Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00202 * 2 1 4 4 C 1.46900 * 111.00034 * 123.95148 * 2 1 3 5 5 C 1.52993 * 109.47233 * 151.79144 * 4 2 1 6 6 C 1.53004 * 109.47040 * 66.27727 * 5 4 2 7 7 C 1.52999 * 109.47457 * 306.27539 * 5 4 2 8 8 C 1.53003 * 109.47172 * 186.27373 * 5 4 2 9 9 N 1.46905 * 109.47147 * 151.79865 * 8 5 4 10 10 C 1.46897 * 110.99940 * 196.19691 * 9 8 5 11 11 C 1.50703 * 109.47165 * 145.80300 * 10 9 8 12 12 H 1.08007 * 119.99493 * 3.24402 * 11 10 9 13 13 C 1.37876 * 120.00370 * 183.24671 * 11 10 9 14 14 N 1.31516 * 119.99792 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99939 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47307 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46950 * 119.99838 * 15 13 11 18 18 H 1.48495 * 109.46794 * 239.99845 * 15 13 11 19 19 C 1.46901 * 110.99452 * 72.24755 * 9 8 5 20 20 C 1.54273 * 110.02985 * 186.44291 * 19 9 8 21 21 C 1.54963 * 104.15917 * 217.13863 * 20 19 9 22 22 C 1.54886 * 102.77815 * 37.88608 * 21 20 19 23 23 C 1.53878 * 110.03405 * 69.22813 * 19 9 8 24 24 H 1.09001 * 109.47381 * 296.04855 * 1 2 3 25 25 H 1.09002 * 109.46978 * 56.04835 * 1 2 3 26 26 H 1.08996 * 109.47241 * 176.04690 * 1 2 3 27 27 H 1.09000 * 109.47232 * 205.64660 * 3 2 1 28 28 H 1.08999 * 109.47113 * 325.64747 * 3 2 1 29 29 H 1.08991 * 109.47263 * 85.64635 * 3 2 1 30 30 H 1.09011 * 109.46933 * 31.79214 * 4 2 1 31 31 H 1.08999 * 109.47580 * 271.79898 * 4 2 1 32 32 H 1.09002 * 109.46884 * 142.85487 * 6 5 4 33 33 H 1.08994 * 109.46827 * 262.85217 * 6 5 4 34 34 H 1.09003 * 109.46974 * 22.85336 * 6 5 4 35 35 H 1.09001 * 109.46618 * 299.99972 * 7 5 4 36 36 H 1.09001 * 109.46930 * 59.99835 * 7 5 4 37 37 H 1.08999 * 109.47213 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.47313 * 31.80055 * 8 5 4 39 39 H 1.09001 * 109.47406 * 271.80305 * 8 5 4 40 40 H 1.08993 * 109.47525 * 265.80589 * 10 9 8 41 41 H 1.09010 * 109.47164 * 25.80504 * 10 9 8 42 42 H 0.96993 * 119.99583 * 180.02562 * 14 13 11 43 43 H 1.08996 * 110.01986 * 307.82984 * 19 9 8 44 44 H 1.08997 * 110.48285 * 335.78365 * 20 19 9 45 45 H 1.08998 * 110.48581 * 98.42720 * 20 19 9 46 46 H 1.09003 * 110.71977 * 279.57031 * 21 20 19 47 47 H 1.09000 * 110.92267 * 156.29495 * 21 20 19 48 48 H 1.09006 * 110.48742 * 203.40222 * 22 21 20 49 49 H 1.09002 * 110.59995 * 80.82176 * 22 21 20 50 50 H 1.08998 * 110.02839 * 238.56639 * 23 19 9 51 51 H 1.09004 * 110.03022 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.3649 -1.3430 0.7739 6 6 4.3672 -0.2015 0.5916 7 6 3.2540 -2.1373 -0.5290 8 6 3.8431 -2.2673 1.8955 9 7 4.7285 -3.2978 1.3368 10 6 4.8998 -4.4118 2.2790 11 6 5.0329 -5.7023 1.5122 12 1 5.0467 -5.6898 0.4322 13 6 5.1370 -6.8989 2.1891 14 7 5.1206 -6.9141 3.5041 15 14 5.3026 -8.4984 1.2385 16 1 5.2956 -8.2114 -0.2184 17 1 6.5787 -9.1629 1.6064 18 1 4.1648 -9.3924 1.5719 19 6 6.0269 -2.7261 0.9559 20 6 6.8777 -3.7864 0.2266 21 6 8.3226 -3.5160 0.7171 22 6 8.1151 -3.1473 2.2071 23 6 6.8135 -2.3195 2.2145 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0708 27 1 2.9906 1.3786 -0.4448 28 1 1.3336 2.0147 -0.5799 29 1 2.0529 1.7386 1.0246 30 1 1.3101 -1.5794 1.3763 31 1 2.0956 -0.1099 2.0023 32 1 5.3396 -0.5065 0.9785 33 1 4.4566 0.0377 -0.4680 34 1 4.0196 0.6775 1.1345 35 1 2.5399 -2.9505 -0.3990 36 1 2.9133 -1.4788 -1.3281 37 1 4.2298 -2.5480 -0.7883 38 1 2.9826 -2.7435 2.3657 39 1 4.3872 -1.6849 2.6391 40 1 5.7978 -4.2490 2.8748 41 1 4.0325 -4.4679 2.9369 42 1 5.1942 -7.7559 3.9802 43 1 5.8785 -1.8592 0.3121 44 1 6.5606 -4.7902 0.5094 45 1 6.8094 -3.6536 -0.8531 46 1 8.7656 -2.6830 0.1711 47 1 8.9394 -4.4096 0.6226 48 1 8.9500 -2.5487 2.5718 49 1 7.9988 -4.0465 2.8121 50 1 7.0474 -1.2554 2.1809 51 1 6.2319 -2.5469 3.1079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207282703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = 12.191123 kcal Electronic energy + Delta-G solvation = -24794.816501 eV Core-core repulsion = 21729.344127 eV Total energy + Delta-G solvation = -3065.472374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.47160 -37.84175 -35.14173 -33.33151 -31.93685 -28.26508 -28.15116 -27.59100 -26.75639 -26.56914 -26.30740 -23.88472 -22.10641 -21.33640 -19.96069 -18.68022 -17.99149 -16.32457 -15.78627 -15.41772 -15.22933 -15.10049 -14.57671 -14.37097 -13.85027 -13.42255 -13.20024 -12.95105 -12.82797 -12.58484 -12.34841 -12.27106 -12.05665 -11.65756 -11.50072 -11.21774 -11.07009 -11.00273 -10.80046 -10.72821 -10.55269 -10.51348 -10.39399 -10.26839 -10.19668 -10.12556 -10.07277 -9.91439 -9.76182 -9.11021 -8.93739 -8.31555 -8.23119 -7.02225 -5.95175 -3.92986 3.34277 3.42502 3.47302 4.00843 4.47947 4.97423 5.05554 5.11136 5.29217 5.33068 5.34867 5.36527 5.41619 5.45014 5.49388 5.56970 5.64291 5.78793 5.84012 5.87182 5.90980 6.00093 6.02900 6.15649 6.20745 6.22547 6.28361 6.31289 6.36598 6.40622 6.47375 6.50094 6.59530 6.62662 6.74131 6.85472 6.90716 6.94243 7.04627 7.07449 7.15201 7.23262 7.32847 7.49978 7.58349 7.93272 8.26365 8.41785 8.67103 9.12996 9.67787 11.14157 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.005376 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.365420 B = 5207.133465 C = 6167.105807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.020 3.980 4 C 0.066 3.934 5 C -0.052 4.052 6 C -0.149 4.149 7 C -0.106 4.106 8 C 0.063 3.937 9 N -0.519 5.519 10 C 0.183 3.817 11 C -0.489 4.489 12 H 0.068 0.932 13 C 0.053 3.947 14 N -0.899 5.899 15 Si 0.889 3.111 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.286 1.286 19 C 0.084 3.916 20 C -0.141 4.141 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.153 4.153 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.011 0.989 41 H 0.019 0.981 42 H 0.258 0.742 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.045 0.955 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 14.316 -5.020 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.128 4.128 4 C -0.062 4.062 5 C -0.053 4.053 6 C -0.206 4.206 7 C -0.164 4.164 8 C -0.066 4.066 9 N -0.242 5.242 10 C 0.058 3.942 11 C -0.527 4.527 12 H 0.086 0.914 13 C -0.148 4.148 14 N -0.540 5.540 15 Si 0.718 3.282 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.025 4.025 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.192 4.192 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.145 0.855 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.589 13.774 -5.725 15.140 hybrid contribution 0.140 -0.123 1.293 1.306 sum -2.449 13.652 -4.432 14.561 Atomic orbital electron populations 1.22428 0.87899 1.02200 0.99762 1.61904 1.07063 1.13318 1.43911 1.22662 1.01419 0.88952 0.99770 1.22375 0.96977 0.96822 0.90048 1.20519 0.92653 0.94625 0.97509 1.22370 0.99487 0.97565 1.01153 1.21508 1.02206 0.98181 0.94495 1.22162 0.96913 0.93421 0.94087 1.62352 1.10437 1.07827 1.43555 1.19902 0.96284 0.87699 0.90331 1.21244 1.47623 0.90279 0.93566 0.91379 1.24989 0.95996 0.99006 0.94788 1.69965 1.51436 1.26235 1.06342 0.86566 0.77422 0.83858 0.80372 1.19585 1.21295 1.21253 1.22448 0.89007 0.96545 0.94539 1.22990 0.92474 1.04499 0.97864 1.22426 0.98039 0.99674 0.95729 1.22258 0.96232 0.99832 0.97138 1.22804 0.97563 0.98065 1.00752 0.96213 0.91801 0.91315 0.90728 0.92569 0.95565 0.91174 0.94873 0.92000 0.92707 0.93770 0.93470 0.93651 0.91843 0.91819 0.96008 0.97177 0.96323 0.93213 0.90664 0.85537 0.93436 0.93243 0.92377 0.93452 0.91081 0.93593 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.36 60.06 0.56 0.83 16 2 N -0.54 -6.54 3.85 -251.27 -0.97 -7.51 16 3 C 0.02 0.21 8.46 60.06 0.51 0.72 16 4 C 0.07 0.88 4.06 -3.83 -0.02 0.87 16 5 C -0.05 -0.77 0.59 -154.51 -0.09 -0.86 16 6 C -0.15 -2.00 6.54 37.16 0.24 -1.75 16 7 C -0.11 -1.73 7.34 37.16 0.27 -1.45 16 8 C 0.06 1.13 4.27 -3.82 -0.02 1.11 16 9 N -0.52 -10.50 2.99 -226.73 -0.68 -11.18 16 10 C 0.18 4.51 4.21 -4.98 -0.02 4.49 16 11 C -0.49 -13.07 7.07 -34.44 -0.24 -13.31 16 12 H 0.07 1.84 6.87 -52.48 -0.36 1.47 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.08 1.53 1.60 -66.59 -0.11 1.42 16 20 C -0.14 -2.69 6.25 -25.03 -0.16 -2.85 16 21 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 22 C -0.12 -2.04 6.59 -25.08 -0.17 -2.21 16 23 C -0.15 -2.70 4.61 -25.61 -0.12 -2.81 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 26 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 27 H 0.07 0.79 5.82 -51.93 -0.30 0.49 16 28 H 0.06 0.51 7.73 -51.93 -0.40 0.11 16 29 H 0.03 0.27 7.37 -51.93 -0.38 -0.11 16 30 H 0.07 0.98 7.58 -51.92 -0.39 0.59 16 31 H 0.03 0.43 7.32 -51.93 -0.38 0.05 16 32 H 0.06 0.88 4.46 -51.93 -0.23 0.65 16 33 H 0.05 0.71 7.00 -51.93 -0.36 0.35 16 34 H 0.04 0.54 6.16 -51.93 -0.32 0.22 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.69 7.42 -51.93 -0.39 0.31 16 37 H 0.06 1.12 5.96 -51.93 -0.31 0.81 16 38 H 0.06 1.20 7.21 -51.93 -0.37 0.82 16 39 H 0.02 0.38 6.39 -51.93 -0.33 0.05 16 40 H 0.01 0.27 5.02 -51.93 -0.26 0.01 16 41 H 0.02 0.51 7.40 -51.92 -0.38 0.12 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 1.28 4.34 -51.93 -0.23 1.06 16 44 H 0.13 2.88 3.93 -51.93 -0.20 2.67 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 1.42 7.68 -51.93 -0.40 1.02 16 50 H 0.05 0.72 7.71 -51.93 -0.40 0.32 16 51 H 0.07 1.30 5.62 -51.93 -0.29 1.01 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -27.57 356.49 -9.38 -36.95 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -9.21 Total: 2.10 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 0.38 Total: -16.67 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.91 Total: -44.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.57 -9.38 -36.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207282703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.143 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds