Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46916 * 2 1 4 4 C 1.34779 * 120.00041 * 180.02562 * 3 2 1 5 5 O 1.21593 * 119.99741 * 4.97757 * 4 3 2 6 6 N 1.34773 * 120.00090 * 184.98221 * 4 3 2 7 7 C 1.46504 * 120.00050 * 354.71412 * 6 4 3 8 8 C 1.50694 * 109.46971 * 89.99999 * 7 6 4 9 9 H 1.07993 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99809 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00212 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00168 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46986 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47344 * 120.00273 * 12 10 8 15 15 H 1.48503 * 109.47260 * 240.00345 * 12 10 8 16 16 C 1.46503 * 120.00089 * 174.71598 * 6 4 3 17 17 C 1.53015 * 109.47170 * 64.82463 * 16 6 4 18 18 C 1.52994 * 109.45774 * 164.04655 * 17 16 6 19 19 C 1.52983 * 109.51129 * 315.98829 * 18 17 16 20 20 C 1.53000 * 109.46705 * 112.93629 * 19 18 17 21 21 C 1.53002 * 109.43559 * 284.03943 * 20 19 18 22 22 C 1.52986 * 109.48325 * 75.96608 * 21 20 19 23 23 C 1.53002 * 109.50277 * 247.06786 * 22 21 20 24 24 H 1.08997 * 109.47266 * 60.00286 * 1 2 3 25 25 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46988 * 299.99695 * 1 2 3 27 27 H 1.08998 * 109.47316 * 240.00170 * 2 1 3 28 28 H 1.08997 * 109.47266 * 119.99714 * 2 1 3 29 29 H 0.96997 * 120.00142 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47266 * 210.00188 * 7 6 4 31 31 H 1.08997 * 109.46875 * 329.99855 * 7 6 4 32 32 H 0.96999 * 120.00488 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.47379 * 184.82686 * 16 6 4 34 34 H 1.09007 * 109.46926 * 284.04390 * 17 16 6 35 35 H 1.08997 * 109.47193 * 44.05209 * 17 16 6 36 36 H 1.09002 * 109.45848 * 195.97560 * 18 17 16 37 37 H 1.08999 * 109.45338 * 75.99669 * 18 17 16 38 38 H 1.09001 * 109.46898 * 352.93530 * 19 18 17 39 39 H 1.08994 * 109.46533 * 232.93808 * 19 18 17 40 40 H 1.09000 * 109.47565 * 164.05510 * 20 19 18 41 41 H 1.09001 * 109.48760 * 44.03533 * 20 19 18 42 42 H 1.09001 * 109.47227 * 315.96220 * 21 20 19 43 43 H 1.08998 * 109.46986 * 195.96363 * 21 20 19 44 44 H 1.08992 * 109.46922 * 127.05541 * 22 21 20 45 45 H 1.09004 * 109.46750 * 7.07325 * 22 21 20 46 46 H 1.09001 * 109.47169 * 284.01034 * 23 22 21 47 47 H 1.09000 * 109.47267 * 164.01195 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1327 0.7073 -0.0924 6 7 3.7934 2.8939 0.1008 7 6 2.8454 4.0109 0.0949 8 6 2.4201 4.3163 1.5080 9 1 2.8166 3.7366 2.3284 10 6 1.5257 5.3364 1.7535 11 7 1.0432 6.0426 0.7544 12 14 0.9989 5.7154 3.5052 13 1 1.6798 4.7834 4.4394 14 1 1.3696 7.1133 3.8420 15 1 -0.4719 5.5504 3.6265 16 6 5.2306 3.1535 0.2169 17 6 5.9340 2.7121 -1.0683 18 6 7.3331 3.3291 -1.1212 19 6 7.2592 4.7993 -0.7049 20 6 7.9911 4.9901 0.6251 21 6 7.1217 4.4567 1.7656 22 6 7.1719 2.9276 1.7733 23 6 5.7962 2.3696 1.4030 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1185 -0.0004 30 1 3.3222 4.8898 -0.3390 31 1 1.9710 3.7422 -0.4977 32 1 0.4136 6.7601 0.9270 33 1 5.3958 4.2194 0.3739 34 1 6.0153 1.6252 -1.0831 35 1 5.3572 3.0453 -1.9310 36 1 7.7231 3.2581 -2.1365 37 1 7.9928 2.7914 -0.4402 38 1 6.2156 5.0926 -0.5908 39 1 7.7288 5.4175 -1.4700 40 1 8.1872 6.0506 0.7832 41 1 8.9349 4.4453 0.6022 42 1 6.0925 4.7857 1.6225 43 1 7.4959 4.8371 2.7161 44 1 7.4500 2.5782 2.7675 45 1 7.9100 2.5847 1.0482 46 1 5.1239 2.4651 2.2556 47 1 5.8916 1.3183 1.1315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202544437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -40.216071 kcal Electronic energy + Delta-G solvation = -24484.251616 eV Core-core repulsion = 21280.673601 eV Total energy + Delta-G solvation = -3203.578015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93674 -38.22411 -34.95988 -34.45810 -32.71445 -32.44279 -31.48597 -29.45133 -27.22439 -25.49333 -25.37578 -23.11091 -22.22581 -21.55039 -20.34561 -19.76198 -18.69788 -16.74961 -16.56659 -16.00856 -14.93200 -14.90450 -14.63069 -14.45123 -13.79081 -13.77158 -13.61806 -13.54955 -12.90820 -12.76737 -12.44970 -12.27692 -12.12376 -11.73754 -11.50662 -11.41358 -11.29247 -11.16420 -11.01278 -10.94599 -10.76366 -10.65242 -10.55558 -10.41336 -10.24130 -10.01031 -9.70067 -9.56817 -9.28377 -8.90716 -8.56702 -8.31144 -7.44465 -6.16876 -4.24522 3.20772 3.29938 3.34547 3.63609 4.13799 4.33213 4.84260 4.97506 5.15174 5.16822 5.20491 5.38726 5.41870 5.44866 5.53130 5.62532 5.63121 5.68960 5.73819 5.80858 5.96461 6.07547 6.15834 6.23359 6.25685 6.28542 6.29906 6.36812 6.37388 6.43002 6.47582 6.52877 6.71055 6.77897 6.80636 6.88421 6.97175 6.99838 7.20173 7.34029 7.60747 7.79390 8.03821 8.09066 8.74881 9.00336 9.43216 9.58377 10.88634 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.007672 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.252504 B = 3648.568397 C = 5239.443168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 N -0.747 5.747 4 C 0.708 3.292 5 O -0.620 6.620 6 N -0.615 5.615 7 C 0.242 3.758 8 C -0.532 4.532 9 H 0.061 0.939 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.160 3.840 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.407 0.593 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -4.744 -1.802 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 N -0.405 5.405 4 C 0.410 3.590 5 O -0.502 6.502 6 N -0.349 5.349 7 C 0.121 3.879 8 C -0.571 4.571 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.057 3.943 17 C -0.168 4.168 18 C -0.160 4.160 19 C -0.170 4.170 20 C -0.153 4.153 21 C -0.172 4.172 22 C -0.159 4.159 23 C -0.166 4.166 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.244 0.756 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.254 -5.236 -1.898 9.145 hybrid contribution -0.859 0.775 1.011 1.536 sum 6.395 -4.461 -0.887 7.847 Atomic orbital electron populations 1.21988 0.95205 1.02181 1.02748 1.20941 0.93284 0.83363 1.01132 1.45316 1.06361 1.08357 1.80506 1.15876 0.82208 0.83435 0.77492 1.90747 1.55144 1.44198 1.60118 1.47536 1.06925 1.05205 1.75212 1.19278 0.87449 0.84122 0.97047 1.21595 1.25824 1.16596 0.93036 0.92030 1.24951 0.95956 0.95758 0.97218 1.69934 1.31219 1.21223 1.30700 0.86507 0.78365 0.78249 0.84763 1.19719 1.20919 1.20956 1.21291 0.78928 1.00520 0.93605 1.22038 0.95021 1.01842 0.97916 1.21821 0.97779 0.95742 1.00643 1.21865 1.01772 0.96644 0.96673 1.21678 0.98257 1.00301 0.95032 1.21888 1.01542 0.95925 0.97811 1.21813 0.98044 0.95314 1.00713 1.21983 0.95554 1.00931 0.98113 0.92184 0.91528 0.91873 0.92619 0.92655 0.75611 0.94813 0.95382 0.92670 0.87747 0.90602 0.92686 0.92852 0.91124 0.90471 0.92726 0.92594 0.92322 0.89979 0.92734 0.92897 0.91347 0.92173 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.03 37.15 0.37 -1.71 16 2 C 0.14 2.21 6.40 -4.04 -0.03 2.18 16 3 N -0.75 -14.53 5.42 -65.23 -0.35 -14.89 16 4 C 0.71 15.36 7.67 -86.92 -0.67 14.69 16 5 O -0.62 -14.21 13.07 5.28 0.07 -14.14 16 6 N -0.62 -13.15 2.41 -173.16 -0.42 -13.56 16 7 C 0.24 5.70 4.80 -5.19 -0.02 5.68 16 8 C -0.53 -13.60 9.38 -34.44 -0.32 -13.92 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16 12 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.16 3.01 1.94 -67.92 -0.13 2.88 16 17 C -0.13 -2.22 4.71 -26.73 -0.13 -2.34 16 18 C -0.12 -1.69 5.48 -26.74 -0.15 -1.84 16 19 C -0.13 -1.79 5.47 -26.74 -0.15 -1.94 16 20 C -0.12 -1.45 5.59 -26.73 -0.15 -1.60 16 21 C -0.13 -1.93 5.47 -26.74 -0.15 -2.07 16 22 C -0.12 -1.78 5.48 -26.74 -0.15 -1.93 16 23 C -0.13 -2.31 4.50 -26.73 -0.12 -2.43 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.41 8.11 6.28 -40.82 -0.26 7.85 16 30 H 0.03 0.84 7.96 -51.93 -0.41 0.43 16 31 H 0.03 0.69 6.52 -51.93 -0.34 0.35 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.11 1.98 2.52 -51.93 -0.13 1.85 16 34 H 0.08 1.42 6.58 -51.93 -0.34 1.08 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.94 4.69 -51.93 -0.24 0.70 16 38 H 0.08 1.21 5.47 -51.93 -0.28 0.92 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 42 H 0.08 1.38 5.47 -51.93 -0.28 1.10 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.93 4.69 -51.93 -0.24 0.69 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.50 6.34 -51.93 -0.33 1.18 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -27.86 345.24 -9.53 -37.39 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.87 Total: 10.77 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.88 Total: -2.80 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.03 Total: -51.88 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.86 -9.53 -37.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202544437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.824 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds