Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00317 * 2 1 4 4 C 1.53004 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46907 * 109.46917 * 173.70283 * 4 3 2 6 6 C 1.46898 * 110.99439 * 193.66129 * 5 4 3 7 7 C 1.52994 * 109.47546 * 21.62766 * 6 5 4 8 8 C 1.53001 * 109.47026 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47232 * 299.99642 * 8 7 6 10 10 C 1.50703 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00205 * 179.72677 * 12 10 9 14 14 Si 1.86801 * 119.99945 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46974 * 90.00314 * 14 12 10 16 16 H 1.48498 * 109.47380 * 209.99788 * 14 12 10 17 17 H 1.48496 * 109.47239 * 330.00489 * 14 12 10 18 18 C 1.52998 * 109.47101 * 60.00433 * 9 8 7 19 19 C 1.52998 * 109.46942 * 141.63004 * 6 5 4 20 20 C 1.46904 * 110.99543 * 69.71034 * 5 4 3 21 21 C 1.53009 * 109.46762 * 152.75254 * 20 5 4 22 22 C 1.52992 * 109.47025 * 272.74694 * 20 5 4 23 23 C 1.52998 * 109.47242 * 32.75352 * 20 5 4 24 24 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46758 * 299.99596 * 1 2 3 26 26 H 1.08998 * 109.47407 * 59.99632 * 1 2 3 27 27 H 1.00901 * 111.00275 * 123.95778 * 2 1 3 28 28 H 1.08998 * 109.47065 * 60.00481 * 3 2 1 29 29 H 1.08996 * 109.47397 * 300.00363 * 3 2 1 30 30 H 1.08996 * 109.46695 * 53.70692 * 4 3 2 31 31 H 1.09004 * 109.47229 * 293.70543 * 4 3 2 32 32 H 1.08998 * 109.47028 * 261.62395 * 6 5 4 33 33 H 1.08998 * 109.47260 * 59.99771 * 7 6 5 34 34 H 1.08999 * 109.46979 * 299.99624 * 7 6 5 35 35 H 1.09006 * 109.46705 * 180.02562 * 8 7 6 36 36 H 1.09003 * 109.47488 * 60.00205 * 8 7 6 37 37 H 1.08998 * 109.47241 * 300.00175 * 9 8 7 38 38 H 0.96999 * 120.00101 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.47284 * 59.99768 * 18 9 8 40 40 H 1.08995 * 109.47688 * 179.97438 * 18 9 8 41 41 H 1.09003 * 109.46864 * 300.00030 * 19 6 5 42 42 H 1.09006 * 109.47584 * 59.99305 * 19 6 5 43 43 H 1.08997 * 109.46953 * 57.75103 * 21 20 5 44 44 H 1.08997 * 109.47092 * 177.75676 * 21 20 5 45 45 H 1.09003 * 109.46854 * 297.75643 * 21 20 5 46 46 H 1.09004 * 109.46948 * 66.34111 * 22 20 5 47 47 H 1.09006 * 109.47234 * 186.33821 * 22 20 5 48 48 H 1.08997 * 109.47562 * 306.34016 * 22 20 5 49 49 H 1.08997 * 109.47476 * 59.99823 * 23 20 5 50 50 H 1.09000 * 109.46577 * 179.97438 * 23 20 5 51 51 H 1.09001 * 109.47056 * 299.99486 * 23 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5250 1.3305 0.0006 5 7 4.0513 2.6936 -0.1513 6 6 5.4832 2.6715 -0.4783 7 6 5.8489 1.3114 -1.0761 8 6 7.3402 1.2888 -1.4173 9 6 7.6480 2.3913 -2.4324 10 6 9.1168 2.3685 -2.7689 11 1 9.7657 1.6402 -2.3054 12 6 9.6321 3.2775 -3.6685 13 7 10.9149 3.2611 -3.9581 14 14 8.5095 4.5367 -4.4707 15 1 8.4655 5.7639 -3.6354 16 1 9.0293 4.8749 -5.8200 17 1 7.1414 3.9727 -4.5942 18 6 7.2823 3.7514 -1.8347 19 6 5.7916 3.7741 -1.4932 20 6 3.7990 3.4927 1.0553 21 6 4.8671 4.5814 1.1784 22 6 2.4175 4.1425 0.9570 23 6 3.8501 2.5866 2.2871 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5262 0.7813 28 1 1.6461 1.8947 0.8900 29 1 1.6460 1.8947 -0.8899 30 1 3.8722 0.7126 -0.8274 31 1 3.8768 0.9079 0.9418 32 1 6.0655 2.8385 0.4278 33 1 5.2667 1.1444 -1.9822 34 1 5.6293 0.5259 -0.3530 35 1 7.6007 0.3199 -1.8435 36 1 7.9229 1.4560 -0.5113 37 1 7.0654 2.2240 -3.3383 38 1 11.2773 3.9003 -4.5913 39 1 7.8649 3.9186 -0.9288 40 1 7.5020 4.5369 -2.5576 41 1 5.2092 3.6071 -2.3993 42 1 5.5310 4.7432 -1.0674 43 1 4.8575 5.2027 0.2829 44 1 4.6573 5.1991 2.0516 45 1 5.8475 4.1178 1.2884 46 1 1.6496 3.3693 0.9827 47 1 2.2756 4.8234 1.7964 48 1 2.3428 4.6979 0.0221 49 1 4.8344 2.1236 2.3571 50 1 3.6634 3.1797 3.1823 51 1 3.0892 1.8110 2.1994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -1.037664 kcal Electronic energy + Delta-G solvation = -24634.959490 eV Core-core repulsion = 21568.913473 eV Total energy + Delta-G solvation = -3066.046017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37696 -38.55595 -36.77361 -34.90581 -33.56993 -32.16170 -31.15745 -29.11836 -28.27445 -27.82762 -25.89657 -25.11627 -23.82860 -22.38000 -22.08190 -20.48184 -19.43714 -18.72787 -17.62143 -17.23947 -16.48083 -16.30503 -15.86335 -15.43950 -15.09151 -14.95949 -14.77309 -14.64467 -14.53664 -14.27764 -13.85045 -13.60343 -13.48515 -13.10240 -13.03628 -12.95310 -12.68127 -12.64820 -12.46362 -12.37319 -12.18363 -12.05309 -11.94385 -11.86908 -11.80839 -11.57053 -11.43036 -11.35026 -11.05643 -10.84837 -10.63700 -10.43579 -9.29214 -9.02274 -8.28698 -6.31098 1.30097 1.36107 1.47241 2.33658 2.75549 3.07347 3.53446 3.83709 3.91558 3.95004 4.05230 4.17442 4.25041 4.28077 4.39366 4.48130 4.50180 4.57056 4.58849 4.64002 4.66872 4.70460 4.74438 4.75455 4.77689 4.80092 4.92197 4.96618 5.01942 5.03812 5.04836 5.06126 5.12730 5.15217 5.16611 5.23414 5.37108 5.40034 5.45682 5.51721 5.58304 5.62902 5.73374 5.85819 6.06874 6.27281 6.35578 6.40586 6.50847 6.76741 7.34517 8.88459 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004589 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.775244 B = 6100.268716 C = 6525.401664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.709 5.709 3 C 0.065 3.935 4 C 0.042 3.958 5 N -0.527 5.527 6 C 0.094 3.906 7 C -0.112 4.112 8 C -0.092 4.092 9 C 0.014 3.986 10 C -0.517 4.517 11 H 0.031 0.969 12 C 0.010 3.990 13 N -0.953 5.953 14 Si 0.950 3.050 15 H -0.267 1.267 16 H -0.301 1.301 17 H -0.249 1.249 18 C -0.115 4.115 19 C -0.102 4.102 20 C 0.100 3.900 21 C -0.161 4.161 22 C -0.138 4.138 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.346 0.654 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.264 0.736 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.934 -0.920 13.735 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.340 5.340 3 C -0.064 4.064 4 C -0.086 4.086 5 N -0.251 5.251 6 C -0.013 4.013 7 C -0.149 4.149 8 C -0.131 4.131 9 C -0.005 4.005 10 C -0.555 4.555 11 H 0.049 0.951 12 C -0.186 4.186 13 N -0.594 5.594 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.229 1.229 17 H -0.173 1.173 18 C -0.153 4.153 19 C -0.140 4.140 20 C 0.010 3.990 21 C -0.218 4.218 22 C -0.196 4.196 23 C -0.230 4.230 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.026 -0.691 12.575 26.245 hybrid contribution 0.833 0.463 0.706 1.186 sum -22.193 -0.228 13.282 25.865 Atomic orbital electron populations 1.22181 0.86789 1.02461 1.00447 1.60257 1.08693 1.14550 1.50531 1.22208 0.94129 0.89133 1.00964 1.22377 0.94657 0.90035 1.01534 1.62238 1.14663 1.13039 1.35164 1.21595 0.87839 0.94729 0.97174 1.21895 0.95427 0.96873 1.00752 1.21335 0.95463 0.98034 0.98220 1.19106 0.93464 0.93172 0.94756 1.21480 0.94204 1.15769 1.24036 0.95067 1.25878 0.96102 0.99634 0.97001 1.70058 1.14307 1.38681 1.36367 0.85811 0.80128 0.79753 0.76525 1.19290 1.22926 1.17296 1.21806 0.96051 0.97923 0.99491 1.21727 0.94313 0.99072 0.98925 1.21177 0.96494 0.93337 0.87946 1.22363 0.98237 0.98617 1.02564 1.22077 0.95015 1.00645 1.01826 1.22455 1.01586 1.00463 0.98495 0.90505 0.95422 0.92228 0.83664 0.93279 0.91769 0.90182 0.93328 0.92377 0.92016 0.90734 0.93520 0.93493 0.96505 0.92702 0.93025 0.95140 0.92948 0.90743 0.91808 0.91031 0.92791 0.91376 0.91614 0.92906 0.93582 0.91193 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.70 127.69 1.37 1.78 16 2 N -0.71 -12.04 6.86 -537.17 -3.68 -15.72 16 3 C 0.06 1.19 4.42 86.31 0.38 1.57 16 4 C 0.04 0.89 3.54 86.30 0.31 1.19 16 5 N -0.53 -12.48 4.23 -821.77 -3.47 -15.96 16 6 C 0.09 2.73 1.77 44.91 0.08 2.81 16 7 C -0.11 -3.46 3.79 30.59 0.12 -3.34 16 8 C -0.09 -3.64 5.14 30.59 0.16 -3.48 16 9 C 0.01 0.65 1.69 -11.54 -0.02 0.63 16 10 C -0.52 -30.21 9.14 25.60 0.23 -29.98 16 11 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 12 C 0.01 0.61 5.45 84.65 0.46 1.07 16 13 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 14 Si 0.95 46.76 24.37 68.60 1.67 48.43 16 15 H -0.27 -12.47 6.87 99.48 0.68 -11.78 16 16 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 17 H -0.25 -11.53 6.53 99.48 0.65 -10.88 16 18 C -0.11 -4.83 4.68 30.58 0.14 -4.68 16 19 C -0.10 -3.43 5.23 30.58 0.16 -3.27 16 20 C 0.10 1.97 0.70 3.53 0.00 1.97 16 21 C -0.16 -3.42 7.14 71.99 0.51 -2.91 16 22 C -0.14 -2.36 8.29 71.98 0.60 -1.77 16 23 C -0.17 -2.93 7.14 71.98 0.51 -2.42 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 25 H 0.03 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.35 4.93 8.81 -89.69 -0.79 4.14 16 28 H 0.05 0.80 4.16 -2.39 -0.01 0.79 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.97 5.37 -2.39 -0.01 1.95 16 31 H 0.05 0.96 5.56 -2.39 -0.01 0.94 16 32 H 0.06 1.71 5.50 -2.39 -0.01 1.69 16 33 H 0.06 1.98 7.47 -2.39 -0.02 1.96 16 34 H 0.07 1.99 6.64 -2.39 -0.02 1.97 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 38 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 1.37 3.27 -2.39 -0.01 1.36 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.25 5.19 -2.38 -0.01 2.24 16 43 H 0.06 1.48 5.64 -2.39 -0.01 1.47 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.29 5.84 -2.39 -0.01 1.27 16 46 H 0.07 1.07 4.65 -2.38 -0.01 1.06 16 47 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 0.89 7.98 -2.39 -0.02 0.87 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 1.07 5.06 -2.39 -0.01 1.05 16 Total: -1.00 -65.58 351.09 -0.14 -65.72 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.03 Total: 19.22 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 5.01 Total: -40.82 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -6.86 Total: -92.55 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -65.58 -0.14 -65.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.682 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds