Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47222 * 2 1 4 4 C 1.53004 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47228 * 175.27535 * 4 3 2 6 6 H 1.09000 * 109.46638 * 56.05182 * 5 4 3 7 7 O 1.42898 * 109.46910 * 296.05848 * 5 4 3 8 8 C 1.42894 * 113.99961 * 139.50561 * 7 5 4 9 9 C 1.52999 * 109.47457 * 184.46061 * 8 7 5 10 10 C 1.52997 * 109.47567 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47363 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99833 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00130 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99988 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00154 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46720 * 89.99902 * 15 13 11 17 17 H 1.48500 * 109.47127 * 209.99823 * 15 13 11 18 18 H 1.48494 * 109.46967 * 330.00052 * 15 13 11 19 19 C 1.52997 * 109.47066 * 176.05513 * 5 4 3 20 20 C 1.52999 * 109.47165 * 299.13205 * 19 5 4 21 21 C 1.52997 * 109.47165 * 179.97438 * 20 19 5 22 22 C 1.53003 * 109.47146 * 60.00516 * 21 20 19 23 23 C 1.52999 * 109.46667 * 299.99789 * 22 21 20 24 24 C 1.52998 * 109.46828 * 179.13645 * 19 5 4 25 25 H 1.08999 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46450 * 299.99585 * 1 2 3 27 27 H 1.08997 * 109.47201 * 59.99758 * 1 2 3 28 28 H 1.09007 * 109.47006 * 239.99902 * 2 1 3 29 29 H 1.08997 * 109.47201 * 120.00242 * 2 1 3 30 30 H 1.08997 * 109.47559 * 60.00428 * 3 2 1 31 31 H 1.09002 * 109.47016 * 299.99787 * 3 2 1 32 32 H 1.09002 * 109.47165 * 295.27426 * 4 3 2 33 33 H 1.08999 * 109.47079 * 55.27669 * 4 3 2 34 34 H 1.09003 * 109.47174 * 304.45766 * 8 7 5 35 35 H 1.09003 * 109.47627 * 64.45694 * 8 7 5 36 36 H 1.09003 * 109.46688 * 300.00002 * 9 8 7 37 37 H 1.09003 * 109.47002 * 59.99250 * 9 8 7 38 38 H 1.09003 * 109.47157 * 299.99762 * 10 9 8 39 39 H 1.08997 * 109.46890 * 59.99861 * 10 9 8 40 40 H 0.97000 * 120.00116 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.47109 * 59.13381 * 19 5 4 42 42 H 1.09000 * 109.47250 * 300.00089 * 20 19 5 43 43 H 1.08999 * 109.47512 * 60.00173 * 20 19 5 44 44 H 1.08992 * 109.47682 * 300.00059 * 21 20 19 45 45 H 1.09003 * 109.47072 * 179.97438 * 21 20 19 46 46 H 1.08993 * 109.47348 * 180.02562 * 22 21 20 47 47 H 1.09001 * 109.47104 * 59.99371 * 22 21 20 48 48 H 1.09000 * 109.47250 * 300.00133 * 23 22 21 49 49 H 1.08999 * 109.47512 * 180.02562 * 23 22 21 50 50 H 1.09003 * 109.46845 * 299.99589 * 24 19 5 51 51 H 1.08991 * 109.47590 * 59.99848 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8801 -0.1195 6 1 3.6605 3.4821 0.6865 7 8 3.6804 3.4247 -1.3787 8 6 3.2491 4.7854 -1.3128 9 6 2.7428 5.2272 -2.6873 10 6 2.2805 6.6839 -2.6166 11 6 1.7824 7.1192 -3.9707 12 1 1.7941 6.4260 -4.7988 13 6 1.3109 8.4020 -4.1522 14 7 0.8758 8.7817 -5.3338 15 14 1.2901 9.6008 -2.7197 16 1 2.5747 10.3448 -2.6783 17 1 0.1686 10.5588 -2.8923 18 1 1.1106 8.8519 -1.4501 19 6 5.6069 2.8893 -0.0213 20 6 6.0341 2.3261 1.3356 21 6 7.5609 2.3348 1.4335 22 6 8.0729 3.7697 1.2929 23 6 7.6457 4.3329 -0.0640 24 6 6.1182 4.3244 -0.1617 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9338 1.0035 0.9284 33 1 3.9330 0.8571 -0.8455 34 1 2.4447 4.8767 -0.5828 35 1 4.0851 5.4175 -1.0131 36 1 3.5472 5.1359 -3.4173 37 1 1.9069 4.5951 -2.9870 38 1 1.4760 6.7748 -1.8868 39 1 3.1162 7.3162 -2.3169 40 1 0.5444 9.6843 -5.4615 41 1 6.0259 2.2746 -0.8180 42 1 5.6151 2.9408 2.1323 43 1 5.6698 1.3037 1.4358 44 1 7.9796 1.7199 0.6369 45 1 7.8652 1.9340 2.4004 46 1 9.1606 3.7759 1.3622 47 1 7.6541 4.3846 2.0896 48 1 8.0643 3.7180 -0.8607 49 1 8.0107 5.3550 -0.1645 50 1 5.8139 4.7256 -1.1284 51 1 5.6992 4.9390 0.6349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = -114.261546 kcal Electronic energy + Delta-G solvation = -23159.470462 eV Core-core repulsion = 20056.221938 eV Total energy + Delta-G solvation = -3103.248524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.62295 -37.27280 -35.63357 -33.96540 -32.52830 -31.39131 -30.81980 -29.85536 -27.24786 -25.47595 -23.08382 -22.70731 -22.37989 -20.99622 -20.70623 -20.06552 -19.62085 -16.88368 -16.37075 -16.20361 -15.27411 -14.91974 -14.50967 -14.33923 -14.19495 -14.09302 -13.92327 -13.68717 -13.18661 -12.91505 -12.69162 -12.51044 -12.35528 -12.30662 -11.86227 -11.68210 -11.65274 -11.27095 -11.26035 -11.10154 -10.98673 -10.88694 -10.79941 -10.67351 -10.54327 -10.43493 -10.29509 -10.05796 -9.97163 -9.74904 -9.61273 -9.17404 -8.97703 -8.52663 -6.02798 -4.00819 3.31020 3.38286 3.41656 3.94828 4.45340 4.45990 4.62234 4.64596 4.79425 4.92097 5.01011 5.07602 5.14190 5.23729 5.27077 5.30880 5.33417 5.38688 5.41905 5.49148 5.52169 5.55978 5.65868 5.66843 5.70807 5.77853 5.82709 5.87772 5.92500 5.93404 5.99435 6.00765 6.05506 6.07767 6.10099 6.17417 6.21573 6.27833 6.34088 6.38401 6.42672 6.56777 6.60708 6.91014 7.30792 7.43373 7.62234 7.81743 8.56262 9.02782 9.59360 11.10752 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004310 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.362963 B = 6495.625900 C = 8536.547284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.120 4.120 5 C 0.093 3.907 6 H 0.056 0.944 7 O -0.377 6.377 8 C 0.057 3.943 9 C -0.100 4.100 10 C -0.011 4.011 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -16.073 16.598 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.157 4.157 5 C 0.034 3.966 6 H 0.074 0.926 7 O -0.296 6.296 8 C -0.019 4.019 9 C -0.137 4.137 10 C -0.048 4.048 11 C -0.557 4.557 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.121 4.121 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.989 -16.020 16.327 24.960 hybrid contribution -0.056 0.968 0.886 1.314 sum 9.933 -15.052 17.213 24.930 Atomic orbital electron populations 1.21781 0.96027 1.01253 1.02037 1.21511 0.95803 0.97109 1.01542 1.21596 0.95100 0.96551 1.02633 1.21816 0.95967 0.95842 1.02075 1.22095 0.92921 0.94542 0.87014 0.92574 1.87924 1.84899 1.27494 1.29302 1.22932 0.97309 0.81761 0.99925 1.21440 1.00512 0.98307 0.93466 1.19513 0.95812 0.91388 0.98106 1.21117 1.41341 0.98172 0.95040 0.90919 1.25024 0.94767 0.98153 0.95541 1.69917 1.43156 1.18888 1.22318 0.86785 0.77811 0.81123 0.83611 1.20269 1.21351 1.19069 1.21608 0.95550 0.97242 0.97664 1.21629 0.95687 1.00901 0.96999 1.21514 0.95768 0.96926 1.01314 1.21546 1.00027 0.96349 0.97811 1.21532 0.96137 1.00819 0.97124 1.21688 0.95211 0.96233 1.02543 0.93086 0.92926 0.92447 0.92104 0.92560 0.92563 0.90807 0.91071 0.91288 0.94200 0.93538 0.92104 0.92138 0.96643 0.97051 0.92745 0.90599 0.92136 0.91699 0.92058 0.92319 0.92387 0.92193 0.92048 0.92103 0.90717 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.35 5.16 -26.73 -0.14 -1.49 16 4 C -0.12 -1.28 4.70 -26.72 -0.13 -1.40 16 5 C 0.09 1.14 1.87 -26.73 -0.05 1.09 16 6 H 0.06 0.69 7.62 -51.93 -0.40 0.29 16 7 O -0.38 -5.97 9.01 -35.23 -0.32 -6.28 16 8 C 0.06 0.97 5.28 37.16 0.20 1.16 16 9 C -0.10 -2.07 5.52 -26.73 -0.15 -2.21 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 12 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 15 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 19 C -0.10 -1.12 1.98 -90.62 -0.18 -1.30 16 20 C -0.11 -1.03 4.88 -26.73 -0.13 -1.16 16 21 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 23 C -0.12 -1.21 5.92 -26.70 -0.16 -1.37 16 24 C -0.12 -1.40 4.08 -26.70 -0.11 -1.51 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 32 H 0.07 0.64 6.25 -51.93 -0.32 0.31 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 35 H 0.05 0.76 5.89 -51.93 -0.31 0.45 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.53 6.36 -51.93 -0.33 0.20 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.03 6.22 -51.93 -0.32 0.71 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -30.22 383.11 -10.39 -40.61 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -10.46 Total: -2.99 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -1.49 Total: -26.88 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.77 Total: -27.46 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.32 Total: -6.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.22 -10.39 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.655 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds