Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.53002 * 109.47349 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00253 * 66.04530 * 5 4 3 7 7 C 1.50703 * 109.47032 * 195.14370 * 6 5 4 8 8 H 1.07996 * 120.00574 * 5.28858 * 7 6 5 9 9 C 1.37877 * 119.99558 * 185.28840 * 7 6 5 10 10 N 1.31512 * 120.00326 * 5.23992 * 9 7 6 11 11 Si 1.86799 * 119.99783 * 185.24082 * 9 7 6 12 12 H 1.48506 * 109.47172 * 65.00238 * 11 9 7 13 13 H 1.48507 * 109.47078 * 184.99605 * 11 9 7 14 14 H 1.48498 * 109.47442 * 304.99994 * 11 9 7 15 15 C 1.46899 * 111.00077 * 189.99591 * 5 4 3 16 16 C 1.53006 * 109.47169 * 77.01483 * 15 5 4 17 17 C 1.53117 * 109.52331 * 183.06928 * 16 15 5 18 18 C 1.53042 * 109.27536 * 182.37458 * 17 16 15 19 19 N 1.46849 * 109.52302 * 59.17833 * 18 17 16 20 20 C 1.46903 * 110.99757 * 174.15843 * 19 18 17 21 21 C 1.52997 * 109.46961 * 175.79688 * 20 19 18 22 22 C 1.46847 * 111.19828 * 298.25678 * 19 18 17 23 23 C 1.53042 * 109.52115 * 61.74293 * 22 19 18 24 24 H 1.09004 * 109.46861 * 300.00075 * 1 2 3 25 25 H 1.09002 * 109.47622 * 59.99880 * 1 2 3 26 26 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46861 * 239.99925 * 2 1 3 28 28 H 1.08998 * 109.47178 * 120.00292 * 2 1 3 29 29 H 1.08994 * 109.47325 * 60.00166 * 3 2 1 30 30 H 1.09006 * 109.46722 * 300.00080 * 3 2 1 31 31 H 1.09004 * 109.47192 * 59.99611 * 4 3 2 32 32 H 1.08998 * 109.46665 * 300.00089 * 4 3 2 33 33 H 1.09003 * 109.46877 * 315.13967 * 6 5 4 34 34 H 1.08994 * 109.47059 * 75.14421 * 6 5 4 35 35 H 0.97003 * 120.00442 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47213 * 317.01290 * 15 5 4 37 37 H 1.08997 * 109.47292 * 197.01188 * 15 5 4 38 38 H 1.09010 * 109.51834 * 303.19412 * 16 15 5 39 39 H 1.09004 * 109.50437 * 62.43604 * 17 16 15 40 40 H 1.08998 * 109.53782 * 302.33354 * 17 16 15 41 41 H 1.09005 * 109.45935 * 299.16237 * 18 17 16 42 42 H 1.09000 * 109.44762 * 179.19025 * 18 17 16 43 43 H 1.09005 * 109.47098 * 295.79409 * 20 19 18 44 44 H 1.08996 * 109.47231 * 55.79449 * 20 19 18 45 45 H 1.09006 * 109.47117 * 291.08234 * 21 20 19 46 46 H 1.09002 * 109.47271 * 51.07957 * 21 20 19 47 47 H 1.08997 * 109.47394 * 171.07850 * 21 20 19 48 48 H 1.08997 * 109.45966 * 181.75618 * 22 19 18 49 49 H 1.08999 * 109.46300 * 301.72868 * 22 19 18 50 50 H 1.09007 * 109.49829 * 180.87834 * 23 22 19 51 51 H 1.09000 * 109.50119 * 60.76245 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8274 -0.0013 6 6 3.7107 3.5098 1.2520 7 6 3.8862 4.9967 1.0801 8 1 4.1403 5.4021 0.1119 9 6 3.7224 5.8394 2.1590 10 7 3.5150 5.3401 3.3579 11 14 3.7950 7.6903 1.9178 12 1 2.6569 8.1238 1.0679 13 1 3.7119 8.3652 3.2381 14 1 5.0737 8.0535 1.2558 15 6 5.5084 2.8735 -0.2399 16 6 5.7877 2.6470 -1.7271 17 6 7.3000 2.6185 -1.9652 18 6 7.5728 2.4511 -3.4617 19 7 6.9640 3.5655 -4.1992 20 6 7.3224 3.5128 -5.6229 21 6 6.5879 4.6243 -6.3752 22 6 5.5062 3.5848 -4.0239 23 6 5.1717 3.7861 -2.5441 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 2.6731 3.2935 1.5067 34 1 4.3622 3.1570 2.0514 35 1 3.3994 5.9330 4.1169 36 1 5.9979 2.0945 0.3445 37 1 5.8949 3.8482 0.0579 38 1 5.3519 1.6978 -2.0391 39 1 7.7386 1.7830 -1.4196 40 1 7.7415 3.5523 -1.6171 41 1 7.1436 1.5101 -3.8060 42 1 8.6488 2.4449 -3.6360 43 1 8.3983 3.6497 -5.7321 44 1 7.0358 2.5449 -6.0341 45 1 5.5210 4.4021 -6.4008 46 1 6.7489 5.5749 -5.8667 47 1 6.9704 4.6878 -7.3938 48 1 5.0811 4.4019 -4.6067 49 1 5.0867 2.6385 -4.3656 50 1 4.0896 3.7848 -2.4122 51 1 5.5790 4.7386 -2.2053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208600648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -23.873093 kcal Electronic energy + Delta-G solvation = -23623.307056 eV Core-core repulsion = 20556.270820 eV Total energy + Delta-G solvation = -3067.036236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.15816 -37.21054 -34.81367 -33.68617 -32.32597 -30.73373 -29.99444 -28.58379 -27.05737 -25.17494 -23.21274 -22.85099 -22.44711 -21.09758 -20.53778 -19.66326 -19.09703 -16.39061 -16.03790 -15.18671 -15.01944 -14.73854 -14.56945 -14.34758 -14.15345 -13.84214 -13.55322 -13.19309 -13.10274 -12.84222 -12.45007 -12.21025 -12.01959 -11.94682 -11.73902 -11.54581 -11.38011 -11.29111 -11.07320 -10.88860 -10.86474 -10.77080 -10.65395 -10.61204 -10.31500 -10.12277 -9.92812 -9.92148 -9.74513 -9.44854 -9.10607 -8.36002 -8.20254 -7.12858 -5.96536 -3.96432 3.37709 3.41528 3.45024 3.99335 4.47583 4.81942 4.92871 5.07264 5.10135 5.21727 5.26336 5.28210 5.38338 5.41088 5.44353 5.46402 5.56970 5.62297 5.69106 5.74193 5.78669 5.83851 5.90923 5.97475 6.02811 6.04626 6.07277 6.11297 6.14854 6.16358 6.26780 6.31695 6.37897 6.41404 6.42313 6.60639 6.65731 6.75086 6.85681 6.90389 7.01224 7.22585 7.27258 7.36554 7.46905 7.90479 8.20892 8.29427 8.64707 9.12403 9.67223 11.13881 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.005536 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.604662 B = 5056.178370 C = 6995.818482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.058 3.942 5 N -0.533 5.533 6 C 0.190 3.810 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.069 3.931 16 C -0.078 4.078 17 C -0.113 4.113 18 C 0.061 3.939 19 N -0.538 5.538 20 C 0.051 3.949 21 C -0.153 4.153 22 C 0.052 3.948 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.029 0.971 34 H -0.007 1.007 35 H 0.260 0.740 36 H 0.016 0.984 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.025 0.975 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -8.255 -14.188 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.071 4.071 5 N -0.257 5.257 6 C 0.065 3.935 7 C -0.540 4.540 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.059 4.059 16 C -0.097 4.097 17 C -0.151 4.151 18 C -0.067 4.067 19 N -0.264 5.264 20 C -0.076 4.076 21 C -0.211 4.211 22 C -0.076 4.076 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.011 0.989 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.043 0.957 50 H 0.100 0.900 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.607 -7.508 -14.181 16.446 hybrid contribution 0.129 -0.239 0.363 0.454 sum 3.736 -7.747 -13.818 16.276 Atomic orbital electron populations 1.21753 0.96247 1.00797 1.01931 1.21499 0.95542 0.97771 1.01193 1.21621 0.95410 0.95203 1.03082 1.22027 0.95099 0.91288 0.98671 1.62059 1.12126 1.12379 1.39169 1.19785 0.95957 0.93633 0.84155 1.21143 1.46545 0.91057 0.95272 0.91840 1.24971 0.95727 0.98802 0.95071 1.69958 1.50111 1.35012 0.98945 0.86630 0.78662 0.85509 0.77033 1.20321 1.21536 1.20190 1.21985 0.89271 1.01347 0.93308 1.21158 0.93784 0.98412 0.96383 1.21629 0.97008 1.02246 0.94221 1.22027 0.98704 0.91232 0.94723 1.62041 1.10855 1.44324 1.09159 1.22040 1.00210 0.97342 0.88057 1.21873 1.00286 0.99512 0.99386 1.22264 0.86806 0.99708 0.98791 1.21481 1.01846 0.98831 0.91404 0.92685 0.92873 0.93415 0.92697 0.92559 0.91238 0.91668 0.92637 0.96479 0.95300 0.98913 0.93026 0.96626 0.89766 0.92597 0.92115 0.90944 0.95490 0.91404 0.91135 0.95549 0.92610 0.91514 0.92546 0.90764 0.95722 0.90000 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.12 -1.94 5.17 -26.73 -0.14 -2.08 16 4 C 0.06 1.04 4.78 -3.83 -0.02 1.02 16 5 N -0.53 -11.14 3.82 -236.07 -0.90 -12.04 16 6 C 0.19 4.86 4.61 -4.97 -0.02 4.84 16 7 C -0.50 -13.89 8.25 -34.44 -0.28 -14.18 16 8 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 9 C 0.06 1.56 5.45 -17.82 -0.10 1.46 16 10 N -0.90 -26.78 13.28 55.43 0.74 -26.05 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.07 1.33 4.25 -3.82 -0.02 1.32 16 16 C -0.08 -1.23 2.31 -90.50 -0.21 -1.44 16 17 C -0.11 -1.56 5.38 -26.65 -0.14 -1.70 16 18 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 19 N -0.54 -7.02 4.77 -234.66 -1.12 -8.14 16 20 C 0.05 0.55 5.85 -3.82 -0.02 0.53 16 21 C -0.15 -1.48 9.05 37.16 0.34 -1.15 16 22 C 0.05 0.71 5.04 -3.83 -0.02 0.69 16 23 C -0.10 -1.58 5.22 -26.65 -0.14 -1.72 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.33 6.29 -51.93 -0.33 1.01 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.91 6.67 -51.93 -0.35 0.56 16 32 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.03 0.78 5.96 -51.93 -0.31 0.47 16 34 H -0.01 -0.20 8.04 -51.93 -0.42 -0.62 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.02 0.30 7.98 -51.93 -0.41 -0.12 16 37 H 0.08 1.83 7.06 -51.93 -0.37 1.47 16 38 H 0.06 0.88 6.78 -51.92 -0.35 0.52 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.97 6.04 -51.93 -0.31 0.65 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 1.45 7.79 -51.92 -0.40 1.04 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -28.63 383.25 -11.45 -40.07 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -10.33 Total: -1.44 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.59 Total: -14.95 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -1.28 Total: -46.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.63 -11.45 -40.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208600648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.201 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds