Wall clock time and date at job start Tue Mar 31 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47075 * 2 1 4 4 C 1.46499 * 119.99616 * 269.99543 * 3 2 1 5 5 C 1.50705 * 109.47324 * 269.99910 * 4 3 2 6 6 H 1.07997 * 119.99714 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00078 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46952 * 60.00742 * 9 7 5 11 11 H 1.48507 * 109.46833 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47454 * 299.99999 * 9 7 5 13 13 C 1.34767 * 120.00103 * 89.99837 * 3 2 1 14 14 O 1.21590 * 119.99947 * 179.97438 * 13 3 2 15 15 N 1.34778 * 120.00002 * 359.97438 * 13 3 2 16 16 C 1.46507 * 119.99972 * 180.02562 * 15 13 3 17 17 H 1.09002 * 109.47280 * 34.99608 * 16 15 13 18 18 C 1.53002 * 109.46688 * 274.99840 * 16 15 13 19 19 C 1.52992 * 109.47485 * 154.99904 * 16 15 13 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 16 15 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 16 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 300.00204 * 19 16 15 25 25 H 1.09002 * 109.46785 * 60.00667 * 1 2 3 26 26 H 1.09007 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47392 * 300.00118 * 1 2 3 28 28 H 1.09004 * 109.47410 * 239.99635 * 2 1 3 29 29 H 1.09008 * 109.46805 * 119.99769 * 2 1 3 30 30 H 1.08994 * 109.47366 * 30.00318 * 4 3 2 31 31 H 1.09001 * 109.46858 * 150.00383 * 4 3 2 32 32 H 0.96995 * 119.99939 * 179.97438 * 8 7 5 33 33 H 0.96993 * 120.00301 * 359.97438 * 15 13 3 34 34 H 1.09000 * 109.46986 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47596 * 299.99901 * 18 16 15 36 36 H 1.08996 * 109.47407 * 60.00295 * 18 16 15 37 37 H 1.09002 * 109.47103 * 59.99596 * 19 16 15 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 16 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 16 40 40 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 41 41 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 45 45 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47486 * 59.99547 * 24 19 16 47 47 H 1.09002 * 109.46716 * 299.99630 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1254 -3.6182 9 14 5.9133 2.0953 -3.4174 10 1 6.1403 0.6385 -3.5947 11 1 6.1608 2.7953 -4.7035 12 1 6.8412 2.6187 -2.3829 13 6 2.2429 2.0165 1.1671 14 8 2.6486 3.1627 1.1671 15 7 2.0178 1.3814 2.3343 16 6 2.2614 2.0723 3.6031 17 1 2.0093 3.1274 3.4966 18 6 3.7374 1.9363 3.9825 19 6 1.3938 1.4487 4.6982 20 6 1.6487 2.1698 6.0233 21 6 0.7815 1.5458 7.1185 22 6 -0.6946 1.6817 6.7397 23 6 -0.9495 0.9607 5.4146 24 6 -0.0821 1.5846 4.3187 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6752 3.5158 -4.4441 33 1 1.6938 0.4672 2.3344 34 1 3.9186 2.4499 4.9267 35 1 3.9895 0.8812 4.0891 36 1 4.3555 2.3806 3.2024 37 1 1.6459 0.3936 4.8047 38 1 1.3969 3.2250 5.9170 39 1 2.7002 2.0726 6.2934 40 1 1.0336 0.4907 7.2246 41 1 0.9628 2.0598 8.0624 42 1 -1.3125 1.2376 7.5200 43 1 -0.9468 2.7368 6.6335 44 1 -0.6973 -0.0945 5.5207 45 1 -2.0010 1.0579 5.1444 46 1 -0.2634 1.0706 3.3747 47 1 -0.3342 2.6397 4.2121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186327342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:41 Heat of formation + Delta-G solvation = -80.370173 kcal Electronic energy + Delta-G solvation = -23549.528071 eV Core-core repulsion = 20344.208844 eV Total energy + Delta-G solvation = -3205.319227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28536 -39.65373 -37.05718 -36.15742 -34.86978 -32.59358 -31.57829 -31.53738 -29.74045 -28.68862 -25.38052 -24.53599 -23.86042 -23.24122 -21.57783 -21.07248 -20.33231 -18.87882 -18.46785 -17.54628 -16.60976 -16.38608 -16.08425 -15.64773 -15.20818 -15.02579 -14.89614 -14.61356 -14.53550 -14.34146 -14.09248 -13.72402 -13.54580 -13.24950 -13.15393 -13.01554 -12.90040 -12.67509 -12.50310 -12.42505 -12.31094 -12.17219 -11.95944 -11.92867 -11.74308 -11.69305 -11.27706 -11.03989 -10.88493 -10.82240 -10.62292 -10.03188 -9.27625 -8.19307 -6.34526 1.35996 1.40919 1.48070 1.93465 2.34656 2.44865 3.08445 3.19649 3.62969 3.85803 3.89301 4.10514 4.21808 4.30745 4.38743 4.41073 4.47101 4.54299 4.55565 4.66262 4.69124 4.69612 4.76794 4.86541 4.87966 4.98334 4.99126 5.03541 5.12672 5.19259 5.22984 5.29038 5.32078 5.34079 5.34411 5.38120 5.46906 5.53598 5.60700 5.64292 5.77255 5.87044 6.10672 6.24724 6.74933 7.27798 7.33131 7.84691 8.86790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.003968 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.620997 B = 7055.058245 C = 7644.366027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.621 5.621 4 C 0.281 3.719 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.696 3.304 14 O -0.645 6.645 15 N -0.727 5.727 16 C 0.163 3.837 17 H 0.052 0.948 18 C -0.159 4.159 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.023 0.977 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.405 0.595 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.021 0.979 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 -10.279 21.244 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.356 5.356 4 C 0.159 3.841 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.397 3.603 14 O -0.527 6.527 15 N -0.386 5.386 16 C 0.057 3.943 17 H 0.070 0.930 18 C -0.217 4.217 19 C -0.097 4.097 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.041 0.959 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.242 0.758 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.706 -9.372 21.055 24.301 hybrid contribution 0.773 0.201 -1.024 1.299 sum -6.934 -9.171 20.030 23.095 Atomic orbital electron populations 1.22155 0.94637 1.03411 1.01561 1.21612 0.95209 0.81669 1.03362 1.47420 1.68203 1.14983 1.04956 1.18545 0.95040 0.91114 0.79431 1.21716 0.98054 1.31904 1.06378 0.93149 1.25858 1.02393 0.94515 0.96417 1.70050 1.37787 1.34257 1.14809 0.85476 0.79021 0.79038 0.77292 1.18382 1.20218 1.20557 1.16169 0.78475 0.84180 0.81470 1.90827 1.55062 1.19807 1.87026 1.45157 1.72459 1.17502 1.03444 1.20870 0.95279 0.96196 0.81910 0.93018 1.22204 0.95645 1.02604 1.01277 1.21344 0.94088 1.00884 0.93360 1.21616 1.00788 0.99269 0.93470 1.21501 0.94384 1.01479 0.97704 1.21562 0.96805 1.00355 0.97158 1.21513 0.99095 1.00097 0.94404 1.21566 0.94385 1.00438 0.98763 0.94258 0.88471 0.92573 0.90805 0.89201 0.95930 0.98886 0.92435 0.75767 0.89583 0.91108 0.95967 0.89078 0.92801 0.90608 0.91049 0.91219 0.91047 0.92903 0.90925 0.92001 0.92388 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.31 5.89 86.38 0.51 3.82 16 3 N -0.62 -27.78 2.46 -844.19 -2.07 -29.86 16 4 C 0.28 15.85 5.16 85.63 0.44 16.29 16 5 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 9 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.70 31.31 8.24 179.06 1.48 32.79 16 14 O -0.65 -36.39 15.58 -4.00 -0.06 -36.45 16 15 N -0.73 -22.94 4.25 -457.81 -1.95 -24.89 16 16 C 0.16 4.50 2.16 44.99 0.10 4.59 16 17 H 0.05 1.79 7.58 -2.39 -0.02 1.77 16 18 C -0.16 -4.22 9.13 71.98 0.66 -3.56 16 19 C -0.08 -1.44 1.82 -10.80 -0.02 -1.46 16 20 C -0.11 -1.80 4.85 30.59 0.15 -1.65 16 21 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 22 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 23 C -0.11 -1.62 5.92 30.61 0.18 -1.44 16 24 C -0.11 -2.17 5.05 30.61 0.15 -2.02 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.48 8.07 -2.38 -0.02 2.46 16 29 H 0.09 2.23 6.36 -2.38 -0.02 2.21 16 30 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 31 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.40 9.96 6.12 -92.71 -0.57 9.40 16 34 H 0.09 1.83 6.43 -2.39 -0.02 1.81 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.10 6.43 -2.39 -0.02 1.08 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 1.17 7.44 -2.39 -0.02 1.15 16 47 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.93 365.63 4.03 -72.91 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.35 Total: 17.47 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.45 Total: 10.05 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -3.73 Total: -112.19 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.06 Total: -36.45 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.93 4.03 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186327342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.465 kcal (2) G-P(sol) polarization free energy of solvation -76.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds