Wall clock time and date at job start Tue Mar 31 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47075 * 2 1 4 4 C 1.46499 * 119.99616 * 269.99543 * 3 2 1 5 5 C 1.50705 * 109.47324 * 269.99910 * 4 3 2 6 6 H 1.07997 * 119.99714 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00078 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46952 * 60.00742 * 9 7 5 11 11 H 1.48507 * 109.46833 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47454 * 299.99999 * 9 7 5 13 13 C 1.34767 * 120.00103 * 89.99837 * 3 2 1 14 14 O 1.21590 * 119.99947 * 179.97438 * 13 3 2 15 15 N 1.34778 * 120.00002 * 359.97438 * 13 3 2 16 16 C 1.46507 * 119.99972 * 180.02562 * 15 13 3 17 17 H 1.09002 * 109.47280 * 34.99608 * 16 15 13 18 18 C 1.53002 * 109.46688 * 274.99840 * 16 15 13 19 19 C 1.52992 * 109.47485 * 154.99904 * 16 15 13 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 16 15 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 16 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 300.00204 * 19 16 15 25 25 H 1.09002 * 109.46785 * 60.00667 * 1 2 3 26 26 H 1.09007 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47392 * 300.00118 * 1 2 3 28 28 H 1.09004 * 109.47410 * 239.99635 * 2 1 3 29 29 H 1.09008 * 109.46805 * 119.99769 * 2 1 3 30 30 H 1.08994 * 109.47366 * 30.00318 * 4 3 2 31 31 H 1.09001 * 109.46858 * 150.00383 * 4 3 2 32 32 H 0.96995 * 119.99939 * 179.97438 * 8 7 5 33 33 H 0.96993 * 120.00301 * 359.97438 * 15 13 3 34 34 H 1.09000 * 109.46986 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47596 * 299.99901 * 18 16 15 36 36 H 1.08996 * 109.47407 * 60.00295 * 18 16 15 37 37 H 1.09002 * 109.47103 * 59.99596 * 19 16 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 16 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 16 40 40 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 41 41 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 45 45 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47486 * 59.99547 * 24 19 16 47 47 H 1.09002 * 109.46716 * 299.99630 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1254 -3.6182 9 14 5.9133 2.0953 -3.4174 10 1 6.1403 0.6385 -3.5947 11 1 6.1608 2.7953 -4.7035 12 1 6.8412 2.6187 -2.3829 13 6 2.2429 2.0165 1.1671 14 8 2.6486 3.1627 1.1671 15 7 2.0178 1.3814 2.3343 16 6 2.2614 2.0723 3.6031 17 1 2.0093 3.1274 3.4966 18 6 3.7374 1.9363 3.9825 19 6 1.3938 1.4487 4.6982 20 6 1.6487 2.1698 6.0233 21 6 0.7815 1.5458 7.1185 22 6 -0.6946 1.6817 6.7397 23 6 -0.9495 0.9607 5.4146 24 6 -0.0821 1.5846 4.3187 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6752 3.5158 -4.4441 33 1 1.6938 0.4672 2.3344 34 1 3.9186 2.4499 4.9267 35 1 3.9895 0.8812 4.0891 36 1 4.3555 2.3806 3.2024 37 1 1.6459 0.3936 4.8047 38 1 1.3969 3.2250 5.9170 39 1 2.7002 2.0726 6.2934 40 1 1.0336 0.4907 7.2246 41 1 0.9628 2.0598 8.0624 42 1 -1.3125 1.2376 7.5200 43 1 -0.9468 2.7368 6.6335 44 1 -0.6973 -0.0945 5.5207 45 1 -2.0010 1.0579 5.1444 46 1 -0.2634 1.0706 3.3747 47 1 -0.3342 2.6397 4.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186327342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:42 Heat of formation + Delta-G solvation = -60.782835 kcal Electronic energy + Delta-G solvation = -23548.678700 eV Core-core repulsion = 20344.208844 eV Total energy + Delta-G solvation = -3204.469857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84472 -38.55840 -35.52627 -34.71107 -32.76418 -31.40445 -30.72889 -30.01346 -28.69985 -26.74835 -23.94973 -22.96403 -22.58789 -22.37795 -20.49739 -20.04021 -19.00318 -17.25111 -16.30796 -16.02955 -15.52758 -14.76662 -14.53359 -14.33382 -14.21186 -14.06547 -13.53571 -13.49935 -13.27152 -12.89831 -12.81109 -12.42364 -12.24076 -12.00273 -11.90849 -11.66111 -11.47689 -11.37611 -11.21032 -11.11154 -10.93544 -10.85998 -10.71548 -10.49790 -10.43448 -10.15910 -10.10403 -10.02878 -9.57327 -9.08693 -8.50661 -8.35631 -7.49190 -5.96468 -4.00542 3.36149 3.40385 3.42209 3.50056 4.11460 4.47571 4.48874 4.59017 4.61088 4.72040 4.99528 5.11805 5.18370 5.32822 5.35939 5.36918 5.38395 5.39336 5.47929 5.60664 5.65351 5.69266 5.72909 5.75571 5.85003 5.92182 5.97776 6.02968 6.03527 6.04112 6.11962 6.18534 6.25147 6.29336 6.39693 6.52928 6.55909 6.97731 7.12270 7.48535 7.67990 7.86413 8.05796 8.33891 8.87256 9.01216 9.50885 9.66970 11.11259 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.003968 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.620997 B = 7055.058245 C = 7644.366027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.262 3.738 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.702 3.298 14 O -0.588 6.588 15 N -0.752 5.752 16 C 0.166 3.834 17 H 0.084 0.916 18 C -0.165 4.165 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.388 0.612 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -7.538 19.264 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.350 5.350 4 C 0.143 3.857 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.403 3.597 14 O -0.465 6.465 15 N -0.410 5.410 16 C 0.060 3.940 17 H 0.102 0.898 18 C -0.223 4.223 19 C -0.110 4.110 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.789 -6.556 19.029 21.581 hybrid contribution 0.862 -0.676 -0.443 1.181 sum -6.927 -7.232 18.586 21.112 Atomic orbital electron populations 1.22245 0.97023 1.01144 1.02396 1.21277 0.93295 0.84731 1.02076 1.47533 1.67894 1.13057 1.06478 1.19126 0.95867 0.93423 0.77307 1.21459 0.97168 1.31584 1.06000 0.92650 1.24924 0.97708 0.95056 0.96457 1.69927 1.35644 1.33642 1.14390 0.86583 0.85051 0.78148 0.77751 1.20350 1.21244 1.20262 1.15932 0.78797 0.84702 0.80262 1.90873 1.52538 1.17069 1.86053 1.45385 1.73964 1.17075 1.04592 1.20674 0.93891 0.97561 0.81866 0.89815 1.22258 0.97029 1.01457 1.01599 1.21419 0.95076 1.00115 0.94418 1.21603 0.99863 0.99894 0.93790 1.21520 0.95031 1.00899 0.98065 1.21544 0.96347 1.00781 0.97107 1.21545 0.99466 0.99601 0.95002 1.21573 0.93931 1.01475 0.98105 0.92016 0.92410 0.93102 0.90033 0.92585 0.95186 0.93966 0.92778 0.77750 0.92082 0.93047 0.91702 0.91070 0.91681 0.91396 0.92132 0.92183 0.92429 0.92044 0.92190 0.92225 0.91707 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.82 5.89 -4.04 -0.02 1.80 16 3 N -0.61 -13.37 2.46 -180.80 -0.44 -13.81 16 4 C 0.26 7.04 5.16 -5.19 -0.03 7.02 16 5 C -0.52 -15.20 9.39 -34.44 -0.32 -15.52 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 9 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.70 15.26 8.24 -86.93 -0.72 14.54 16 14 O -0.59 -15.59 15.58 5.29 0.08 -15.51 16 15 N -0.75 -11.99 4.25 -58.67 -0.25 -12.24 16 16 C 0.17 2.31 2.16 -67.93 -0.15 2.17 16 17 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 18 C -0.16 -2.25 9.13 37.16 0.34 -1.91 16 19 C -0.09 -0.93 1.82 -90.63 -0.17 -1.10 16 20 C -0.11 -1.02 4.85 -26.73 -0.13 -1.15 16 21 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.12 -1.00 5.92 -26.70 -0.16 -1.16 16 24 C -0.11 -1.16 5.05 -26.70 -0.13 -1.29 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.06 0.77 6.36 -51.92 -0.33 0.44 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.39 5.20 6.12 -40.82 -0.25 4.95 16 34 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.71 7.44 -51.93 -0.39 0.32 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -33.23 365.63 -9.62 -42.85 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.72 Total: 1.37 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.52 Total: 0.93 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.04 Total: -52.46 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.23 -9.62 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186327342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.938 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds