Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46509 * 119.99399 * 2 1 4 4 C 1.34769 * 120.00654 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99816 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00284 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.47354 * 180.02562 * 6 4 2 8 8 N 1.46898 * 109.47343 * 180.02562 * 7 6 4 9 9 C 1.46902 * 111.00111 * 66.04245 * 8 7 6 10 10 C 1.46898 * 111.00078 * 189.99607 * 8 7 6 11 11 C 1.52999 * 109.47548 * 295.00001 * 10 8 7 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 C 1.50696 * 109.47264 * 60.00033 * 13 12 11 15 15 H 1.07998 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99662 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00409 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47389 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47102 * 120.00259 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99930 * 18 16 14 22 22 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 13 12 24 24 H 1.09003 * 109.47082 * 269.99275 * 1 2 3 25 25 H 1.08995 * 109.47574 * 30.00177 * 1 2 3 26 26 H 1.08999 * 109.46759 * 150.00309 * 1 2 3 27 27 H 1.08993 * 109.47066 * 270.00283 * 3 2 1 28 28 H 1.08997 * 109.47208 * 30.00192 * 3 2 1 29 29 H 1.09000 * 109.46964 * 150.00023 * 3 2 1 30 30 H 1.09004 * 109.47117 * 60.00150 * 6 4 2 31 31 H 1.09002 * 109.47233 * 300.00244 * 6 4 2 32 32 H 1.08994 * 109.47286 * 59.99800 * 7 6 4 33 33 H 1.09002 * 109.46821 * 300.00094 * 7 6 4 34 34 H 1.09008 * 109.46689 * 183.95707 * 9 8 7 35 35 H 1.09003 * 109.47283 * 303.95381 * 9 8 7 36 36 H 1.08994 * 109.47461 * 63.95735 * 9 8 7 37 37 H 1.09002 * 109.47032 * 54.99709 * 10 8 7 38 38 H 1.08996 * 109.46929 * 59.99097 * 11 10 8 39 39 H 1.09002 * 109.46716 * 299.99902 * 11 10 8 40 40 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 41 41 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 42 42 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 43 43 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 44 44 H 1.08993 * 109.47662 * 180.02562 * 22 13 12 45 45 H 1.09002 * 109.47075 * 300.00932 * 22 13 12 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 22 13 47 47 H 1.09001 * 109.47289 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2174 0.0005 6 6 3.6460 -1.1670 -0.0001 7 6 4.1561 -2.6094 0.0001 8 7 5.6251 -2.6093 0.0001 9 6 6.1515 -2.0523 1.2534 10 6 6.1516 -3.9599 -0.2378 11 6 5.7654 -4.8709 0.9291 12 6 6.3133 -6.2776 0.6809 13 6 7.8376 -6.2179 0.5635 14 6 8.4188 -5.6707 1.8416 15 1 7.7663 -5.3929 2.6561 16 6 9.7837 -5.5238 1.9708 17 7 10.5783 -5.8616 0.9788 18 14 10.5041 -4.8448 3.5549 19 1 9.4065 -4.5428 4.5084 20 1 11.4183 -5.8503 4.1538 21 1 11.2605 -3.6010 3.2615 22 6 8.2239 -5.3070 -0.6035 23 6 7.6760 -3.9002 -0.3554 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.3790 1.5836 -1.0276 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1386 0.5138 30 1 4.0096 -0.6525 0.8895 31 1 4.0089 -0.6537 -0.8905 32 1 3.7925 -3.1235 -0.8896 33 1 3.7931 -3.1230 0.8903 34 1 7.2389 -1.9989 1.1987 35 1 5.7458 -1.0520 1.4051 36 1 5.8606 -2.6925 2.0861 37 1 5.7316 -4.3559 -1.1624 38 1 4.6794 -4.9136 1.0126 39 1 6.1854 -4.4748 1.8537 40 1 5.8928 -6.6735 -0.2435 41 1 6.0384 -6.9265 1.5126 42 1 8.2278 -7.2201 0.3862 43 1 11.5384 -5.7579 1.0695 44 1 9.3098 -5.2647 -0.6875 45 1 7.8034 -5.7028 -1.5280 46 1 8.0965 -3.5044 0.5691 47 1 7.9508 -3.2513 -1.1869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = -41.656951 kcal Electronic energy + Delta-G solvation = -23445.904198 eV Core-core repulsion = 20242.263702 eV Total energy + Delta-G solvation = -3203.640496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07297 -38.75778 -35.86036 -35.53724 -32.41203 -31.19793 -29.58803 -28.49572 -27.98301 -26.69167 -25.49510 -24.53278 -22.37075 -21.23399 -19.72211 -19.21780 -18.42873 -17.22491 -16.30910 -16.24315 -15.73328 -15.11766 -14.74264 -14.61067 -14.24927 -13.65131 -13.38845 -13.30923 -13.17447 -12.99788 -12.89830 -12.66268 -12.42992 -12.32186 -11.83583 -11.56540 -11.40065 -11.33467 -11.03924 -10.93833 -10.79201 -10.72031 -10.49816 -10.15808 -9.97172 -9.91903 -9.48335 -9.18759 -8.95566 -8.82160 -8.57260 -8.22532 -7.73787 -5.92271 -3.96250 2.50806 2.77215 3.30396 3.39317 3.42195 4.18586 4.47428 4.64256 4.75831 4.94764 4.96778 5.04902 5.20178 5.30703 5.33668 5.38133 5.52429 5.58261 5.61057 5.69536 5.83860 5.88415 6.04494 6.12528 6.13865 6.21478 6.34155 6.41898 6.55616 6.61067 6.69493 6.78862 6.86062 6.92993 7.08351 7.14698 7.22221 7.42315 7.56280 7.61205 7.68838 7.81025 8.01599 8.02155 8.23306 8.55028 9.06294 9.66506 11.13638 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.003714 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.942455 B = 7536.756217 C = 7925.831987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.629 5.629 3 C 0.078 3.922 4 C 0.514 3.486 5 O -0.538 6.538 6 C -0.135 4.135 7 C 0.069 3.931 8 N -0.538 5.538 9 C 0.016 3.984 10 C 0.092 3.908 11 C -0.138 4.138 12 C -0.103 4.103 13 C 0.043 3.957 14 C -0.498 4.498 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.107 4.107 23 C -0.090 4.090 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.023 0.977 43 H 0.257 0.743 44 H 0.092 0.908 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 14.511 -2.668 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C -0.065 4.065 4 C 0.302 3.698 5 O -0.414 6.414 6 C -0.175 4.175 7 C -0.060 4.060 8 N -0.261 5.261 9 C -0.132 4.132 10 C -0.015 4.015 11 C -0.177 4.177 12 C -0.141 4.141 13 C 0.025 3.975 14 C -0.536 4.536 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.710 3.290 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.146 4.146 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.032 0.968 46 H 0.090 0.910 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.667 14.260 -3.102 20.690 hybrid contribution 0.141 0.078 1.593 1.601 sum -14.526 14.338 -1.509 20.466 Atomic orbital electron populations 1.21611 0.79448 1.03006 1.01719 1.47816 1.07053 1.06639 1.74888 1.21828 0.97497 0.85112 1.02093 1.20905 0.90661 0.82938 0.75287 1.90705 1.70620 1.30964 1.49118 1.21705 0.90395 1.00720 1.04660 1.21764 0.88400 0.93712 1.02101 1.62321 1.05859 1.23561 1.34365 1.22485 1.01714 0.98232 0.90765 1.21753 0.97084 0.85408 0.97261 1.22061 0.97766 0.97644 1.00186 1.21491 0.99429 0.94697 0.98469 1.18700 0.88856 0.95595 0.94395 1.21169 0.91279 1.41618 0.99544 0.92869 1.24925 0.97297 0.95803 0.95903 1.69875 1.03485 1.48775 1.30851 0.86706 0.79238 0.78755 0.84337 1.19943 1.21203 1.21125 1.21509 1.03125 0.93861 0.96073 1.21420 0.91782 0.98477 1.01143 0.92906 0.91397 0.90542 0.92361 0.91099 0.90557 0.88891 0.88162 0.90543 0.94010 0.90468 0.92725 0.94965 0.91483 0.94564 0.90875 0.94875 0.93818 0.95893 0.93254 0.89017 0.96791 0.90963 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.44 59.85 0.62 1.31 16 2 N -0.63 -5.98 3.27 -189.52 -0.62 -6.60 16 3 C 0.08 0.46 10.24 59.85 0.61 1.07 16 4 C 0.51 6.51 7.67 -10.99 -0.08 6.43 16 5 O -0.54 -8.95 15.56 5.56 0.09 -8.86 16 6 C -0.13 -1.54 4.18 -27.89 -0.12 -1.66 16 7 C 0.07 1.02 3.69 -3.83 -0.01 1.01 16 8 N -0.54 -8.67 4.75 -234.89 -1.12 -9.78 16 9 C 0.02 0.25 8.62 60.07 0.52 0.77 16 10 C 0.09 1.73 2.22 -67.71 -0.15 1.58 16 11 C -0.14 -2.71 4.28 -26.73 -0.11 -2.83 16 12 C -0.10 -2.20 5.41 -26.73 -0.14 -2.35 16 13 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 14 C -0.50 -13.21 6.61 -34.44 -0.23 -13.44 16 15 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 18 Si 0.88 21.03 29.54 -169.99 -5.02 16.00 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 23 C -0.09 -1.89 4.78 -26.73 -0.13 -2.02 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 26 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 29 H 0.08 0.41 6.44 -51.93 -0.33 0.08 16 30 H 0.09 0.93 5.73 -51.93 -0.30 0.63 16 31 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 33 H 0.04 0.68 6.89 -51.93 -0.36 0.33 16 34 H 0.08 1.29 6.33 -51.92 -0.33 0.96 16 35 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 36 H 0.03 0.53 6.28 -51.93 -0.33 0.20 16 37 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 38 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 39 H 0.07 1.55 4.86 -51.93 -0.25 1.30 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 1.64 5.50 -51.93 -0.29 1.36 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -30.43 347.88 -8.59 -39.02 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.10 Total: -0.15 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.30 Total: -10.41 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -1.11 Total: -40.85 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.43 -8.59 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.634 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds