Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46817 * 2 1 4 4 C 1.53004 * 109.46454 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46831 * 179.72346 * 4 3 2 6 6 H 1.09004 * 109.46862 * 305.90037 * 5 4 3 7 7 O 1.42901 * 109.46952 * 65.89825 * 5 4 3 8 8 C 1.42895 * 114.00405 * 259.28774 * 7 5 4 9 9 C 1.52998 * 109.47096 * 174.84524 * 8 7 5 10 10 C 1.53003 * 109.46870 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.46930 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00869 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00088 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00531 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99850 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47316 * 89.99943 * 15 13 11 17 17 H 1.48496 * 109.46902 * 209.99810 * 15 13 11 18 18 H 1.48498 * 109.47228 * 329.99804 * 15 13 11 19 19 C 1.53000 * 109.46974 * 185.90424 * 5 4 3 20 20 C 1.52999 * 109.46774 * 299.99495 * 19 5 4 21 21 C 1.53000 * 109.46774 * 179.97438 * 20 19 5 22 22 C 1.52998 * 109.47028 * 60.00457 * 21 20 19 23 23 C 1.52995 * 109.47351 * 299.99778 * 22 21 20 24 24 C 1.52997 * 109.46671 * 179.97438 * 19 5 4 25 25 H 1.09000 * 109.47201 * 59.99606 * 1 2 3 26 26 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46763 * 299.99903 * 1 2 3 28 28 H 1.08999 * 109.46682 * 119.99603 * 2 1 3 29 29 H 1.09002 * 109.46763 * 240.00097 * 2 1 3 30 30 H 1.08999 * 109.47170 * 299.99303 * 3 2 1 31 31 H 1.08994 * 109.47613 * 60.00283 * 3 2 1 32 32 H 1.09002 * 109.47380 * 299.71927 * 4 3 2 33 33 H 1.09001 * 109.47368 * 59.72572 * 4 3 2 34 34 H 1.09000 * 109.47237 * 294.85097 * 8 7 5 35 35 H 1.09004 * 109.46865 * 54.84682 * 8 7 5 36 36 H 1.08992 * 109.47263 * 299.99800 * 9 8 7 37 37 H 1.08996 * 109.46864 * 60.00886 * 9 8 7 38 38 H 1.09007 * 109.47041 * 299.99878 * 10 9 8 39 39 H 1.08997 * 109.47740 * 59.99875 * 10 9 8 40 40 H 0.96996 * 120.00504 * 180.02562 * 14 13 11 41 41 H 1.08994 * 109.47088 * 59.99763 * 19 5 4 42 42 H 1.08994 * 109.47532 * 299.99996 * 20 19 5 43 43 H 1.09003 * 109.46879 * 60.00687 * 20 19 5 44 44 H 1.08996 * 109.47575 * 300.00083 * 21 20 19 45 45 H 1.09004 * 109.47010 * 180.02562 * 21 20 19 46 46 H 1.09005 * 109.47388 * 179.97438 * 22 21 20 47 47 H 1.09003 * 109.47095 * 60.00101 * 22 21 20 48 48 H 1.09003 * 109.47285 * 300.00207 * 23 22 21 49 49 H 1.08994 * 109.47640 * 180.02562 * 23 22 21 50 50 H 1.08993 * 109.47860 * 299.99718 * 24 19 5 51 51 H 1.09003 * 109.47181 * 60.00267 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 -0.0076 6 1 3.6327 3.4245 -0.8424 7 8 3.7207 3.5232 1.2194 8 6 2.5778 4.3750 1.1186 9 6 2.2089 4.9000 2.5075 10 6 0.9848 5.8115 2.3996 11 6 0.6219 6.3292 3.7675 12 1 1.2055 6.0370 4.6280 13 6 -0.4555 7.1759 3.9207 14 7 -0.7726 7.6273 5.1146 15 14 -1.4648 7.6819 2.4325 16 1 -2.5718 6.7126 2.2323 17 1 -2.0282 9.0379 2.6544 18 1 -0.5967 7.6976 1.2278 19 6 5.6028 2.8868 -0.1566 20 6 6.2307 2.1296 1.0152 21 6 7.7534 2.1308 0.8658 22 6 8.2639 3.5731 0.8584 23 6 7.6360 4.3304 -0.3133 24 6 6.1127 4.3293 -0.1642 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9338 0.9328 0.8916 33 1 3.9330 0.9245 -0.8884 34 1 2.8068 5.2142 0.4619 35 1 1.7396 3.8113 0.7089 36 1 1.9797 4.0608 3.1641 37 1 3.0470 5.4638 2.9172 38 1 1.2135 6.6509 1.7428 39 1 0.1467 5.2476 1.9900 40 1 -1.5307 8.2227 5.2224 41 1 5.8768 2.4000 -1.0925 42 1 5.9567 2.6164 1.9511 43 1 5.8674 1.1019 1.0201 44 1 8.0272 1.6437 -0.0701 45 1 8.2008 1.5909 1.7004 46 1 9.3488 3.5740 0.7525 47 1 7.9903 4.0602 1.7944 48 1 7.9097 3.8434 -1.2492 49 1 8.0000 5.3578 -0.3188 50 1 5.6653 4.8685 -0.9992 51 1 5.8386 4.8165 0.7715 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = -114.237064 kcal Electronic energy + Delta-G solvation = -23312.109710 eV Core-core repulsion = 20208.862247 eV Total energy + Delta-G solvation = -3103.247463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.56580 -37.34681 -35.41733 -33.99387 -32.49583 -31.31534 -30.80775 -29.81731 -27.21133 -25.52146 -23.13010 -22.78313 -22.25962 -20.99625 -20.67689 -19.91135 -19.57130 -16.85823 -16.39190 -15.71761 -15.59489 -15.02232 -14.49696 -14.23070 -14.13151 -13.97582 -13.80074 -13.70922 -13.22911 -12.82278 -12.63871 -12.52581 -12.38999 -12.17349 -12.02525 -11.72685 -11.50162 -11.20477 -11.18970 -11.09093 -11.02501 -10.88534 -10.79143 -10.69325 -10.46608 -10.39112 -10.11106 -10.02381 -9.91227 -9.73833 -9.62307 -9.17245 -8.99754 -8.52723 -6.02865 -4.00830 3.30866 3.38233 3.41594 4.00350 4.45914 4.49144 4.64375 4.71391 4.85424 4.93212 5.01370 5.13480 5.18875 5.27590 5.29508 5.30842 5.39319 5.45322 5.50230 5.50401 5.59745 5.60846 5.66417 5.69678 5.73103 5.80319 5.85343 5.90948 5.94594 5.95391 6.05137 6.08016 6.12502 6.14446 6.18961 6.23250 6.25934 6.28093 6.36036 6.39442 6.51084 6.57066 6.63355 6.91201 7.30880 7.43527 7.62869 7.81833 8.56187 9.02761 9.59313 11.10679 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.004278 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.611681 B = 6543.444077 C = 8205.426271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.092 3.908 6 H 0.056 0.944 7 O -0.374 6.374 8 C 0.057 3.943 9 C -0.099 4.099 10 C -0.011 4.011 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.083 4.083 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 -13.783 -14.463 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.164 4.164 4 C -0.173 4.173 5 C 0.033 3.967 6 H 0.074 0.926 7 O -0.293 6.293 8 C -0.019 4.019 9 C -0.137 4.137 10 C -0.048 4.048 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.101 4.101 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.606 -13.689 -14.193 23.957 hybrid contribution -0.845 0.403 -0.975 1.352 sum 12.761 -13.285 -15.169 23.863 Atomic orbital electron populations 1.21791 0.95957 1.01303 1.02143 1.21503 0.95848 0.96979 1.01527 1.21746 0.95345 0.96810 1.02540 1.22096 0.95820 0.97094 1.02281 1.22088 0.94134 0.92668 0.87777 0.92619 1.87928 1.47857 1.62317 1.31233 1.22909 0.87113 0.91986 0.99931 1.21427 0.99431 0.99488 0.93305 1.19512 0.92747 0.94436 0.98123 1.21115 1.13618 1.28005 0.92910 0.90931 1.25026 0.97120 0.95674 0.95653 1.69913 1.28427 1.33947 1.21992 0.86788 0.80682 0.77955 0.83925 1.20285 1.21356 1.19062 1.21310 0.93473 0.96588 0.98751 1.21539 0.94092 0.99972 0.99255 1.21543 0.96336 0.96545 1.01211 1.21534 0.99220 0.95936 0.99072 1.21522 0.95805 0.99958 0.98192 1.21552 0.94846 0.96176 1.02661 0.92908 0.93053 0.92347 0.92111 0.92556 0.92504 0.90747 0.90891 0.91779 0.94247 0.93610 0.92163 0.92128 0.96648 0.97090 0.92746 0.91009 0.90745 0.92132 0.92552 0.92327 0.92577 0.91777 0.92520 0.92256 0.92592 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.13 -1.47 4.29 -26.73 -0.11 -1.59 16 4 C -0.14 -1.47 4.38 -26.72 -0.12 -1.59 16 5 C 0.09 1.11 1.99 -26.73 -0.05 1.06 16 6 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 7 O -0.37 -5.76 8.42 -35.23 -0.30 -6.06 16 8 C 0.06 0.96 5.27 37.16 0.20 1.15 16 9 C -0.10 -2.04 5.52 -26.73 -0.15 -2.18 16 10 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 11 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 12 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 15 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 C -0.08 -0.88 2.08 -90.62 -0.19 -1.07 16 20 C -0.11 -1.19 4.71 -26.73 -0.13 -1.31 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.12 5.92 -26.70 -0.16 -1.28 16 24 C -0.11 -1.28 5.06 -26.70 -0.14 -1.41 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.03 6.26 -51.93 -0.33 0.70 16 32 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.74 5.88 -51.93 -0.31 0.43 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.37 7.20 -51.92 -0.37 0.00 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 43 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -29.98 382.86 -10.40 -40.38 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -10.48 Total: -2.61 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.49 Total: -27.27 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.30 Total: -6.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.98 -10.40 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.857 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds