Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46509 * 119.99399 * 2 1 4 4 C 1.34769 * 120.00654 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99816 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00284 * 179.97438 * 4 2 1 7 7 C 1.52998 * 109.47354 * 180.02562 * 6 4 2 8 8 N 1.46898 * 109.47343 * 180.02562 * 7 6 4 9 9 C 1.46902 * 111.00111 * 66.04245 * 8 7 6 10 10 C 1.46898 * 111.00078 * 189.99607 * 8 7 6 11 11 C 1.52999 * 109.47548 * 295.00001 * 10 8 7 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 C 1.50696 * 109.47264 * 60.00033 * 13 12 11 15 15 H 1.07998 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99662 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00409 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47389 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47102 * 120.00259 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99930 * 18 16 14 22 22 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 13 12 24 24 H 1.09003 * 109.47082 * 269.99275 * 1 2 3 25 25 H 1.08995 * 109.47574 * 30.00177 * 1 2 3 26 26 H 1.08999 * 109.46759 * 150.00309 * 1 2 3 27 27 H 1.08993 * 109.47066 * 270.00283 * 3 2 1 28 28 H 1.08997 * 109.47208 * 30.00192 * 3 2 1 29 29 H 1.09000 * 109.46964 * 150.00023 * 3 2 1 30 30 H 1.09004 * 109.47117 * 60.00150 * 6 4 2 31 31 H 1.09002 * 109.47233 * 300.00244 * 6 4 2 32 32 H 1.08994 * 109.47286 * 59.99800 * 7 6 4 33 33 H 1.09002 * 109.46821 * 300.00094 * 7 6 4 34 34 H 1.09008 * 109.46689 * 183.95707 * 9 8 7 35 35 H 1.09003 * 109.47283 * 303.95381 * 9 8 7 36 36 H 1.08994 * 109.47461 * 63.95735 * 9 8 7 37 37 H 1.09002 * 109.47032 * 54.99709 * 10 8 7 38 38 H 1.08996 * 109.46929 * 59.99097 * 11 10 8 39 39 H 1.09002 * 109.46716 * 299.99902 * 11 10 8 40 40 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 41 41 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 42 42 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 43 43 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 44 44 H 1.08993 * 109.47662 * 180.02562 * 22 13 12 45 45 H 1.09002 * 109.47075 * 300.00932 * 22 13 12 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 22 13 47 47 H 1.09001 * 109.47289 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2174 0.0005 6 6 3.6460 -1.1670 -0.0001 7 6 4.1561 -2.6094 0.0001 8 7 5.6251 -2.6093 0.0001 9 6 6.1515 -2.0523 1.2534 10 6 6.1516 -3.9599 -0.2378 11 6 5.7654 -4.8709 0.9291 12 6 6.3133 -6.2776 0.6809 13 6 7.8376 -6.2179 0.5635 14 6 8.4188 -5.6707 1.8416 15 1 7.7663 -5.3929 2.6561 16 6 9.7837 -5.5238 1.9708 17 7 10.5783 -5.8616 0.9788 18 14 10.5041 -4.8448 3.5549 19 1 9.4065 -4.5428 4.5084 20 1 11.4183 -5.8503 4.1538 21 1 11.2605 -3.6010 3.2615 22 6 8.2239 -5.3070 -0.6035 23 6 7.6760 -3.9002 -0.3554 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 2.3790 1.5836 -1.0276 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1386 0.5138 30 1 4.0096 -0.6525 0.8895 31 1 4.0089 -0.6537 -0.8905 32 1 3.7925 -3.1235 -0.8896 33 1 3.7931 -3.1230 0.8903 34 1 7.2389 -1.9989 1.1987 35 1 5.7458 -1.0520 1.4051 36 1 5.8606 -2.6925 2.0861 37 1 5.7316 -4.3559 -1.1624 38 1 4.6794 -4.9136 1.0126 39 1 6.1854 -4.4748 1.8537 40 1 5.8928 -6.6735 -0.2435 41 1 6.0384 -6.9265 1.5126 42 1 8.2278 -7.2201 0.3862 43 1 11.5384 -5.7579 1.0695 44 1 9.3098 -5.2647 -0.6875 45 1 7.8034 -5.7028 -1.5280 46 1 8.0965 -3.5044 0.5691 47 1 7.9508 -3.2513 -1.1869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -60.742527 kcal Electronic energy + Delta-G solvation = -23446.731811 eV Core-core repulsion = 20242.263702 eV Total energy + Delta-G solvation = -3204.468109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05275 -40.24070 -37.26682 -36.52601 -34.24587 -32.53027 -31.30380 -29.89667 -28.87446 -27.62426 -26.92921 -26.12427 -23.77860 -22.84503 -21.31488 -20.20234 -20.08663 -18.14410 -17.72679 -17.19753 -17.11998 -16.68562 -16.29711 -15.80124 -15.65603 -15.07780 -14.96367 -14.69037 -14.34741 -14.25503 -13.70778 -13.42783 -13.35338 -13.32051 -13.19096 -13.10487 -13.00749 -12.85024 -12.70152 -12.55219 -12.38323 -12.30329 -12.04122 -11.81643 -11.70406 -11.32710 -11.01452 -10.88874 -10.67004 -10.51987 -10.27415 -9.68225 -9.11748 -8.01027 -6.11251 1.39965 1.43361 1.52738 1.59222 2.04220 2.46889 3.03938 3.26889 3.72040 3.92407 4.05993 4.10673 4.17373 4.34801 4.40502 4.45208 4.46370 4.50786 4.61687 4.68790 4.75202 4.78934 4.80309 4.87507 4.89935 4.91641 4.97465 4.98778 5.01546 5.06481 5.08690 5.19497 5.21972 5.41993 5.48623 5.52528 5.68773 5.71545 5.76319 5.93246 6.17708 6.23427 6.29096 6.33542 6.48562 6.97797 7.14420 7.54345 9.04065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.003714 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.942455 B = 7536.756217 C = 7925.831987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.625 5.625 3 C 0.070 3.930 4 C 0.507 3.493 5 O -0.590 6.590 6 C -0.123 4.123 7 C 0.073 3.927 8 N -0.531 5.531 9 C 0.016 3.984 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.099 4.099 13 C 0.039 3.961 14 C -0.503 4.503 15 H 0.049 0.951 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.280 1.280 22 C -0.103 4.103 23 C -0.079 4.079 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.039 0.961 42 H -0.013 1.013 43 H 0.257 0.743 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.053 0.947 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 17.343 -2.396 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.358 5.358 3 C -0.072 4.072 4 C 0.296 3.704 5 O -0.470 6.470 6 C -0.163 4.163 7 C -0.055 4.055 8 N -0.253 5.253 9 C -0.132 4.132 10 C -0.009 4.009 11 C -0.167 4.167 12 C -0.137 4.137 13 C 0.021 3.979 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.767 3.233 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.037 0.963 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.770 17.148 -2.826 23.468 hybrid contribution 0.446 -0.789 1.489 1.743 sum -15.324 16.359 -1.337 22.456 Atomic orbital electron populations 1.21734 0.78773 1.03486 1.02186 1.47960 1.07801 1.07027 1.72991 1.22120 0.97906 0.83714 1.03459 1.21121 0.91138 0.83164 0.75004 1.90686 1.71526 1.32935 1.51898 1.21604 0.89683 0.98488 1.06509 1.21707 0.87111 0.96031 1.00699 1.62307 1.06724 1.21488 1.34808 1.22526 1.00979 0.99888 0.89777 1.21563 0.95481 0.86882 0.96930 1.21947 0.98237 0.96493 0.99980 1.21411 0.97121 0.96089 0.99085 1.18681 0.90995 0.93783 0.94451 1.21352 0.91490 1.41317 1.00007 0.93288 1.25594 0.97742 0.96205 0.98653 1.70014 1.03590 1.49722 1.32491 0.85775 0.78474 0.78112 0.80954 1.19305 1.21283 1.20543 1.21372 1.01347 0.95416 0.96018 1.21238 0.93332 0.96630 1.00479 0.92464 0.88224 0.92742 0.91025 0.88950 0.89731 0.86852 0.86236 0.91707 0.95788 0.91936 0.89057 0.96275 0.91118 0.93301 0.92383 0.93492 0.94186 0.99495 0.93334 0.92088 0.95684 0.92876 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.44 127.77 1.33 2.47 16 2 N -0.62 -10.24 3.27 -871.89 -2.85 -13.10 16 3 C 0.07 0.54 10.24 127.77 1.31 1.85 16 4 C 0.51 11.98 7.67 87.66 0.67 12.65 16 5 O -0.59 -19.53 15.56 -3.04 -0.05 -19.58 16 6 C -0.12 -2.47 4.18 29.85 0.12 -2.34 16 7 C 0.07 2.04 3.69 86.30 0.32 2.36 16 8 N -0.53 -16.09 4.75 -897.04 -4.26 -20.36 16 9 C 0.02 0.47 8.62 127.69 1.10 1.57 16 10 C 0.10 3.62 2.22 44.92 0.10 3.72 16 11 C -0.13 -4.96 4.28 30.59 0.13 -4.83 16 12 C -0.10 -4.25 5.41 30.59 0.17 -4.08 16 13 C 0.04 1.99 2.59 -11.54 -0.03 1.96 16 14 C -0.50 -27.16 6.61 25.60 0.17 -26.99 16 15 H 0.05 2.64 6.71 -2.91 -0.02 2.62 16 16 C 0.02 0.88 5.30 84.66 0.45 1.32 16 17 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 18 Si 0.94 43.39 29.54 68.60 2.03 45.41 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.10 -4.90 5.24 30.59 0.16 -4.74 16 23 C -0.08 -3.28 4.78 30.60 0.15 -3.13 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 26 H 0.05 1.02 7.42 -2.39 -0.02 1.01 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 29 H 0.08 0.54 6.44 -2.39 -0.02 0.52 16 30 H 0.11 1.81 5.73 -2.39 -0.01 1.80 16 31 H 0.12 1.98 8.11 -2.39 -0.02 1.96 16 32 H 0.06 1.97 7.96 -2.39 -0.02 1.95 16 33 H 0.02 0.76 6.89 -2.39 -0.02 0.74 16 34 H 0.06 2.00 6.33 -2.38 -0.02 1.98 16 35 H 0.09 1.93 6.30 -2.39 -0.02 1.92 16 36 H 0.02 0.60 6.28 -2.39 -0.02 0.58 16 37 H 0.07 2.55 8.03 -2.39 -0.02 2.53 16 38 H 0.05 1.78 6.75 -2.39 -0.02 1.76 16 39 H 0.06 2.44 4.86 -2.39 -0.01 2.43 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 45 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 2.41 5.50 -2.39 -0.01 2.40 16 47 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.48 347.88 2.19 -65.29 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.93 Total: 13.16 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 6.15 Total: -18.22 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -6.87 Total: -86.06 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.48 2.19 -65.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds