Wall clock time and date at job start Tue Mar 31 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46902 * 2 1 4 4 N 1.46906 * 109.47300 * 186.02467 * 3 2 1 5 5 C 1.46905 * 110.99617 * 294.49042 * 4 3 2 6 6 C 1.50702 * 109.47209 * 74.76692 * 5 4 3 7 7 H 1.08003 * 120.00181 * 5.60799 * 6 5 4 8 8 C 1.37873 * 120.00290 * 185.59753 * 6 5 4 9 9 N 1.31512 * 120.00677 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99730 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47010 * 89.99808 * 10 8 6 12 12 H 1.48496 * 109.47148 * 209.99984 * 10 8 6 13 13 H 1.48501 * 109.47007 * 329.99816 * 10 8 6 14 14 C 1.46895 * 111.00532 * 170.53719 * 4 3 2 15 15 C 1.52999 * 109.46775 * 272.42643 * 14 4 3 16 16 C 1.52998 * 110.02176 * 65.21307 * 15 14 4 17 17 N 1.46909 * 109.47121 * 53.54730 * 16 15 14 18 18 C 1.46900 * 110.99673 * 72.57332 * 17 16 15 19 19 C 1.46894 * 110.99962 * 196.53263 * 17 16 15 20 20 C 1.54264 * 110.03204 * 303.76854 * 15 14 4 21 21 C 1.54890 * 104.19477 * 217.10757 * 20 15 14 22 22 C 1.54884 * 102.75146 * 37.94432 * 21 20 15 23 23 C 1.53875 * 110.03239 * 186.60404 * 15 14 4 24 24 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47032 * 299.99877 * 1 2 3 26 26 H 1.08992 * 109.47076 * 60.00174 * 1 2 3 27 27 H 1.08994 * 109.47450 * 239.99927 * 2 1 3 28 28 H 1.09003 * 109.47095 * 119.99289 * 2 1 3 29 29 H 1.08994 * 109.47591 * 66.02289 * 3 2 1 30 30 H 1.09005 * 109.46969 * 306.01705 * 3 2 1 31 31 H 1.08999 * 109.47313 * 194.77024 * 5 4 3 32 32 H 1.09001 * 109.47021 * 314.77524 * 5 4 3 33 33 H 0.96991 * 120.00711 * 179.97438 * 9 8 6 34 34 H 1.08989 * 109.47408 * 152.42344 * 14 4 3 35 35 H 1.08996 * 109.46878 * 32.42116 * 14 4 3 36 36 H 1.08995 * 109.47772 * 173.54783 * 16 15 14 37 37 H 1.09000 * 109.47107 * 293.55208 * 16 15 14 38 38 H 1.09005 * 109.47002 * 46.78530 * 18 17 16 39 39 H 1.09002 * 109.46788 * 166.77658 * 18 17 16 40 40 H 1.08991 * 109.47614 * 286.78238 * 18 17 16 41 41 H 1.08996 * 109.47450 * 59.99989 * 19 17 16 42 42 H 1.09003 * 109.46754 * 180.02562 * 19 17 16 43 43 H 1.09004 * 109.47172 * 300.00036 * 19 17 16 44 44 H 1.08997 * 110.48897 * 335.78824 * 20 15 14 45 45 H 1.08999 * 110.48777 * 98.42894 * 20 15 14 46 46 H 1.08996 * 110.75598 * 279.62748 * 21 20 15 47 47 H 1.09008 * 110.75249 * 156.25811 * 21 20 15 48 48 H 1.08998 * 110.48997 * 203.37643 * 22 21 20 49 49 H 1.08998 * 110.48637 * 80.73035 * 22 21 20 50 50 H 1.08999 * 110.03761 * 238.57029 * 23 15 14 51 51 H 1.09012 * 110.03041 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5018 1.4452 -0.1454 5 6 4.1481 0.8343 1.0239 6 6 3.9760 -0.6619 0.9685 7 1 3.5204 -1.1214 0.1038 8 6 4.4003 -1.4441 2.0216 9 7 4.2505 -2.7498 1.9731 10 14 5.1879 -0.6493 3.5174 11 1 4.1368 -0.3163 4.5121 12 1 6.1622 -1.5919 4.1235 13 1 5.8908 0.5923 3.1057 14 6 4.0057 2.8059 -0.3744 15 6 3.9825 3.1127 -1.8731 16 6 2.5393 3.1368 -2.3806 17 7 1.7472 4.0632 -1.5604 18 6 2.0986 5.4589 -1.8548 19 6 0.3085 3.8320 -1.7459 20 6 4.7966 2.0519 -2.6423 21 6 5.4932 2.8524 -3.7706 22 6 5.8609 4.1832 -3.0687 23 6 4.6592 4.4678 -2.1442 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.7674 1.9243 0.9389 30 1 1.5913 1.9865 -0.8313 31 1 5.2105 1.0781 1.0206 32 1 3.6897 1.2192 1.9348 33 1 4.5493 -3.3001 2.7138 34 1 5.0278 2.8820 -0.0037 35 1 3.3739 3.5207 0.1527 36 1 2.5247 3.4676 -3.4190 37 1 2.1133 2.1358 -2.3120 38 1 2.1296 5.6058 -2.9344 39 1 1.3505 6.1214 -1.4193 40 1 3.0761 5.6851 -1.4291 41 1 0.0640 2.8107 -1.4543 42 1 -0.2544 4.5314 -1.1277 43 1 0.0483 3.9829 -2.7936 44 1 5.5369 1.5911 -1.9884 45 1 4.1350 1.2952 -3.0640 46 1 4.8073 3.0292 -4.5990 47 1 6.3899 2.3360 -4.1136 48 1 5.9761 4.9819 -3.8015 49 1 6.7731 4.0666 -2.4836 50 1 3.9598 5.1424 -2.6380 51 1 5.0037 4.9071 -1.2079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208190495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:46 Heat of formation + Delta-G solvation = 19.180524 kcal Electronic energy + Delta-G solvation = -25076.856896 eV Core-core repulsion = 22011.687606 eV Total energy + Delta-G solvation = -3065.169291 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.83395 -36.51346 -36.20117 -32.43161 -32.38833 -30.26133 -29.09866 -27.63865 -27.09168 -26.52646 -24.82105 -22.99380 -21.66733 -20.81812 -20.43829 -19.67250 -18.40899 -16.60150 -15.71593 -15.42071 -15.33918 -14.71489 -14.44381 -14.28820 -14.05016 -13.70799 -13.60367 -13.06615 -12.71354 -12.54339 -12.39330 -12.29603 -12.08084 -12.00376 -11.80110 -11.62060 -11.27971 -11.08099 -10.91444 -10.75390 -10.67066 -10.59778 -10.41415 -10.28931 -10.26850 -10.07717 -9.92415 -9.75619 -9.70151 -9.15504 -8.94112 -8.40399 -8.22231 -7.10482 -5.95789 -3.87769 3.33342 3.41314 3.44389 4.05824 4.50164 4.74151 4.89154 4.95878 5.15947 5.19477 5.28011 5.34654 5.37589 5.44831 5.58686 5.63362 5.68808 5.78854 5.80002 5.82449 5.87780 5.95451 5.97177 6.00813 6.02404 6.07339 6.12345 6.17978 6.23673 6.31295 6.36196 6.41935 6.49237 6.52825 6.67832 6.70403 6.78276 6.83673 6.85378 6.97202 7.08430 7.16996 7.19416 7.28200 7.68913 7.77905 8.14104 8.33185 8.81354 9.16309 9.67201 11.16500 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.006191 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.373624 B = 4521.277746 C = 5424.752418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.063 3.937 4 N -0.524 5.524 5 C 0.162 3.838 6 C -0.496 4.496 7 H 0.092 0.908 8 C 0.065 3.935 9 N -0.903 5.903 10 Si 0.869 3.131 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.270 1.270 14 C 0.071 3.929 15 C -0.043 4.043 16 C 0.064 3.936 17 N -0.539 5.539 18 C 0.014 3.986 19 C 0.021 3.979 20 C -0.094 4.094 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.130 4.130 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.020 0.980 32 H -0.018 1.018 33 H 0.261 0.739 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 15.340 -9.693 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.065 4.065 4 N -0.247 5.247 5 C 0.035 3.965 6 C -0.535 4.535 7 H 0.109 0.891 8 C -0.136 4.136 9 N -0.542 5.542 10 Si 0.697 3.303 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.194 1.194 14 C -0.057 4.057 15 C -0.045 4.045 16 C -0.063 4.063 17 N -0.262 5.262 18 C -0.134 4.134 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.167 4.167 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.029 0.971 30 H 0.096 0.904 31 H 0.038 0.962 32 H -0.001 1.001 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.407 14.804 -9.488 17.911 hybrid contribution 0.033 0.997 0.847 1.309 sum -3.374 15.801 -8.641 18.323 Atomic orbital electron populations 1.21807 0.98443 1.00480 0.99805 1.22022 0.92102 0.97312 1.05364 1.22351 0.88357 0.96715 0.99063 1.61876 1.04717 1.16449 1.41658 1.20244 0.93536 0.96177 0.86543 1.21262 1.38521 0.88923 1.04771 0.89061 1.24896 0.95923 0.94703 0.98066 1.69883 1.48268 1.03883 1.32209 0.86953 0.79757 0.79538 0.84033 1.20596 1.21452 1.19446 1.22077 0.98759 0.91128 0.93772 1.21090 0.93143 0.93810 0.96413 1.22403 0.93919 0.97078 0.92876 1.61987 1.04578 1.03802 1.55851 1.22818 1.02477 0.89649 0.98412 1.22462 0.88578 1.02799 0.98880 1.22200 0.98757 0.96520 0.95698 1.22561 0.99893 0.96141 0.98085 1.22360 0.98363 0.97246 0.98193 1.22740 0.97085 0.97623 0.99299 0.93434 0.93883 0.94488 0.92249 0.87687 0.97060 0.90367 0.96224 1.00064 0.92902 0.92853 0.93840 0.95585 0.89239 0.95811 0.92483 0.89990 0.90797 0.91763 0.96215 0.90636 0.91612 0.92429 0.92135 0.92661 0.91980 0.90896 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.64 4.50 -26.73 -0.12 -2.76 16 3 C 0.06 1.20 4.23 -3.82 -0.02 1.18 16 4 N -0.52 -10.63 3.85 -236.07 -0.91 -11.54 16 5 C 0.16 3.90 3.76 -4.97 -0.02 3.88 16 6 C -0.50 -13.63 7.03 -34.44 -0.24 -13.87 16 7 H 0.09 2.69 6.11 -52.48 -0.32 2.37 16 8 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 9 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 10 Si 0.87 21.75 27.36 -169.99 -4.65 17.10 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.56 6.71 56.52 0.38 -6.19 16 14 C 0.07 1.24 3.74 -3.83 -0.01 1.22 16 15 C -0.04 -0.62 0.54 -153.39 -0.08 -0.70 16 16 C 0.06 0.87 3.15 -3.82 -0.01 0.86 16 17 N -0.54 -6.79 3.13 -251.26 -0.79 -7.58 16 18 C 0.01 0.15 8.11 60.06 0.49 0.64 16 19 C 0.02 0.24 9.17 60.06 0.55 0.79 16 20 C -0.09 -1.40 5.43 -25.07 -0.14 -1.53 16 21 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 23 C -0.13 -1.56 4.33 -25.61 -0.11 -1.67 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.27 7.54 -51.93 -0.39 0.88 16 28 H 0.10 2.56 5.51 -51.93 -0.29 2.28 16 29 H 0.01 0.23 7.98 -51.93 -0.41 -0.19 16 30 H 0.08 1.30 1.78 -51.93 -0.09 1.21 16 31 H 0.02 0.49 6.98 -51.93 -0.36 0.13 16 32 H -0.02 -0.46 7.02 -51.93 -0.36 -0.82 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.05 0.96 7.40 -51.93 -0.38 0.58 16 35 H 0.04 0.76 6.98 -51.93 -0.36 0.40 16 36 H 0.03 0.34 7.83 -51.93 -0.41 -0.07 16 37 H 0.09 1.37 5.77 -51.93 -0.30 1.07 16 38 H 0.02 0.24 7.36 -51.93 -0.38 -0.14 16 39 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 40 H 0.08 0.88 5.31 -51.93 -0.28 0.60 16 41 H 0.07 0.89 6.67 -51.93 -0.35 0.55 16 42 H 0.06 0.66 7.99 -51.93 -0.42 0.24 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 45 H 0.07 1.04 7.80 -51.93 -0.40 0.63 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 0.80 4.50 -51.93 -0.23 0.57 16 51 H 0.06 0.75 7.53 -51.92 -0.39 0.36 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -28.62 359.55 -9.43 -38.06 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -9.49 Total: 0.74 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 0.21 Total: -15.63 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.92 Total: -45.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.65 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.62 -9.43 -38.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208190495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.237 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds