Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00317 * 2 1 4 4 C 1.53004 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46917 * 173.70283 * 4 3 2 6 6 C 1.46898 * 110.99439 * 193.66129 * 5 4 3 7 7 C 1.52994 * 109.47546 * 21.62766 * 6 5 4 8 8 C 1.53001 * 109.47026 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47232 * 299.99642 * 8 7 6 10 10 C 1.50703 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00205 * 179.72677 * 12 10 9 14 14 Si 1.86801 * 119.99945 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46974 * 90.00314 * 14 12 10 16 16 H 1.48498 * 109.47380 * 209.99788 * 14 12 10 17 17 H 1.48496 * 109.47239 * 330.00489 * 14 12 10 18 18 C 1.52998 * 109.47101 * 60.00433 * 9 8 7 19 19 C 1.52998 * 109.46942 * 141.63004 * 6 5 4 20 20 C 1.46904 * 110.99543 * 69.71034 * 5 4 3 21 21 C 1.53009 * 109.46762 * 152.75254 * 20 5 4 22 22 C 1.52992 * 109.47025 * 272.74694 * 20 5 4 23 23 C 1.52998 * 109.47242 * 32.75352 * 20 5 4 24 24 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46758 * 299.99596 * 1 2 3 26 26 H 1.08998 * 109.47407 * 59.99632 * 1 2 3 27 27 H 1.00901 * 111.00275 * 123.95778 * 2 1 3 28 28 H 1.08998 * 109.47065 * 60.00481 * 3 2 1 29 29 H 1.08996 * 109.47397 * 300.00363 * 3 2 1 30 30 H 1.08996 * 109.46695 * 53.70692 * 4 3 2 31 31 H 1.09004 * 109.47229 * 293.70543 * 4 3 2 32 32 H 1.08998 * 109.47028 * 261.62395 * 6 5 4 33 33 H 1.08998 * 109.47260 * 59.99771 * 7 6 5 34 34 H 1.08999 * 109.46979 * 299.99624 * 7 6 5 35 35 H 1.09006 * 109.46705 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47488 * 60.00205 * 8 7 6 37 37 H 1.08998 * 109.47241 * 300.00175 * 9 8 7 38 38 H 0.96999 * 120.00101 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.47284 * 59.99768 * 18 9 8 40 40 H 1.08995 * 109.47688 * 179.97438 * 18 9 8 41 41 H 1.09003 * 109.46864 * 300.00030 * 19 6 5 42 42 H 1.09006 * 109.47584 * 59.99305 * 19 6 5 43 43 H 1.08997 * 109.46953 * 57.75103 * 21 20 5 44 44 H 1.08997 * 109.47092 * 177.75676 * 21 20 5 45 45 H 1.09003 * 109.46854 * 297.75643 * 21 20 5 46 46 H 1.09004 * 109.46948 * 66.34111 * 22 20 5 47 47 H 1.09006 * 109.47234 * 186.33821 * 22 20 5 48 48 H 1.08997 * 109.47562 * 306.34016 * 22 20 5 49 49 H 1.08997 * 109.47476 * 59.99823 * 23 20 5 50 50 H 1.09000 * 109.46577 * 179.97438 * 23 20 5 51 51 H 1.09001 * 109.47056 * 299.99486 * 23 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5250 1.3305 0.0006 5 7 4.0513 2.6936 -0.1513 6 6 5.4832 2.6715 -0.4783 7 6 5.8489 1.3114 -1.0761 8 6 7.3402 1.2888 -1.4173 9 6 7.6480 2.3913 -2.4324 10 6 9.1168 2.3685 -2.7689 11 1 9.7657 1.6402 -2.3054 12 6 9.6321 3.2775 -3.6685 13 7 10.9149 3.2611 -3.9581 14 14 8.5095 4.5367 -4.4707 15 1 8.4655 5.7639 -3.6354 16 1 9.0293 4.8749 -5.8200 17 1 7.1414 3.9727 -4.5942 18 6 7.2823 3.7514 -1.8347 19 6 5.7916 3.7741 -1.4932 20 6 3.7990 3.4927 1.0553 21 6 4.8671 4.5814 1.1784 22 6 2.4175 4.1425 0.9570 23 6 3.8501 2.5866 2.2871 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5262 0.7813 28 1 1.6461 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 3.8722 0.7126 -0.8274 31 1 3.8768 0.9079 0.9418 32 1 6.0655 2.8385 0.4278 33 1 5.2667 1.1444 -1.9822 34 1 5.6293 0.5259 -0.3530 35 1 7.6007 0.3199 -1.8435 36 1 7.9229 1.4560 -0.5113 37 1 7.0654 2.2240 -3.3383 38 1 11.2773 3.9003 -4.5913 39 1 7.8649 3.9186 -0.9288 40 1 7.5020 4.5369 -2.5576 41 1 5.2092 3.6071 -2.3993 42 1 5.5310 4.7432 -1.0674 43 1 4.8575 5.2027 0.2829 44 1 4.6573 5.1991 2.0516 45 1 5.8475 4.1178 1.2884 46 1 1.6496 3.3693 0.9827 47 1 2.2756 4.8234 1.7964 48 1 2.3428 4.6979 0.0221 49 1 4.8344 2.1236 2.3571 50 1 3.6634 3.1797 3.1823 51 1 3.0892 1.8110 2.1994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = 19.430649 kcal Electronic energy + Delta-G solvation = -24634.071917 eV Core-core repulsion = 21568.913473 eV Total energy + Delta-G solvation = -3065.158444 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28565 -37.14862 -35.94466 -33.22333 -32.07620 -30.72796 -29.75488 -27.82671 -27.45806 -26.93927 -24.43854 -23.91267 -22.64843 -21.14011 -20.58564 -18.94598 -18.43980 -16.77181 -16.53315 -15.94359 -15.49760 -15.01789 -14.71682 -14.33692 -13.93745 -13.61829 -13.57638 -13.37179 -13.06510 -12.81483 -12.72407 -12.37779 -12.30226 -12.14160 -11.85877 -11.73986 -11.71154 -11.39960 -11.29193 -11.09435 -10.97768 -10.81561 -10.70153 -10.61477 -10.31599 -10.18765 -9.93292 -9.71991 -9.38029 -8.92533 -8.78729 -8.57626 -8.44475 -7.99342 -6.00641 -3.98789 3.32804 3.43953 3.47386 3.70148 4.33264 4.48065 4.72868 4.88399 4.96736 5.04136 5.13770 5.21763 5.23372 5.28781 5.34894 5.37128 5.45321 5.49211 5.55656 5.63797 5.67163 5.70605 5.76736 5.83301 5.87231 5.90330 5.98146 5.99065 6.13232 6.14069 6.24186 6.25046 6.32024 6.38524 6.41218 6.46032 6.67173 6.76221 6.80627 6.82230 7.00949 7.10959 7.13597 7.30870 7.41471 7.43459 7.66842 7.86900 8.60492 9.03961 9.63053 11.12888 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004589 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.775244 B = 6100.268716 C = 6525.401664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.696 5.696 3 C 0.053 3.947 4 C 0.040 3.960 5 N -0.523 5.523 6 C 0.086 3.914 7 C -0.124 4.124 8 C -0.096 4.096 9 C 0.015 3.985 10 C -0.511 4.511 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.300 1.300 17 H -0.264 1.264 18 C -0.119 4.119 19 C -0.111 4.111 20 C 0.102 3.898 21 C -0.161 4.161 22 C -0.143 4.143 23 C -0.176 4.176 24 H 0.065 0.935 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.338 0.662 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.738 -1.473 12.220 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.327 5.327 3 C -0.075 4.075 4 C -0.088 4.088 5 N -0.247 5.247 6 C -0.021 4.021 7 C -0.162 4.162 8 C -0.135 4.135 9 C -0.004 4.004 10 C -0.549 4.549 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.228 1.228 17 H -0.189 1.189 18 C -0.156 4.156 19 C -0.149 4.149 20 C 0.013 3.987 21 C -0.218 4.218 22 C -0.201 4.201 23 C -0.234 4.234 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.803 -1.230 11.037 22.705 hybrid contribution -0.219 0.721 1.131 1.359 sum -20.022 -0.510 12.169 23.436 Atomic orbital electron populations 1.22155 0.87843 1.01651 1.00283 1.60287 1.07597 1.14966 1.49834 1.22393 0.95353 0.88583 1.01218 1.22399 0.93655 0.90998 1.01768 1.62289 1.16667 1.12054 1.33697 1.21814 0.86010 0.96377 0.97888 1.22006 0.98650 0.95318 1.00201 1.21431 0.92618 0.99853 0.99564 1.19138 0.97041 0.90369 0.93882 1.21114 0.91911 1.17162 1.24724 0.91076 1.25032 0.94767 0.97345 0.96201 1.69910 1.12198 1.37233 1.35059 0.86830 0.81636 0.81979 0.77696 1.20735 1.22796 1.18880 1.21945 0.93167 1.00188 1.00349 1.21816 0.97576 0.97057 0.98408 1.21068 0.95975 0.93479 0.88189 1.22377 0.98689 0.98439 1.02284 1.22126 0.95824 1.00399 1.01719 1.22507 1.01883 1.00403 0.98649 0.91570 0.96364 0.91678 0.84531 0.94356 0.90278 0.88680 0.94240 0.92470 0.91650 0.93011 0.92703 0.93069 0.95629 0.92826 0.92607 0.93642 0.92254 0.92525 0.90751 0.92781 0.91518 0.92019 0.93097 0.91869 0.92606 0.92528 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.06 0.64 0.89 16 2 N -0.70 -6.80 6.86 -121.14 -0.83 -7.63 16 3 C 0.05 0.56 4.42 -3.83 -0.02 0.54 16 4 C 0.04 0.47 3.54 -3.82 -0.01 0.46 16 5 N -0.52 -6.85 4.23 -211.10 -0.89 -7.74 16 6 C 0.09 1.33 1.77 -67.72 -0.12 1.21 16 7 C -0.12 -2.01 3.79 -26.73 -0.10 -2.11 16 8 C -0.10 -1.90 5.14 -26.73 -0.14 -2.04 16 9 C 0.01 0.34 1.69 -91.77 -0.16 0.18 16 10 C -0.51 -14.44 9.14 -34.44 -0.31 -14.76 16 11 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 12 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 13 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 14 Si 0.89 22.43 24.37 -169.99 -4.14 18.29 16 15 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 16 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 17 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 18 C -0.12 -2.54 4.68 -26.76 -0.13 -2.66 16 19 C -0.11 -1.95 5.23 -26.76 -0.14 -2.09 16 20 C 0.10 1.17 0.70 -131.60 -0.09 1.08 16 21 C -0.16 -1.92 7.14 37.16 0.27 -1.66 16 22 C -0.14 -1.46 8.29 37.15 0.31 -1.16 16 23 C -0.18 -1.80 7.14 37.16 0.27 -1.54 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.34 2.89 8.81 -39.29 -0.35 2.54 16 28 H 0.04 0.38 4.16 -51.93 -0.22 0.17 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.28 5.37 -51.93 -0.28 1.00 16 31 H 0.04 0.45 5.56 -51.93 -0.29 0.16 16 32 H 0.06 0.90 5.50 -51.93 -0.29 0.61 16 33 H 0.06 1.10 7.47 -51.93 -0.39 0.71 16 34 H 0.05 0.75 6.64 -51.93 -0.34 0.40 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.92 5.19 -51.93 -0.27 0.65 16 43 H 0.07 0.96 5.64 -51.93 -0.29 0.67 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.87 5.84 -51.93 -0.30 0.56 16 46 H 0.06 0.60 4.65 -51.93 -0.24 0.36 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.59 5.06 -51.93 -0.26 0.33 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -29.70 351.09 -8.78 -38.48 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.15 Total: 2.42 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.95 Total: -42.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.70 -8.78 -38.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.911 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds