Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47314 * 2 1 4 4 C 1.46896 * 111.00088 * 291.81895 * 3 2 1 5 5 C 1.53002 * 109.47245 * 290.73171 * 4 3 2 6 6 C 1.53004 * 109.47151 * 185.10879 * 5 4 3 7 7 N 1.46904 * 109.46786 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99225 * 170.00227 * 7 6 5 9 9 C 1.46888 * 111.00222 * 293.95583 * 7 6 5 10 10 C 1.46900 * 110.99882 * 55.77046 * 3 2 1 11 11 C 1.53004 * 109.46582 * 56.04638 * 10 3 2 12 12 C 1.53003 * 109.46771 * 179.97438 * 11 10 3 13 13 C 1.53001 * 109.47081 * 299.99841 * 12 11 10 14 14 C 1.50701 * 109.47367 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99759 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00358 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99958 * 359.72711 * 16 14 13 18 18 Si 1.86800 * 120.00175 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47385 * 89.99728 * 18 16 14 20 20 H 1.48500 * 109.47380 * 209.99976 * 18 16 14 21 21 H 1.48504 * 109.46853 * 329.99806 * 18 16 14 22 22 C 1.53004 * 109.46830 * 60.00296 * 13 12 11 23 23 C 1.52995 * 109.47129 * 299.99456 * 22 13 12 24 24 H 1.09003 * 109.47189 * 62.44120 * 1 2 3 25 25 H 1.09003 * 109.47415 * 182.44175 * 1 2 3 26 26 H 1.08997 * 109.47353 * 302.44164 * 1 2 3 27 27 H 1.09010 * 109.46953 * 240.00291 * 2 1 3 28 28 H 1.08993 * 109.47327 * 120.00795 * 2 1 3 29 29 H 1.09005 * 109.47295 * 50.73279 * 4 3 2 30 30 H 1.09006 * 109.47544 * 170.73272 * 4 3 2 31 31 H 1.08994 * 109.47329 * 305.11308 * 5 4 3 32 32 H 1.09001 * 109.47178 * 65.11530 * 5 4 3 33 33 H 1.08994 * 109.47355 * 300.00414 * 6 5 4 34 34 H 1.09001 * 109.46548 * 60.00265 * 6 5 4 35 35 H 1.08996 * 109.47360 * 60.00393 * 8 7 6 36 36 H 1.09006 * 109.46474 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47260 * 299.99693 * 8 7 6 38 38 H 1.09005 * 109.47544 * 60.00120 * 9 7 6 39 39 H 1.09000 * 109.47387 * 180.02562 * 9 7 6 40 40 H 1.08998 * 109.47466 * 300.00178 * 9 7 6 41 41 H 1.08999 * 109.47393 * 296.04873 * 10 3 2 42 42 H 1.08999 * 109.47064 * 60.00034 * 11 10 3 43 43 H 1.08992 * 109.47424 * 299.99619 * 11 10 3 44 44 H 1.09003 * 109.47175 * 180.02562 * 12 11 10 45 45 H 1.08999 * 109.47278 * 60.00190 * 12 11 10 46 46 H 1.08999 * 109.47350 * 300.00305 * 13 12 11 47 47 H 0.97001 * 119.99715 * 180.02562 * 17 16 14 48 48 H 1.08999 * 109.47147 * 59.99885 * 22 13 12 49 49 H 1.09001 * 109.46886 * 179.97438 * 22 13 12 50 50 H 1.08999 * 109.47457 * 300.00239 * 23 22 13 51 51 H 1.09003 * 109.47257 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7146 2.0512 -1.2731 5 6 2.5665 1.4383 -2.3865 6 6 2.3434 2.2150 -3.6857 7 7 3.1618 1.6268 -4.7545 8 6 2.8009 2.1883 -6.0632 9 6 4.5936 1.8071 -4.4810 10 6 1.4678 2.1385 1.1339 11 6 1.8052 1.4151 2.4393 12 6 1.2310 2.2002 3.6204 13 6 1.8389 3.6041 3.6434 14 6 1.2729 4.3776 4.8063 15 1 0.5520 3.9141 5.4635 16 6 1.6753 5.6770 5.0313 17 7 2.5571 6.2396 4.2341 18 14 0.9742 6.6355 6.4732 19 1 1.8291 6.4263 7.6692 20 1 0.9394 8.0814 6.1364 21 1 -0.4034 6.1608 6.7602 22 6 1.5015 4.3273 2.3379 23 6 2.0757 3.5423 1.1569 24 1 -0.3634 0.4755 -0.9111 25 1 -0.3634 -1.0267 0.0438 26 1 -0.3634 0.5513 0.8672 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 0.6586 1.9186 -1.5088 30 1 1.9373 3.1150 -1.1892 31 1 3.6191 1.4896 -2.1087 32 1 2.2794 0.3968 -2.5321 33 1 1.2907 2.1637 -3.9636 34 1 2.6304 3.2564 -3.5402 35 1 2.9618 3.2662 -6.0529 36 1 3.4215 1.7353 -6.8364 37 1 1.7516 1.9794 -6.2714 38 1 4.8476 1.3213 -3.5388 39 1 5.1765 1.3629 -5.2878 40 1 4.8195 2.8713 -4.4134 41 1 0.3855 2.2124 1.0287 42 1 2.8875 1.3412 2.5444 43 1 1.3725 0.4149 2.4227 44 1 1.4717 1.6852 4.5504 45 1 0.1486 2.2746 3.5154 46 1 2.9212 3.5297 3.7483 47 1 2.8405 7.1537 4.3926 48 1 0.4191 4.4017 2.2330 49 1 1.9342 5.3276 2.3545 50 1 3.1581 3.4680 1.2618 51 1 1.8358 4.0578 0.2269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = -12.946823 kcal Electronic energy + Delta-G solvation = -23551.413846 eV Core-core repulsion = 20484.851409 eV Total energy + Delta-G solvation = -3066.562437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.25892 -37.75018 -35.96068 -32.76984 -32.09210 -30.43673 -29.23936 -28.16784 -27.77335 -25.75447 -24.39527 -23.42937 -21.76492 -21.22384 -20.59537 -19.29832 -18.54248 -16.43447 -16.03713 -15.80326 -15.41837 -15.16007 -14.70701 -14.53477 -14.16185 -13.91241 -13.43462 -12.97800 -12.89507 -12.63459 -12.56784 -12.32911 -12.09181 -12.01598 -11.85007 -11.83893 -11.61801 -11.45134 -11.11694 -11.07597 -10.92160 -10.70407 -10.53888 -10.52040 -10.27756 -10.11108 -10.04861 -9.72192 -9.28140 -8.79484 -8.57665 -8.56148 -8.24474 -7.92519 -5.92913 -3.98691 3.32747 3.39497 3.42701 3.71184 4.23375 4.47981 4.87299 4.94644 4.98782 5.15825 5.18756 5.28084 5.33475 5.35974 5.40809 5.42620 5.48884 5.53839 5.57771 5.60931 5.63461 5.69590 5.73202 5.80168 5.95553 6.02382 6.03521 6.20722 6.24715 6.25729 6.34432 6.45385 6.50214 6.53729 6.63557 6.76765 6.82368 6.84039 6.85153 7.04344 7.20346 7.31630 7.45547 7.51299 7.62528 7.81109 8.09616 8.22197 8.53681 9.05661 9.65537 11.12575 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.003454 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.780237 B = 8105.146102 C = 8940.544256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.048 3.952 5 C -0.109 4.109 6 C 0.055 3.945 7 N -0.548 5.548 8 C 0.024 3.976 9 C 0.021 3.979 10 C 0.089 3.911 11 C -0.107 4.107 12 C -0.107 4.107 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.107 4.107 23 C -0.108 4.108 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.025 0.975 47 H 0.258 0.742 48 H 0.029 0.971 49 H 0.091 0.909 50 H 0.059 0.941 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -9.794 -16.621 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.081 4.081 5 C -0.147 4.147 6 C -0.074 4.074 7 N -0.272 5.272 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.018 4.018 11 C -0.145 4.145 12 C -0.145 4.145 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.110 0.890 50 H 0.078 0.922 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.315 -10.137 -16.608 19.459 hybrid contribution -1.154 1.515 0.637 2.008 sum -0.839 -8.622 -15.970 18.168 Atomic orbital electron populations 1.22429 0.98746 1.01834 1.02168 1.22181 0.92615 0.91058 1.02290 1.62286 1.59160 1.01803 1.02298 1.22143 0.97136 0.99484 0.89334 1.21558 1.01233 0.99684 0.92237 1.22136 0.97569 0.96283 0.91388 1.61988 1.04756 1.58106 1.02373 1.22375 1.01745 0.97262 0.91058 1.22445 0.88201 0.99603 1.02516 1.21705 0.96268 0.94308 0.89542 1.21632 1.01257 0.97355 0.94272 1.21618 0.99208 0.98420 0.95298 1.18643 0.96069 0.89198 0.92992 1.21255 1.24684 0.97654 1.11390 0.92919 1.24963 0.95092 0.97738 0.96240 1.69883 1.31712 1.13826 1.37532 0.86671 0.79470 0.79218 0.83077 1.20783 1.21334 1.20052 1.21597 0.98024 1.01650 0.93306 1.21732 1.00691 0.93309 0.98891 0.92921 0.92642 0.91846 0.91206 0.90575 0.94981 0.90305 0.91043 0.91506 0.91070 0.94651 0.95715 0.91514 0.91484 0.90703 0.91696 0.95598 0.94501 0.91941 0.93627 0.93439 0.93766 0.95651 0.93166 0.95172 0.89030 0.92187 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.11 37.16 0.34 -2.00 16 2 C 0.05 0.59 5.40 -3.83 -0.02 0.57 16 3 N -0.53 -7.80 4.55 -226.64 -1.03 -8.83 16 4 C 0.05 0.62 4.69 -3.82 -0.02 0.60 16 5 C -0.11 -1.24 5.03 -26.73 -0.13 -1.37 16 6 C 0.05 0.57 4.96 -3.82 -0.02 0.55 16 7 N -0.55 -5.55 5.02 -251.26 -1.26 -6.81 16 8 C 0.02 0.20 9.57 60.07 0.57 0.77 16 9 C 0.02 0.19 9.32 60.06 0.56 0.75 16 10 C 0.09 1.52 1.35 -67.71 -0.09 1.43 16 11 C -0.11 -1.91 4.74 -26.73 -0.13 -2.04 16 12 C -0.11 -2.24 5.14 -26.73 -0.14 -2.38 16 13 C 0.05 1.23 2.10 -91.77 -0.19 1.03 16 14 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.51 11.33 55.43 0.63 -24.88 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.11 -2.52 4.98 -26.73 -0.13 -2.65 16 23 C -0.11 -2.11 5.01 -26.73 -0.13 -2.24 16 24 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.87 6.02 -51.93 -0.31 0.55 16 27 H 0.07 0.81 6.40 -51.92 -0.33 0.48 16 28 H 0.08 0.99 6.49 -51.93 -0.34 0.65 16 29 H 0.03 0.41 6.26 -51.93 -0.32 0.09 16 30 H 0.08 1.12 5.71 -51.93 -0.30 0.82 16 31 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 32 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16 33 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 34 H 0.04 0.39 8.12 -51.93 -0.42 -0.04 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 39 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.04 0.66 6.42 -51.93 -0.33 0.32 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.72 6.15 -51.93 -0.32 0.40 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 2.42 6.08 -51.93 -0.32 2.11 16 50 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.04 0.74 6.14 -51.93 -0.32 0.42 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -27.96 368.86 -10.76 -38.72 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -9.71 Total: -0.36 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 0.08 Total: -19.79 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -1.67 Total: -40.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.96 -10.76 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.770 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds