Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46758 * 2 1 4 4 C 1.53006 * 109.47201 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47143 * 184.85491 * 4 3 2 6 6 C 1.36938 * 120.00020 * 275.84345 * 5 4 3 7 7 H 1.07996 * 119.99738 * 317.53282 * 6 5 4 8 8 C 1.38812 * 119.99866 * 137.53083 * 6 5 4 9 9 N 1.31621 * 119.99490 * 167.28951 * 8 6 5 10 10 Si 1.86802 * 120.00330 * 347.29419 * 8 6 5 11 11 H 1.48502 * 109.46780 * 91.67862 * 10 8 6 12 12 H 1.48493 * 109.46985 * 211.67911 * 10 8 6 13 13 H 1.48502 * 109.46753 * 331.68073 * 10 8 6 14 14 C 1.46507 * 119.99990 * 95.84267 * 5 4 3 15 15 C 1.52997 * 109.46798 * 96.44766 * 14 5 4 16 16 C 1.52995 * 110.01751 * 304.83204 * 15 14 5 17 17 N 1.46894 * 109.47187 * 61.90350 * 16 15 14 18 18 C 1.46907 * 111.00063 * 77.12334 * 17 16 15 19 19 C 1.46899 * 111.00048 * 201.07567 * 17 16 15 20 20 C 1.54262 * 110.07320 * 66.25301 * 15 14 5 21 21 C 1.54893 * 104.19832 * 95.69344 * 20 15 14 22 22 C 1.54891 * 102.74545 * 37.94212 * 21 20 15 23 23 C 1.53882 * 110.03033 * 183.44118 * 15 14 5 24 24 H 1.08996 * 109.46951 * 299.99531 * 1 2 3 25 25 H 1.08998 * 109.47200 * 60.00013 * 1 2 3 26 26 H 1.09010 * 109.46763 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47276 * 240.00726 * 2 1 3 28 28 H 1.08995 * 109.47699 * 120.00048 * 2 1 3 29 29 H 1.09002 * 109.47376 * 60.00300 * 3 2 1 30 30 H 1.09003 * 109.47659 * 300.00219 * 3 2 1 31 31 H 1.08995 * 109.46915 * 64.85419 * 4 3 2 32 32 H 1.09007 * 109.46665 * 304.85282 * 4 3 2 33 33 H 0.97006 * 119.99468 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47207 * 336.44687 * 14 5 4 35 35 H 1.09001 * 109.46745 * 216.44772 * 14 5 4 36 36 H 1.08995 * 109.47417 * 301.89604 * 16 15 14 37 37 H 1.09000 * 109.47138 * 181.90255 * 16 15 14 38 38 H 1.08999 * 109.46654 * 164.50062 * 18 17 16 39 39 H 1.08998 * 109.46956 * 284.49940 * 18 17 16 40 40 H 1.08998 * 109.46735 * 44.50126 * 18 17 16 41 41 H 1.08996 * 109.47467 * 299.99768 * 19 17 16 42 42 H 1.08999 * 109.46929 * 60.00194 * 19 17 16 43 43 H 1.08999 * 109.47344 * 179.97438 * 19 17 16 44 44 H 1.08998 * 110.48687 * 214.37232 * 20 15 14 45 45 H 1.09003 * 110.48965 * 337.01183 * 20 15 14 46 46 H 1.08998 * 110.75514 * 279.62582 * 21 20 15 47 47 H 1.08997 * 110.75506 * 156.25505 * 21 20 15 48 48 H 1.09003 * 110.48191 * 203.37897 * 22 21 20 49 49 H 1.09002 * 110.48691 * 80.73919 * 22 21 20 50 50 H 1.09003 * 110.02859 * 359.95094 * 23 15 14 51 51 H 1.08997 * 110.02979 * 121.37884 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 -0.0006 5 7 4.0582 2.8189 0.1162 6 6 4.1721 3.6023 -1.0012 7 1 4.5769 3.1874 -1.9124 8 6 3.7673 4.9295 -0.9625 9 7 4.0999 5.7476 -1.9385 10 14 2.7505 5.5545 0.4745 11 1 3.6538 6.0955 1.5217 12 1 1.8378 6.6277 0.0053 13 1 1.9519 4.4369 1.0389 14 6 4.4247 3.3572 1.4286 15 6 5.9355 3.2248 1.6303 16 6 6.3638 1.7685 1.4386 17 7 6.0592 1.3452 0.0654 18 6 7.0474 1.8789 -0.8815 19 6 5.9772 -0.1185 -0.0284 20 6 6.6844 4.1316 0.6321 21 6 6.9649 5.4276 1.4328 22 6 7.2946 4.8905 2.8477 23 6 6.3235 3.7073 3.0391 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9565 -0.8900 31 1 3.9329 1.0062 -0.9311 32 1 3.9336 0.8552 0.8425 33 1 3.8167 6.6750 -1.9117 34 1 3.9039 2.8007 2.2079 35 1 4.1417 4.4085 1.4820 36 1 5.8237 1.1353 2.1424 37 1 7.4353 1.6784 1.6173 38 1 6.9706 1.3427 -1.8274 39 1 6.8556 2.9389 -1.0480 40 1 8.0493 1.7509 -0.4716 41 1 6.9305 -0.5556 0.2686 42 1 5.1896 -0.4813 0.6321 43 1 5.7502 -0.4047 -1.0553 44 1 7.6193 3.6658 0.3207 45 1 6.0573 4.3461 -0.2333 46 1 6.0811 6.0651 1.4578 47 1 7.8171 5.9632 1.0146 48 1 7.1127 5.6587 3.5993 49 1 8.3281 4.5472 2.8941 50 1 5.4355 4.0366 3.5787 51 1 6.8169 2.9039 3.5861 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208185408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = 40.616137 kcal Electronic energy + Delta-G solvation = -25871.134585 eV Core-core repulsion = 22806.894812 eV Total energy + Delta-G solvation = -3064.239773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.35827 -35.97526 -35.48994 -33.72125 -31.44191 -30.20403 -28.71757 -27.64870 -26.70122 -25.65618 -24.45016 -23.52642 -21.04996 -20.88716 -20.06267 -19.71891 -18.31119 -16.44578 -15.58074 -15.11264 -14.77216 -14.60059 -14.48543 -14.02721 -13.91678 -13.41347 -13.15835 -12.82083 -12.65916 -12.42981 -12.12738 -11.99336 -11.92582 -11.64479 -11.57599 -11.31463 -11.12291 -11.04335 -10.68412 -10.58000 -10.55388 -10.34193 -10.29973 -10.17210 -10.04870 -9.85602 -9.67155 -9.50355 -9.42302 -9.34956 -9.14967 -8.24195 -7.40472 -6.28042 -5.77424 -3.17647 3.42876 3.58432 3.63642 4.59517 4.69248 5.14544 5.23380 5.36409 5.41913 5.47262 5.51559 5.63842 5.68616 5.69077 5.76082 5.77954 5.88430 6.05307 6.09251 6.12683 6.13235 6.14658 6.17466 6.21256 6.24783 6.30472 6.32791 6.40726 6.41276 6.46308 6.52303 6.55056 6.57339 6.64178 6.78880 6.86138 6.89062 6.93191 7.00155 7.03257 7.14506 7.24798 7.46344 7.68479 7.78942 7.81923 8.34692 8.69235 9.31264 9.97915 10.48795 11.38210 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.009091 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.397849 B = 3079.076529 C = 4021.223179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.188 3.812 5 N -0.581 5.581 6 C -0.225 4.225 7 H 0.075 0.925 8 C 0.028 3.972 9 N -0.916 5.916 10 Si 0.882 3.118 11 H -0.288 1.288 12 H -0.313 1.313 13 H -0.271 1.271 14 C 0.158 3.842 15 C -0.073 4.073 16 C 0.084 3.916 17 N -0.498 5.498 18 C 0.021 3.979 19 C 0.023 3.977 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.118 4.118 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.004 0.996 41 H 0.005 0.995 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.129 0.871 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -8.928 7.145 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.192 4.192 4 C 0.062 3.938 5 N -0.300 5.300 6 C -0.355 4.355 7 H 0.092 0.908 8 C -0.170 4.170 9 N -0.560 5.560 10 Si 0.715 3.285 11 H -0.217 1.217 12 H -0.242 1.242 13 H -0.197 1.197 14 C 0.032 3.968 15 C -0.077 4.077 16 C -0.045 4.045 17 N -0.220 5.220 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.159 4.159 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.732 -8.602 6.928 11.378 hybrid contribution 0.257 0.213 1.198 1.243 sum 2.989 -8.390 8.125 12.056 Atomic orbital electron populations 1.21776 0.97100 1.00308 1.01534 1.21473 0.94772 0.98703 1.00755 1.22462 1.01391 0.93855 1.01449 1.20751 0.87896 0.86467 0.98692 1.43650 1.73433 1.10484 1.02471 1.18633 1.33803 0.91959 0.91108 0.90758 1.25536 0.98005 0.97401 0.96056 1.69781 1.48101 1.04727 1.33359 0.86887 0.81038 0.77588 0.82959 1.21672 1.24247 1.19655 1.21081 0.90586 0.96867 0.88249 1.21815 0.99462 0.93539 0.92836 1.22056 0.96401 0.96263 0.89737 1.62295 1.47646 1.07162 1.04886 1.22857 0.90759 1.04255 0.94842 1.22527 0.98700 0.89542 1.01815 1.23062 0.99674 0.92802 1.00714 1.22540 1.00352 0.98892 0.94685 1.22322 0.98474 0.97306 0.97808 1.22246 0.98592 0.97242 0.97570 0.93332 0.92964 0.93792 0.92645 0.93172 0.93731 0.92208 0.93582 0.94901 0.93216 0.95071 0.94195 0.92638 0.96420 0.93308 0.87911 0.97731 0.97664 0.91873 0.91929 0.93408 0.85313 0.91980 0.92855 0.92963 0.92670 0.92458 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.15 -2.82 5.50 -26.73 -0.15 -2.96 16 4 C 0.19 3.58 2.94 -4.04 -0.01 3.56 16 5 N -0.58 -12.60 0.89 -173.23 -0.15 -12.75 16 6 C -0.23 -5.72 6.88 -15.06 -0.10 -5.82 16 7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.03 0.78 4.71 -17.43 -0.08 0.70 16 9 N -0.92 -26.90 13.97 55.49 0.78 -26.12 16 10 Si 0.88 22.47 24.77 -169.99 -4.21 18.26 16 11 H -0.29 -7.20 6.70 56.52 0.38 -6.82 16 12 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 13 H -0.27 -6.84 7.08 56.52 0.40 -6.44 16 14 C 0.16 3.30 3.48 -4.04 -0.01 3.29 16 15 C -0.07 -1.33 0.65 -153.39 -0.10 -1.43 16 16 C 0.08 1.37 3.35 -3.83 -0.01 1.36 16 17 N -0.50 -8.36 0.97 -251.27 -0.24 -8.60 16 18 C 0.02 0.36 8.04 60.07 0.48 0.84 16 19 C 0.02 0.32 7.61 60.06 0.46 0.78 16 20 C -0.13 -2.46 3.80 -25.07 -0.10 -2.56 16 21 C -0.13 -2.35 6.91 -24.74 -0.17 -2.52 16 22 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 23 C -0.12 -1.89 6.11 -25.61 -0.16 -2.05 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.90 6.89 -51.93 -0.36 0.55 16 32 H 0.03 0.58 5.19 -51.92 -0.27 0.31 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 35 H 0.04 0.94 2.80 -51.93 -0.15 0.79 16 36 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 37 H 0.02 0.29 7.71 -51.93 -0.40 -0.11 16 38 H 0.05 0.81 7.83 -51.93 -0.41 0.40 16 39 H 0.10 2.06 4.25 -51.93 -0.22 1.84 16 40 H 0.00 0.07 7.52 -51.93 -0.39 -0.32 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.06 0.85 6.60 -51.93 -0.34 0.51 16 43 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 44 H 0.05 0.89 5.77 -51.93 -0.30 0.59 16 45 H 0.13 3.04 3.66 -51.93 -0.19 2.85 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 51 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -27.05 355.39 -8.09 -35.14 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -9.70 Total: 1.18 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.38 Total: -47.48 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.21 Total: 18.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.05 -8.09 -35.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208185408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.760 kcal (2) G-P(sol) polarization free energy of solvation -27.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds