6.71 -52.49 -0.35 1.13 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 17 N -0.89 -25.09 11.33 55.43 0.63 -24.46 16 18 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.10 -2.40 5.23 -26.75 -0.14 -2.54 16 23 C -0.13 -2.54 4.95 -26.76 -0.13 -2.68 16 24 H 0.08 0.18 7.91 -51.93 -0.41 -0.23 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.40 1.77 8.31 -40.82 -0.34 1.44 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 35 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 36 H 0.34 5.19 8.47 -39.29 -0.33 4.85 16 37 H 0.06 1.05 7.80 -51.93 -0.40 0.65 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 47 H 0.07 1.62 7.20 -51.93 -0.37 1.24 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -30.67 365.45 -9.82 -40.49 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.70 Total: 2.66 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.33 Total: -15.57 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.37 Total: -41.38 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.10 Total: -7.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.67 -9.82 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.949 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds