Wall clock time and date at job start Tue Mar 31 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.52997 * 109.47056 * 190.00229 * 4 2 1 6 6 C 1.52999 * 109.47022 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.47244 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47434 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99783 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99966 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99956 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.41382 * 35.00184 * 11 10 8 13 13 C 1.52963 * 109.41407 * 154.86216 * 11 10 8 14 14 C 1.53231 * 109.40173 * 183.70517 * 13 11 10 15 15 C 1.51265 * 108.53762 * 305.37199 * 14 13 11 16 16 C 1.37878 * 120.84832 * 231.32317 * 15 14 13 17 17 N 1.31508 * 120.00385 * 0.02562 * 16 15 14 18 18 Si 1.86808 * 119.99788 * 179.97438 * 16 15 14 19 19 H 1.48499 * 109.46889 * 60.00725 * 18 16 15 20 20 H 1.48498 * 109.46750 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47025 * 300.00371 * 18 16 15 22 22 C 1.51269 * 118.30254 * 51.34994 * 15 14 13 23 23 C 1.52963 * 109.41506 * 275.14676 * 11 10 8 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 28 28 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 30 30 H 1.08999 * 109.47248 * 309.99990 * 4 2 1 31 31 H 1.09000 * 109.46941 * 70.00310 * 4 2 1 32 32 H 1.08999 * 109.46896 * 299.99976 * 5 4 2 33 33 H 1.09000 * 109.47180 * 60.00227 * 5 4 2 34 34 H 1.08999 * 109.47136 * 299.99671 * 6 5 4 35 35 H 1.09000 * 109.47088 * 60.00012 * 6 5 4 36 36 H 1.09000 * 109.47105 * 300.00363 * 7 6 5 37 37 H 1.09000 * 109.46574 * 59.99760 * 7 6 5 38 38 H 0.96997 * 120.00246 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.48042 * 303.68388 * 13 11 10 40 40 H 1.08991 * 109.47912 * 63.72859 * 13 11 10 41 41 H 1.08997 * 109.62587 * 65.08759 * 14 13 11 42 42 H 1.08997 * 109.62108 * 185.46545 * 14 13 11 43 43 H 0.96993 * 120.00457 * 179.97438 * 17 16 15 44 44 H 1.09008 * 109.62640 * 68.36224 * 22 15 14 45 45 H 1.09000 * 109.63113 * 188.74662 * 22 15 14 46 46 H 1.09001 * 109.47808 * 296.27608 * 23 11 10 47 47 H 1.08996 * 109.48034 * 56.31266 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 3.5044 -0.9554 -0.9704 6 6 4.0527 -1.7527 -2.1556 7 6 5.5619 -1.9416 -1.9887 8 6 6.1019 -2.7274 -3.1557 9 8 5.3535 -3.0992 -4.0346 10 7 7.4166 -3.0159 -3.2231 11 6 7.9417 -3.7794 -4.3579 12 1 7.3925 -3.5110 -5.2604 13 6 9.4238 -3.4523 -4.5486 14 6 9.9497 -4.1791 -5.7908 15 6 9.6506 -5.6549 -5.6472 16 6 10.6424 -6.5972 -5.8183 17 7 11.8672 -6.2173 -6.1097 18 14 10.2467 -8.4137 -5.6346 19 1 9.2119 -8.7977 -6.6281 20 1 11.4762 -9.2138 -5.8654 21 1 9.7377 -8.6732 -4.2640 22 6 8.2353 -6.0705 -5.3117 23 6 7.7731 -5.2752 -4.0861 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.6461 1.8947 0.8901 28 1 3.0851 1.3422 0.0005 29 1 1.6460 1.8948 -0.8900 30 1 1.5089 -1.7407 -1.1757 31 1 1.7975 -0.2247 -2.0628 32 1 3.9909 0.0192 -0.9324 33 1 3.7023 -1.4967 -0.0452 34 1 3.5663 -2.7273 -2.1940 35 1 3.8548 -1.2110 -3.0805 36 1 6.0480 -0.9668 -1.9504 37 1 5.7601 -2.4830 -1.0637 38 1 8.0152 -2.7182 -2.5204 39 1 9.5449 -2.3768 -4.6781 40 1 9.9836 -3.7785 -3.6722 41 1 9.4540 -3.7899 -6.6800 42 1 11.0257 -4.0273 -5.8755 43 1 12.5651 -6.8802 -6.2297 44 1 7.5808 -5.8563 -6.1566 45 1 8.2098 -7.1374 -5.0900 46 1 8.3730 -5.5572 -3.2208 47 1 6.7236 -5.4925 -3.8876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184060744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:19 Heat of formation + Delta-G solvation = -69.312394 kcal Electronic energy + Delta-G solvation = -22111.496817 eV Core-core repulsion = 18906.657091 eV Total energy + Delta-G solvation = -3204.839726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.56346 -38.07947 -36.80812 -34.45336 -33.65570 -31.62297 -29.88309 -29.61811 -27.93809 -27.24879 -25.20089 -22.66565 -21.71857 -21.41799 -20.94158 -19.85073 -19.38617 -16.82229 -16.25881 -15.96431 -15.75242 -15.44467 -15.31243 -14.96356 -14.45773 -14.17598 -13.62070 -13.24172 -12.90237 -12.73958 -12.69743 -12.61307 -12.26668 -12.13581 -12.05637 -12.04044 -11.66088 -11.43218 -11.29209 -11.13948 -11.00371 -10.78488 -10.68116 -10.63939 -10.19685 -10.01990 -9.74651 -9.48606 -8.97571 -8.83189 -8.71064 -8.47853 -8.30599 -6.10850 -4.01408 2.99286 3.29622 3.36059 3.38401 3.49882 3.72868 4.38980 4.60620 4.76086 4.79326 4.90017 5.00606 5.08497 5.15030 5.17551 5.25919 5.28688 5.36944 5.46897 5.51546 5.60016 5.62210 5.67079 5.78671 5.82245 5.90650 6.12360 6.21062 6.25635 6.48247 6.50290 6.67407 6.69090 6.71527 6.80290 6.89539 6.96828 7.06880 7.25993 7.43073 7.63849 7.71071 7.77845 7.98228 8.37760 8.63013 8.95295 9.54289 10.98825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.002535 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.710120 B =11042.948852 C =11420.951405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.020 3.980 4 C 0.053 3.947 5 C -0.116 4.116 6 C -0.102 4.102 7 C -0.140 4.140 8 C 0.505 3.495 9 O -0.547 6.547 10 N -0.726 5.726 11 C 0.153 3.847 12 H 0.077 0.923 13 C -0.114 4.114 14 C 0.013 3.987 15 C -0.489 4.489 16 C 0.076 3.924 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.274 1.274 22 C -0.009 4.009 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.394 0.606 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.006 0.994 42 H 0.060 0.940 43 H 0.265 0.735 44 H 0.020 0.980 45 H 0.025 0.975 46 H 0.051 0.949 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 12.716 12.711 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.180 4.180 8 C 0.291 3.709 9 O -0.425 6.425 10 N -0.376 5.376 11 C 0.050 3.950 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.025 4.025 15 C -0.508 4.508 16 C -0.127 4.127 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.047 4.047 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.655 12.156 12.457 23.410 hybrid contribution -0.062 -0.474 -0.206 0.521 sum -15.717 11.681 12.251 23.099 Atomic orbital electron populations 1.22382 0.87378 1.02318 1.00392 1.62003 1.07818 1.13989 1.43530 1.22454 1.01174 0.88749 1.00463 1.22177 0.96026 0.98258 0.91028 1.21626 0.94226 1.00538 0.99005 1.21275 0.93442 1.01225 0.98129 1.21670 0.97536 1.01015 0.97791 1.20647 0.82530 0.80092 0.87604 1.90685 1.57363 1.53876 1.40532 1.46450 1.08285 1.56407 1.26446 1.21027 0.95223 0.91096 0.87612 0.90499 1.21927 0.93125 0.97840 1.02353 1.19332 0.98680 0.93661 0.90804 1.20032 0.92031 0.91808 1.46966 1.24835 0.94652 0.98592 0.94572 1.69813 1.01130 1.34270 1.47600 0.86649 0.77297 0.85093 0.78997 1.19983 1.21877 1.20018 1.19597 0.96920 0.94841 0.93354 1.21889 0.98282 0.94607 1.00384 0.91293 0.95702 0.91446 0.91541 0.90910 0.95704 0.90605 0.94706 0.91940 0.91026 0.91096 0.91369 0.89326 0.89152 0.77331 0.94655 0.92740 0.97600 0.92111 0.92528 0.96169 0.95657 0.93067 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.74 16 2 N -0.55 -4.65 5.02 -251.25 -1.26 -5.92 16 3 C 0.02 0.14 9.40 60.06 0.56 0.71 16 4 C 0.05 0.46 4.96 -3.82 -0.02 0.44 16 5 C -0.12 -0.98 5.15 -26.73 -0.14 -1.12 16 6 C -0.10 -1.07 4.50 -26.73 -0.12 -1.19 16 7 C -0.14 -1.48 5.70 -27.88 -0.16 -1.63 16 8 C 0.51 7.87 7.79 -10.99 -0.09 7.79 16 9 O -0.55 -10.85 15.64 5.56 0.09 -10.76 16 10 N -0.73 -11.35 5.07 -53.84 -0.27 -11.62 16 11 C 0.15 3.02 2.35 -67.97 -0.16 2.86 16 12 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 13 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 14 C 0.01 0.32 5.96 -27.49 -0.16 0.16 16 15 C -0.49 -12.92 5.51 -98.92 -0.55 -13.47 16 16 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 17 N -0.89 -25.47 12.73 55.43 0.71 -24.76 16 18 Si 0.89 21.48 26.80 -169.99 -4.56 16.92 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.01 -0.22 5.60 -27.48 -0.15 -0.37 16 23 C -0.11 -2.40 5.50 -26.63 -0.15 -2.55 16 24 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 35 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 4.94 8.60 -40.82 -0.35 4.58 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.02 0.60 5.17 -51.93 -0.27 0.33 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -30.55 365.30 -9.36 -39.91 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.78 Total: -1.16 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.79 Total: -8.12 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.83 Total: -42.29 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.56 Total: 16.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.55 -9.36 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184060744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.403 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds