Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47246 * 2 1 4 4 C 1.46499 * 119.99854 * 269.99397 * 3 2 1 5 5 C 1.50694 * 109.47711 * 270.00352 * 4 3 2 6 6 H 1.08006 * 119.99502 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99978 * 179.97438 * 7 5 4 10 10 H 1.48489 * 109.47252 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46570 * 120.00473 * 9 7 5 12 12 H 1.48501 * 109.47032 * 239.99942 * 9 7 5 13 13 C 1.34775 * 119.99857 * 89.99853 * 3 2 1 14 14 O 1.21591 * 119.99680 * 179.97438 * 13 3 2 15 15 N 1.34770 * 120.00247 * 0.02562 * 13 3 2 16 16 C 1.46500 * 119.99955 * 180.02562 * 15 13 3 17 17 H 1.09000 * 109.47175 * 324.99716 * 16 15 13 18 18 C 1.52996 * 109.47368 * 84.99591 * 16 15 13 19 19 C 1.52997 * 109.47204 * 204.99611 * 16 15 13 20 20 C 1.53002 * 109.47415 * 180.02562 * 19 16 15 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 16 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 C 1.52997 * 109.47232 * 299.99976 * 19 16 15 25 25 H 1.08999 * 109.47158 * 60.00055 * 1 2 3 26 26 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46952 * 300.00378 * 1 2 3 28 28 H 1.08996 * 109.47337 * 239.99533 * 2 1 3 29 29 H 1.09005 * 109.46827 * 120.00186 * 2 1 3 30 30 H 1.09005 * 109.46696 * 30.00488 * 4 3 2 31 31 H 1.09000 * 109.47229 * 149.99706 * 4 3 2 32 32 H 0.97005 * 120.00724 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99935 * 359.97438 * 15 13 3 34 34 H 1.09001 * 109.47372 * 179.97438 * 18 16 15 35 35 H 1.08996 * 109.47261 * 300.00328 * 18 16 15 36 36 H 1.09004 * 109.47368 * 59.99943 * 18 16 15 37 37 H 1.09002 * 109.47497 * 59.99751 * 19 16 15 38 38 H 1.08992 * 109.47063 * 59.99950 * 20 19 16 39 39 H 1.09004 * 109.46733 * 299.99664 * 20 19 16 40 40 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 41 41 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 44 44 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 46 46 H 1.09002 * 109.47153 * 299.99992 * 24 19 16 47 47 H 1.09001 * 109.47289 * 60.00075 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1492 2.3894 -2.8779 8 7 3.3493 3.1255 -3.6181 9 14 5.9137 2.0964 -3.4168 10 1 6.6012 1.2412 -2.4163 11 1 5.9215 1.4168 -4.7371 12 1 6.6206 3.3978 -3.5257 13 6 2.2429 2.0165 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0188 1.3811 2.3344 16 6 2.2624 2.0719 3.6031 17 1 3.1212 2.7347 3.4968 18 6 1.0284 2.8932 3.9818 19 6 2.5454 1.0420 4.6985 20 6 2.7993 1.7634 6.0236 21 6 3.0829 0.7334 7.1189 22 6 1.8780 -0.1976 7.2678 23 6 1.6241 -0.9191 5.9427 24 6 1.3399 0.1117 4.8476 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6753 3.5160 -4.4441 33 1 1.6954 0.4666 2.3344 34 1 1.2094 3.4068 4.9260 35 1 0.8267 3.6269 3.2015 36 1 0.1694 2.2305 4.0881 37 1 3.4246 0.4568 4.4287 38 1 1.9198 2.3481 6.2932 39 1 3.6580 2.4263 5.9177 40 1 3.9625 0.1489 6.8491 41 1 3.2633 1.2473 8.0631 42 1 2.0797 -0.9312 8.0483 43 1 0.9984 0.3868 7.5376 44 1 0.7654 -1.5821 6.0486 45 1 2.5037 -1.5035 5.6729 46 1 0.4607 0.6968 5.1174 47 1 1.1586 -0.4023 3.9037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186382893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = -58.023415 kcal Electronic energy + Delta-G solvation = -23541.898402 eV Core-core repulsion = 20337.548203 eV Total energy + Delta-G solvation = -3204.350199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93573 -38.62135 -35.50593 -34.70886 -32.76522 -31.35415 -30.78517 -30.01687 -28.52350 -26.76730 -24.19511 -22.98299 -22.95376 -22.38785 -20.76872 -19.22368 -19.09898 -17.31283 -16.30883 -15.89530 -15.39254 -14.84944 -14.73832 -14.41315 -14.34403 -14.28025 -13.74186 -13.46001 -13.12625 -12.91405 -12.44564 -12.41465 -12.28620 -12.16357 -11.98310 -11.83464 -11.63237 -11.29802 -11.13624 -11.05042 -10.88541 -10.84766 -10.70401 -10.49689 -10.46040 -10.22299 -10.08364 -9.99146 -9.54542 -9.09351 -8.51490 -8.36539 -7.49463 -5.96832 -4.00785 3.33879 3.41065 3.43743 3.50937 4.10725 4.47095 4.52612 4.55715 4.58076 4.67496 5.00122 5.10959 5.13192 5.31598 5.34043 5.35174 5.36705 5.37833 5.46098 5.56303 5.59199 5.67879 5.70179 5.75605 5.83786 5.89828 5.98194 5.99788 6.01895 6.03650 6.09692 6.13948 6.25474 6.28056 6.32011 6.53210 6.54939 6.97573 7.12235 7.48637 7.67907 7.86530 8.05469 8.33739 8.86885 9.01551 9.50640 9.66844 11.10928 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.003970 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.520560 B = 7050.692433 C = 7394.806742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.614 5.614 4 C 0.262 3.738 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.701 3.299 14 O -0.588 6.588 15 N -0.753 5.753 16 C 0.165 3.835 17 H 0.085 0.915 18 C -0.164 4.164 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.261 0.739 33 H 0.388 0.612 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -8.988 19.749 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.350 5.350 4 C 0.142 3.858 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.402 3.598 14 O -0.465 6.465 15 N -0.412 5.412 16 C 0.060 3.940 17 H 0.103 0.897 18 C -0.223 4.223 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.154 4.154 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.762 -8.017 19.522 21.876 hybrid contribution 0.809 -0.643 -0.467 1.134 sum -4.952 -8.660 19.055 21.508 Atomic orbital electron populations 1.22242 0.97015 1.01157 1.02422 1.21276 0.93310 0.84737 1.02058 1.47537 1.67883 1.13062 1.06481 1.19139 0.95915 0.93438 0.77306 1.21534 0.97153 1.31457 1.05941 0.92534 1.24927 0.97727 0.95063 0.96475 1.69944 1.35521 1.33747 1.14366 0.86465 0.84878 0.77987 0.78205 1.19898 1.21059 1.20939 1.15953 0.78769 0.84754 0.80304 1.90871 1.52593 1.17008 1.86063 1.45456 1.74056 1.17132 1.04574 1.20640 0.98363 0.93205 0.81836 0.89740 1.22289 0.98155 1.00376 1.01469 1.21419 0.98722 0.96474 0.94612 1.21598 1.02057 0.97696 0.93782 1.21527 0.98151 0.97423 0.98530 1.21531 0.98458 0.98468 0.97195 1.21543 1.01385 0.97715 0.95034 1.21655 0.98300 0.97053 0.98383 0.91982 0.92390 0.93116 0.89992 0.92650 0.95167 0.93947 0.92891 0.77623 0.92084 0.92026 0.92732 0.90746 0.91340 0.91688 0.92061 0.92150 0.92398 0.92095 0.92202 0.92060 0.91319 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.84 5.89 -4.04 -0.02 1.81 16 3 N -0.61 -13.46 2.46 -180.81 -0.44 -13.91 16 4 C 0.26 7.04 5.16 -5.20 -0.03 7.01 16 5 C -0.52 -15.19 9.38 -34.45 -0.32 -15.51 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.70 15.38 8.24 -86.93 -0.72 14.67 16 14 O -0.59 -15.65 15.58 5.29 0.08 -15.57 16 15 N -0.75 -12.17 4.86 -58.68 -0.29 -12.45 16 16 C 0.17 2.32 2.40 -67.93 -0.16 2.16 16 17 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 18 C -0.16 -2.12 8.78 37.16 0.33 -1.79 16 19 C -0.09 -0.98 2.18 -90.62 -0.20 -1.18 16 20 C -0.11 -1.04 4.85 -26.73 -0.13 -1.16 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.12 -0.94 5.93 -26.71 -0.16 -1.10 16 24 C -0.12 -1.05 4.68 -26.71 -0.12 -1.18 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.39 5.28 4.60 -40.82 -0.19 5.10 16 34 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 47 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -33.38 360.23 -9.50 -42.88 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.43 Total: 1.45 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.57 Total: 1.25 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.01 Total: -52.76 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.38 -9.50 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186382893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.146 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds