Wall clock time and date at job start Tue Mar 31 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47314 * 179.32060 * 4 3 2 6 6 C 1.46905 * 111.00219 * 287.82080 * 5 4 3 7 7 C 1.50698 * 109.46897 * 298.44671 * 6 5 4 8 8 H 1.08004 * 120.00194 * 4.83509 * 7 6 5 9 9 C 1.37875 * 119.99910 * 184.82944 * 7 6 5 10 10 N 1.31506 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99975 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47055 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47233 * 120.00210 * 11 9 7 14 14 H 1.48502 * 109.47056 * 240.00418 * 11 9 7 15 15 C 1.46899 * 111.00268 * 163.86072 * 5 4 3 16 16 C 1.52995 * 109.47371 * 190.00382 * 15 5 4 17 17 C 1.53004 * 109.47218 * 180.02562 * 16 15 5 18 18 C 1.53119 * 109.52291 * 184.99845 * 17 16 15 19 19 C 1.53038 * 109.27529 * 182.43964 * 18 17 16 20 20 N 1.46838 * 109.52534 * 59.18322 * 19 18 17 21 21 C 1.46903 * 111.00367 * 174.15812 * 20 19 18 22 22 C 1.46856 * 111.19831 * 298.25778 * 20 19 18 23 23 C 1.53034 * 109.52307 * 61.73771 * 22 20 19 24 24 H 1.08998 * 109.47222 * 60.00226 * 1 2 3 25 25 H 1.09003 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47352 * 300.00236 * 1 2 3 27 27 H 1.09003 * 109.47352 * 239.99764 * 2 1 3 28 28 H 1.08998 * 109.47222 * 119.99774 * 2 1 3 29 29 H 1.09003 * 109.47214 * 59.99680 * 3 2 1 30 30 H 1.08999 * 109.46855 * 299.99417 * 3 2 1 31 31 H 1.09007 * 109.46918 * 59.32537 * 4 3 2 32 32 H 1.08999 * 109.47490 * 299.32668 * 4 3 2 33 33 H 1.09001 * 109.47136 * 58.44668 * 6 5 4 34 34 H 1.08997 * 109.46693 * 178.44973 * 6 5 4 35 35 H 0.97006 * 120.00467 * 179.97438 * 10 9 7 36 36 H 1.09007 * 109.46561 * 70.00102 * 15 5 4 37 37 H 1.08994 * 109.46998 * 310.00900 * 15 5 4 38 38 H 1.08994 * 109.47245 * 59.99717 * 16 15 5 39 39 H 1.09004 * 109.46787 * 300.00005 * 16 15 5 40 40 H 1.08995 * 109.56965 * 305.15879 * 17 16 15 41 41 H 1.08998 * 109.50041 * 62.49583 * 18 17 16 42 42 H 1.09003 * 109.53482 * 302.40045 * 18 17 16 43 43 H 1.08995 * 109.46285 * 299.16412 * 19 18 17 44 44 H 1.09002 * 109.45914 * 179.19291 * 19 18 17 45 45 H 1.09001 * 109.46828 * 59.99825 * 21 20 19 46 46 H 1.08995 * 109.46611 * 299.99763 * 21 20 19 47 47 H 1.09003 * 109.47159 * 179.97438 * 21 20 19 48 48 H 1.08993 * 109.46194 * 181.75845 * 22 20 19 49 49 H 1.09000 * 109.45535 * 301.72342 * 22 20 19 50 50 H 1.09000 * 109.50350 * 180.88227 * 23 22 20 51 51 H 1.08997 * 109.53340 * 60.78479 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8274 -0.0158 6 6 3.8400 3.4480 -1.3291 7 6 4.6058 2.6855 -2.3793 8 1 5.1331 1.7812 -2.1132 9 6 4.6334 3.1421 -3.6800 10 7 3.9917 4.2434 -4.0039 11 14 5.5821 2.1966 -4.9820 12 1 6.2113 1.0010 -4.3655 13 1 4.6526 1.7671 -6.0575 14 1 6.6362 3.0696 -5.5581 15 6 5.4770 2.8892 0.3653 16 6 5.8844 4.3483 0.5795 17 6 7.3608 4.4127 0.9758 18 6 7.7379 5.8583 1.3114 19 6 9.2293 5.9262 1.6479 20 7 10.0133 5.4506 0.5010 21 6 11.4522 5.6312 0.7356 22 6 9.7025 4.0495 0.1896 23 6 8.2253 3.9256 -0.1903 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9181 -0.8831 32 1 3.9330 0.9394 0.8968 33 1 2.7766 3.4268 -1.5677 34 1 4.1865 4.4811 -1.3051 35 1 4.0113 4.5649 -4.9189 36 1 6.0857 2.4546 -0.4277 37 1 5.6297 2.3301 1.2883 38 1 5.2757 4.7828 1.3724 39 1 5.7316 4.9074 -0.3437 40 1 7.5331 3.7798 1.8463 41 1 7.1557 6.1966 2.1685 42 1 7.5288 6.4980 0.4540 43 1 9.4352 5.2976 2.5142 44 1 9.5041 6.9566 1.8734 45 1 11.7496 5.0677 1.6200 46 1 11.6652 6.6889 0.8900 47 1 12.0094 5.2704 -0.1290 48 1 10.3211 3.7169 -0.6439 49 1 9.9062 3.4298 1.0629 50 1 7.9913 2.8831 -0.4061 51 1 8.0234 4.5339 -1.0719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207485376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:23 Heat of formation + Delta-G solvation = -28.088301 kcal Electronic energy + Delta-G solvation = -23501.240821 eV Core-core repulsion = 20434.021801 eV Total energy + Delta-G solvation = -3067.219021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.06760 -37.29294 -34.90445 -33.78826 -32.30414 -30.71688 -29.79381 -28.05697 -26.69418 -25.16175 -23.49701 -23.05368 -22.64845 -21.20588 -20.14333 -19.40087 -19.24456 -16.29695 -15.79459 -15.22276 -15.00562 -14.77303 -14.56337 -14.43717 -14.25233 -13.81286 -13.44295 -13.26921 -12.92179 -12.58425 -12.49350 -12.29039 -12.09880 -11.94116 -11.73902 -11.59434 -11.27449 -11.09813 -10.96848 -10.80412 -10.70463 -10.60433 -10.51065 -10.31357 -10.28689 -10.09418 -9.90498 -9.85122 -9.70887 -9.54667 -9.37776 -8.36157 -8.28480 -7.05071 -5.97392 -4.05233 3.28255 3.36862 3.39126 3.98674 4.44065 4.84649 4.97288 5.04921 5.16097 5.23466 5.32893 5.39141 5.39554 5.42766 5.55941 5.57206 5.61520 5.64973 5.70268 5.77510 5.89359 5.92856 5.93624 5.98812 6.12498 6.15840 6.18597 6.23721 6.25338 6.33825 6.35377 6.48394 6.51164 6.56104 6.57915 6.61023 6.72844 6.96596 6.97975 7.03101 7.06559 7.15055 7.15892 7.38512 7.61785 7.97185 8.17591 8.36756 8.42693 9.05230 9.60530 11.07297 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.004738 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.340275 B = 5908.268584 C = 7349.646353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.060 3.940 5 N -0.546 5.546 6 C 0.184 3.816 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.882 3.118 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.065 3.935 16 C -0.105 4.105 17 C -0.082 4.082 18 C -0.111 4.111 19 C 0.058 3.942 20 N -0.543 5.543 21 C 0.026 3.974 22 C 0.057 3.943 23 C -0.112 4.112 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.028 0.972 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 -1.121 11.096 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.269 5.269 6 C 0.059 3.941 7 C -0.579 4.579 8 H 0.073 0.927 9 C -0.136 4.136 10 N -0.529 5.529 11 Si 0.710 3.290 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.064 4.064 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.070 4.070 20 N -0.268 5.268 21 C -0.122 4.122 22 C -0.071 4.071 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.089 0.911 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.312 -0.449 10.893 12.597 hybrid contribution 1.295 -1.449 -0.829 2.113 sum 7.607 -1.898 10.064 12.757 Atomic orbital electron populations 1.21751 0.96464 1.00724 1.01711 1.21486 0.95280 0.97948 1.01308 1.21512 0.95871 0.95132 1.02235 1.21920 0.94634 0.90920 0.99337 1.62503 1.16056 1.16100 1.32228 1.19794 0.96640 0.95106 0.82605 1.21718 1.31996 1.09960 0.94274 0.92683 1.24908 0.95405 0.94848 0.98429 1.69944 1.42467 1.21685 1.18834 0.86698 0.80006 0.80136 0.82148 1.19945 1.21070 1.20953 1.21904 0.90338 0.95900 0.98226 1.21537 0.93019 0.97660 1.02012 1.21137 0.95911 0.95561 0.97530 1.21640 0.93827 0.97611 1.01842 1.22087 0.94522 0.99526 0.90835 1.61910 1.05305 1.20717 1.38895 1.22336 0.88639 1.01371 0.99898 1.22144 0.98086 0.87426 0.99429 1.21682 0.92154 1.02099 0.99069 0.92723 0.93483 0.93077 0.92257 0.92839 0.92532 0.91376 0.93747 0.93753 0.95539 0.94585 0.92986 0.93766 0.93904 0.92481 0.90738 0.92385 0.91748 0.90873 0.95373 0.91231 0.96116 0.91616 0.91557 0.91123 0.95424 0.91059 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.15 0.37 -1.57 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.11 -1.94 5.28 -26.73 -0.14 -2.08 16 4 C 0.06 1.18 4.81 -3.82 -0.02 1.16 16 5 N -0.55 -11.59 4.67 -236.07 -1.10 -12.69 16 6 C 0.18 4.64 4.77 -4.97 -0.02 4.62 16 7 C -0.54 -14.52 7.33 -34.44 -0.25 -14.77 16 8 H 0.06 1.49 5.96 -52.48 -0.31 1.17 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.89 -26.01 13.28 55.43 0.74 -25.27 16 11 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.06 1.24 4.53 -3.83 -0.02 1.22 16 16 C -0.10 -1.84 4.61 -26.73 -0.12 -1.97 16 17 C -0.08 -1.22 2.25 -90.50 -0.20 -1.43 16 18 C -0.11 -1.49 5.38 -26.65 -0.14 -1.64 16 19 C 0.06 0.71 5.46 -3.84 -0.02 0.69 16 20 N -0.54 -7.14 4.91 -242.96 -1.19 -8.34 16 21 C 0.03 0.27 9.59 60.07 0.58 0.85 16 22 C 0.06 0.77 5.46 -3.83 -0.02 0.74 16 23 C -0.11 -1.75 5.08 -26.65 -0.14 -1.89 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.37 6.72 -51.93 -0.35 1.02 16 31 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 32 H 0.04 0.78 7.80 -51.93 -0.41 0.38 16 33 H 0.03 0.72 6.64 -51.93 -0.35 0.38 16 34 H 0.04 0.98 6.36 -51.93 -0.33 0.65 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.04 0.93 5.05 -51.93 -0.26 0.67 16 37 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.54 6.50 -51.93 -0.34 1.20 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 48 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 1.16 6.70 -51.93 -0.35 0.81 16 51 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -28.23 380.11 -11.42 -39.65 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -10.16 Total: 0.79 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.41 Total: -16.27 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.56 Total: -46.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.23 -11.42 -39.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207485376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.565 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds