Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.52993 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47637 * 184.89926 * 4 3 2 6 6 C 1.46892 * 111.00298 * 199.63937 * 5 4 3 7 7 C 1.50694 * 109.47448 * 72.55628 * 6 5 4 8 8 H 1.08004 * 120.00027 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00231 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00203 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47043 * 59.99863 * 11 9 7 13 13 H 1.48503 * 109.46936 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47135 * 299.99423 * 11 9 7 15 15 C 1.46901 * 110.99711 * 75.67848 * 5 4 3 16 16 C 1.53003 * 109.46906 * 212.92437 * 15 5 4 17 17 C 1.53001 * 109.52303 * 59.19895 * 16 15 5 18 18 C 1.53110 * 109.52530 * 299.06562 * 16 15 5 19 19 C 1.53043 * 109.27621 * 182.50871 * 18 16 15 20 20 N 1.46839 * 109.57970 * 59.08039 * 19 18 16 21 21 C 1.46899 * 111.00350 * 174.19704 * 20 19 18 22 22 C 1.46848 * 111.20048 * 298.29501 * 20 19 18 23 23 C 1.53043 * 109.52331 * 61.73797 * 22 20 19 24 24 H 1.08999 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46973 * 300.00184 * 1 2 3 26 26 H 1.08990 * 109.46885 * 59.99951 * 1 2 3 27 27 H 1.08997 * 109.47120 * 239.99728 * 2 1 3 28 28 H 1.09004 * 109.46852 * 119.99920 * 2 1 3 29 29 H 1.08997 * 109.47323 * 59.99852 * 3 2 1 30 30 H 1.09004 * 109.46773 * 300.00092 * 3 2 1 31 31 H 1.09002 * 109.47108 * 64.89635 * 4 3 2 32 32 H 1.09006 * 109.47110 * 304.90228 * 4 3 2 33 33 H 1.09002 * 109.47123 * 192.55897 * 6 5 4 34 34 H 1.09002 * 109.47034 * 312.55013 * 6 5 4 35 35 H 0.96995 * 119.99842 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47580 * 332.92835 * 15 5 4 37 37 H 1.09000 * 109.46855 * 92.92908 * 15 5 4 38 38 H 1.08996 * 109.47346 * 64.73159 * 17 16 15 39 39 H 1.08994 * 109.47003 * 184.74545 * 17 16 15 40 40 H 1.09003 * 109.46435 * 304.73768 * 17 16 15 41 41 H 1.08998 * 109.50479 * 302.38257 * 18 16 15 42 42 H 1.08998 * 109.50332 * 62.50315 * 18 16 15 43 43 H 1.09009 * 109.40863 * 299.06747 * 19 18 16 44 44 H 1.09002 * 109.45822 * 179.13140 * 19 18 16 45 45 H 1.09000 * 109.47142 * 184.21622 * 21 20 19 46 46 H 1.09002 * 109.46725 * 304.20769 * 21 20 19 47 47 H 1.09000 * 109.47163 * 64.21175 * 21 20 19 48 48 H 1.08994 * 109.46540 * 301.72467 * 22 20 19 49 49 H 1.08995 * 109.45480 * 181.74471 * 22 20 19 50 50 H 1.08997 * 109.50397 * 180.88313 * 23 22 20 51 51 H 1.09005 * 109.50217 * 60.76033 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8224 0.1176 6 6 5.4528 2.9274 -0.3365 7 6 5.5022 2.8070 -1.8378 8 1 4.5899 2.6661 -2.3986 9 6 6.7120 2.8756 -2.4956 10 7 7.8230 3.0466 -1.8128 11 14 6.7733 2.7256 -4.3566 12 1 5.9704 3.8151 -4.9676 13 1 8.1816 2.8318 -4.8156 14 1 6.2166 1.4111 -4.7658 15 6 3.9160 3.3158 1.4938 16 6 3.6278 4.8183 1.4693 17 6 2.3433 5.0797 0.6802 18 6 4.7953 5.5526 0.8045 19 6 4.5298 7.0594 0.8392 20 7 4.3783 7.5005 2.2315 21 6 4.2593 8.9625 2.3107 22 6 3.2333 6.8437 2.8750 23 6 3.4608 5.3306 2.9026 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 1.0067 -0.9315 32 1 3.9337 0.8544 0.8420 33 1 5.8613 3.8921 -0.0358 34 1 6.0424 2.1276 0.1118 35 1 8.6740 3.0953 -2.2755 36 1 3.0921 2.7957 1.9822 37 1 4.8389 3.1319 2.0440 38 1 1.4987 4.6287 1.2011 39 1 2.1839 6.1542 0.5912 40 1 2.4325 4.6421 -0.3142 41 1 5.7170 5.3340 1.3436 42 1 4.8910 5.2227 -0.2299 43 1 3.6158 7.2790 0.2872 44 1 5.3665 7.5862 0.3803 45 1 4.2235 9.2680 3.3564 46 1 5.1202 9.4238 1.8267 47 1 3.3460 9.2805 1.8078 48 1 2.3255 7.0642 2.3136 49 1 3.1286 7.2138 3.8948 50 1 2.6038 4.8421 3.3662 51 1 4.3611 5.1083 3.4757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208106030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = -13.317344 kcal Electronic energy + Delta-G solvation = -24324.666664 eV Core-core repulsion = 21258.088160 eV Total energy + Delta-G solvation = -3066.578504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.56355 -37.08367 -34.78291 -33.62594 -32.25392 -30.56347 -28.65301 -28.44734 -26.89114 -25.61749 -24.03312 -23.26123 -22.37760 -21.42319 -20.66074 -19.58775 -17.89222 -16.29093 -15.63789 -15.23017 -14.85260 -14.70834 -14.53705 -14.49792 -13.99117 -13.85067 -13.49765 -13.27035 -12.92914 -12.47423 -12.25186 -12.21874 -12.05971 -11.83865 -11.60272 -11.47775 -11.28274 -11.21760 -11.00107 -10.89736 -10.75578 -10.68817 -10.63861 -10.60233 -10.31688 -10.10028 -9.95726 -9.74048 -9.60811 -9.47257 -8.99143 -8.32967 -8.05452 -7.11129 -5.96782 -3.97175 3.35522 3.40018 3.42699 4.16538 4.46158 4.82293 5.10310 5.15200 5.23466 5.24654 5.35695 5.38113 5.42499 5.47378 5.55091 5.60937 5.73281 5.75081 5.78512 5.85592 5.89211 5.95907 6.01181 6.03292 6.05579 6.08834 6.13490 6.15904 6.20701 6.29593 6.35808 6.40686 6.44322 6.50740 6.63353 6.70742 6.72540 6.81626 6.90071 7.04477 7.07863 7.31060 7.36542 7.41391 7.48602 7.89346 8.21919 8.32307 8.64683 9.11164 9.66460 11.13466 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.006728 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.828484 B = 4160.589373 C = 6403.621487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.111 4.111 4 C 0.063 3.937 5 N -0.531 5.531 6 C 0.179 3.821 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.065 3.935 16 C -0.047 4.047 17 C -0.131 4.131 18 C -0.108 4.108 19 C 0.055 3.945 20 N -0.544 5.544 21 C 0.026 3.974 22 C 0.060 3.940 23 C -0.107 4.107 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.015 0.985 33 H 0.050 0.950 34 H -0.015 1.015 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.032 0.968 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.394 3.931 8.171 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.066 4.066 5 N -0.254 5.254 6 C 0.054 3.946 7 C -0.541 4.541 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.064 4.064 16 C -0.048 4.048 17 C -0.188 4.188 18 C -0.145 4.145 19 C -0.072 4.072 20 N -0.268 5.268 21 C -0.122 4.122 22 C -0.068 4.068 23 C -0.145 4.145 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.044 4.107 8.085 14.290 hybrid contribution -0.009 -0.318 -0.868 0.925 sum -11.053 3.789 7.216 13.733 Atomic orbital electron populations 1.21752 0.96450 1.00859 1.01546 1.21516 0.95202 0.97927 1.01654 1.21609 0.96353 0.95069 1.01837 1.22000 0.93571 0.90227 1.00770 1.61997 1.25151 1.19479 1.18803 1.20101 0.81651 0.97298 0.95524 1.21129 0.92622 1.48633 0.91668 0.92135 1.24959 0.95703 0.95743 0.98134 1.69948 0.97900 1.50560 1.35422 0.86650 0.76737 0.78571 0.85948 1.20295 1.21498 1.20435 1.22065 0.98883 0.94293 0.91141 1.20457 0.95927 0.94933 0.93491 1.21806 0.95571 0.99506 1.01894 1.21903 0.97340 0.91701 1.03576 1.22230 0.99943 0.97793 0.87267 1.61952 1.41584 1.05468 1.17832 1.22323 1.00067 0.88471 1.01370 1.22046 0.91354 0.95158 0.98277 1.21653 1.01458 0.94029 0.97403 0.93369 0.93134 0.92857 0.92107 0.92656 0.92804 0.91717 0.90203 0.96721 0.93195 0.99709 0.93009 0.92829 0.95290 0.94260 0.94281 0.90490 0.91886 0.87994 0.94916 0.91294 0.91904 0.91594 0.96192 0.94937 0.91713 0.92193 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.70 5.35 -26.74 -0.14 -1.84 16 4 C 0.06 1.18 4.71 -3.83 -0.02 1.16 16 5 N -0.53 -10.77 3.20 -236.08 -0.76 -11.52 16 6 C 0.18 4.47 3.72 -4.98 -0.02 4.45 16 7 C -0.50 -13.65 8.37 -34.44 -0.29 -13.94 16 8 H 0.06 1.65 7.73 -52.48 -0.41 1.24 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 11 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.07 1.15 3.98 -3.82 -0.02 1.13 16 16 C -0.05 -0.76 0.59 -154.39 -0.09 -0.85 16 17 C -0.13 -2.01 7.79 37.16 0.29 -1.72 16 18 C -0.11 -1.94 3.34 -26.65 -0.09 -2.03 16 19 C 0.05 0.87 5.22 -3.84 -0.02 0.85 16 20 N -0.54 -7.77 4.91 -242.96 -1.19 -8.96 16 21 C 0.03 0.31 9.59 60.06 0.58 0.88 16 22 C 0.06 0.78 5.22 -3.83 -0.02 0.76 16 23 C -0.11 -1.49 4.88 -26.65 -0.13 -1.62 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 6.80 -51.93 -0.35 0.45 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.69 7.09 -51.93 -0.37 1.32 16 32 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 33 H 0.05 1.30 4.53 -51.93 -0.24 1.06 16 34 H -0.01 -0.41 8.04 -51.93 -0.42 -0.83 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 37 H 0.03 0.55 7.80 -51.93 -0.40 0.15 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.57 4.95 -51.93 -0.26 0.31 16 40 H 0.08 1.36 7.44 -51.93 -0.39 0.97 16 41 H 0.06 1.24 7.76 -51.93 -0.40 0.84 16 42 H 0.10 2.18 5.97 -51.93 -0.31 1.87 16 43 H 0.03 0.51 6.42 -51.92 -0.33 0.18 16 44 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 47 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.03 0.42 6.62 -51.93 -0.34 0.08 16 49 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -27.93 374.11 -10.47 -38.40 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -10.02 Total: -0.04 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 0.14 Total: -14.41 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -1.21 Total: -46.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.93 -10.47 -38.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208106030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.082 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds