Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47071 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47269 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47296 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46759 * 54.99727 * 6 5 4 8 8 C 1.52996 * 109.47218 * 174.99977 * 6 5 4 9 9 C 1.53002 * 109.47218 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47055 * 300.00170 * 9 8 6 11 11 H 1.08998 * 109.47343 * 299.99754 * 10 9 8 12 12 O 1.42899 * 109.46942 * 179.97438 * 10 9 8 13 13 C 1.42905 * 113.99778 * 149.99763 * 12 10 9 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46997 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47240 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00167 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00161 * 20 18 16 24 24 C 1.52996 * 109.47247 * 59.99847 * 10 9 8 25 25 C 1.52998 * 109.47055 * 295.00147 * 6 5 4 26 26 H 1.08998 * 109.47271 * 59.99804 * 1 2 3 27 27 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47202 * 300.00169 * 1 2 3 29 29 H 1.08999 * 109.46818 * 239.99727 * 2 1 3 30 30 H 1.08999 * 109.46760 * 120.00066 * 2 1 3 31 31 H 1.08999 * 109.47509 * 60.00150 * 3 2 1 32 32 H 1.09007 * 109.47095 * 299.99620 * 3 2 1 33 33 H 1.09005 * 109.47509 * 59.99659 * 4 3 2 34 34 H 1.09002 * 109.47165 * 299.99260 * 4 3 2 35 35 H 1.08999 * 109.47249 * 59.99829 * 5 4 3 36 36 H 1.08998 * 109.47281 * 300.00028 * 5 4 3 37 37 H 1.08998 * 109.47025 * 60.00341 * 8 6 5 38 38 H 1.09001 * 109.46920 * 300.00045 * 8 6 5 39 39 H 1.09003 * 109.47076 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.46844 * 60.00230 * 9 8 6 41 41 H 1.09000 * 109.47187 * 300.00233 * 13 12 10 42 42 H 1.09001 * 109.46558 * 60.00281 * 13 12 10 43 43 H 1.09000 * 109.47486 * 300.00062 * 14 13 12 44 44 H 1.09001 * 109.47362 * 60.00784 * 14 13 12 45 45 H 1.09000 * 109.46866 * 300.00212 * 15 14 13 46 46 H 1.08996 * 109.47261 * 59.99820 * 15 14 13 47 47 H 0.96992 * 120.00032 * 179.97438 * 19 18 16 48 48 H 1.09003 * 109.47460 * 59.99874 * 24 10 9 49 49 H 1.08997 * 109.47597 * 179.97438 * 24 10 9 50 50 H 1.08998 * 109.47343 * 299.99754 * 25 6 5 51 51 H 1.09004 * 109.47074 * 59.99870 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6100 2.8849 -0.0013 7 1 5.9733 2.2951 -0.8428 8 6 6.1201 4.3219 -0.1277 9 6 7.6501 4.3219 -0.1270 10 6 8.1595 3.7131 1.1809 11 1 7.7959 4.3030 2.0222 12 8 9.5885 3.7126 1.1812 13 6 10.1695 3.8272 2.4818 14 6 11.6947 3.8154 2.3618 15 6 12.3168 3.9374 3.7544 16 6 13.8191 3.9264 3.6362 17 1 14.2837 3.8414 2.6650 18 6 14.6003 4.0260 4.7679 19 7 14.0345 4.1301 5.9506 20 14 16.4625 4.0117 4.6215 21 1 16.8458 3.8856 3.1924 22 1 17.0120 5.2772 5.1710 23 1 17.0102 2.8616 5.3847 24 6 7.6495 2.2761 1.3073 25 6 6.1200 2.2759 1.3063 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 3.7171 3.3991 0.8887 36 1 3.7163 3.3985 -0.8912 37 1 5.7568 4.9116 0.7139 38 1 5.7567 4.7557 -1.0592 39 1 8.0134 5.3456 -0.2175 40 1 8.0137 3.7320 -0.9683 41 1 9.8480 4.7613 2.9423 42 1 9.8474 2.9882 3.0987 43 1 12.0158 2.8810 1.9015 44 1 12.0171 4.6541 1.7448 45 1 11.9957 4.8716 4.2151 46 1 11.9943 3.0986 4.3712 47 1 14.5841 4.1998 6.7467 48 1 8.0132 1.6861 0.4659 49 1 8.0128 1.8422 2.2388 50 1 5.7567 2.8657 2.1479 51 1 5.7566 1.2521 1.3963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = -122.752708 kcal Electronic energy + Delta-G solvation = -21870.285043 eV Core-core repulsion = 18766.668314 eV Total energy + Delta-G solvation = -3103.616729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.45217 -37.37488 -35.95247 -33.91645 -32.81029 -31.38502 -30.88825 -29.43006 -26.73636 -25.64113 -23.16295 -23.04165 -22.24598 -21.25693 -20.74138 -20.25603 -19.69940 -16.62389 -16.17469 -16.12520 -15.48447 -15.09659 -14.73010 -14.41594 -14.25508 -14.23101 -13.92631 -13.51591 -13.32785 -13.08137 -12.74095 -12.38772 -12.30830 -12.15854 -11.98126 -11.82265 -11.61312 -11.36628 -11.25470 -11.19777 -11.14415 -10.91833 -10.86008 -10.76992 -10.57612 -10.52807 -10.34708 -10.23844 -10.12123 -9.74645 -9.40070 -9.06274 -9.01840 -8.34042 -5.99152 -4.01170 3.32664 3.39825 3.44893 3.96721 4.29849 4.48061 4.51071 4.60874 4.63975 4.70900 4.82511 4.94840 5.03110 5.12130 5.23196 5.25243 5.32736 5.35232 5.36871 5.38706 5.42536 5.43015 5.51783 5.61550 5.63517 5.68875 5.71527 5.72471 5.78660 5.85135 5.88801 5.92452 5.95239 5.98917 6.06682 6.09802 6.13568 6.18678 6.26634 6.32723 6.38022 6.73440 6.79089 7.13200 7.66061 7.72363 7.81450 8.00845 8.44156 9.05829 9.62853 11.12453 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.002032 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.561273 B =13776.440509 C =14196.675852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.089 4.089 7 H 0.071 0.929 8 C -0.110 4.110 9 C -0.116 4.116 10 C 0.089 3.911 11 H 0.055 0.945 12 O -0.386 6.386 13 C 0.063 3.937 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.142 4.142 25 C -0.112 4.112 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.260 0.740 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.184 -4.523 -12.723 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.108 4.108 7 H 0.089 0.911 8 C -0.148 4.148 9 C -0.153 4.153 10 C 0.031 3.969 11 H 0.073 0.927 12 O -0.306 6.306 13 C -0.013 4.013 14 C -0.145 4.145 15 C -0.014 4.014 16 C -0.557 4.557 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.180 4.180 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.029 -4.519 -12.704 29.314 hybrid contribution 0.895 -0.008 0.378 0.971 sum -25.135 -4.527 -12.326 28.358 Atomic orbital electron populations 1.21784 0.96046 1.01510 1.01727 1.21546 0.95725 0.97123 1.02003 1.21632 0.95696 0.96574 1.01896 1.21673 0.95000 0.97082 1.02235 1.21638 0.94965 0.96675 1.01891 1.21219 0.94675 0.96515 0.98355 0.91100 1.21550 0.94904 0.96436 1.01910 1.21572 0.94829 1.01430 0.97496 1.22005 0.82080 0.95132 0.97659 0.92689 1.87922 1.18149 1.94514 1.30001 1.22795 0.96026 0.99073 0.83383 1.21646 0.90054 1.01420 1.01402 1.19057 0.95280 0.97243 0.89866 1.21274 0.91477 1.49875 0.93029 0.92468 1.25033 0.98807 0.95330 0.95378 1.69979 1.35220 1.50656 0.97750 0.86511 0.85634 0.77551 0.78176 1.19679 1.21014 1.21011 1.22033 0.95345 0.97888 1.02694 1.21581 0.95067 1.00941 0.97315 0.92848 0.92883 0.92803 0.92129 0.92059 0.92119 0.92211 0.92112 0.91677 0.92034 0.92118 0.91939 0.91686 0.91411 0.91290 0.93996 0.94010 0.92659 0.92656 0.96510 0.96505 0.93068 0.91314 0.91728 0.92062 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.75 5.21 -26.74 -0.14 -0.89 16 4 C -0.12 -0.83 4.97 -26.73 -0.13 -0.97 16 5 C -0.11 -0.82 4.68 -26.73 -0.13 -0.94 16 6 C -0.09 -0.75 2.19 -90.62 -0.20 -0.95 16 7 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 8 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 9 C -0.12 -1.33 5.57 -26.73 -0.15 -1.47 16 10 C 0.09 1.22 2.61 -26.73 -0.07 1.15 16 11 H 0.06 0.74 7.79 -51.93 -0.40 0.33 16 12 O -0.39 -6.78 9.99 -35.23 -0.35 -7.13 16 13 C 0.06 1.19 5.75 37.16 0.21 1.40 16 14 C -0.11 -2.38 5.52 -26.73 -0.15 -2.53 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.14 -1.71 5.53 -26.76 -0.15 -1.86 16 25 C -0.11 -1.06 4.96 -26.76 -0.13 -1.19 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -30.21 393.50 -10.96 -41.17 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -10.74 Total: -6.19 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.51 Total: -24.19 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.35 Total: -7.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.21 -10.96 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.587 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds