Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47209 * 2 1 4 4 C 1.53004 * 109.46922 * 179.97438 * 3 2 1 5 5 N 1.46889 * 109.47027 * 179.53471 * 4 3 2 6 6 C 1.46901 * 111.00470 * 288.00945 * 5 4 3 7 7 C 1.50700 * 109.47285 * 160.36076 * 6 5 4 8 8 H 1.07995 * 120.00193 * 4.65220 * 7 6 5 9 9 C 1.37875 * 119.99813 * 184.65977 * 7 6 5 10 10 N 1.31513 * 120.00450 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99913 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.46903 * 119.99805 * 11 9 7 14 14 H 1.48499 * 109.47174 * 239.99670 * 11 9 7 15 15 C 1.46904 * 111.00056 * 164.05442 * 5 4 3 16 16 C 1.53007 * 109.46798 * 293.95544 * 15 5 4 17 17 C 1.52999 * 109.46669 * 179.97438 * 16 15 5 18 18 N 1.46902 * 109.46934 * 180.02562 * 17 16 15 19 19 C 1.46845 * 111.00262 * 169.99862 * 18 17 16 20 20 C 1.53034 * 109.52475 * 185.83596 * 19 18 17 21 21 C 1.53121 * 109.28091 * 300.82087 * 20 19 18 22 22 C 1.53118 * 109.15867 * 57.65291 * 21 20 19 23 23 C 1.46845 * 110.99910 * 294.21045 * 18 17 16 24 24 H 1.09001 * 109.46550 * 59.99440 * 1 2 3 25 25 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47068 * 300.00450 * 1 2 3 27 27 H 1.08998 * 109.47068 * 239.99550 * 2 1 3 28 28 H 1.09008 * 109.46783 * 119.99911 * 2 1 3 29 29 H 1.09000 * 109.47021 * 60.00064 * 3 2 1 30 30 H 1.08999 * 109.46917 * 299.99759 * 3 2 1 31 31 H 1.08999 * 109.46685 * 59.53834 * 4 3 2 32 32 H 1.08993 * 109.47061 * 299.53924 * 4 3 2 33 33 H 1.09001 * 109.46600 * 280.35666 * 6 5 4 34 34 H 1.08993 * 109.46913 * 40.35227 * 6 5 4 35 35 H 0.96997 * 120.00788 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47140 * 173.95858 * 15 5 4 37 37 H 1.09000 * 109.47370 * 53.95444 * 15 5 4 38 38 H 1.08995 * 109.46714 * 60.00200 * 16 15 5 39 39 H 1.08997 * 109.47307 * 299.99596 * 16 15 5 40 40 H 1.08991 * 109.47494 * 60.00132 * 17 16 15 41 41 H 1.09000 * 109.47453 * 299.99872 * 17 16 15 42 42 H 1.09005 * 109.46105 * 65.81904 * 19 18 17 43 43 H 1.08995 * 109.46268 * 305.85665 * 19 18 17 44 44 H 1.09000 * 109.50227 * 180.87783 * 20 19 18 45 45 H 1.08999 * 109.50100 * 60.76588 * 20 19 18 46 46 H 1.09000 * 109.52104 * 177.55617 * 21 20 19 47 47 H 1.08994 * 109.51991 * 297.74667 * 21 20 19 48 48 H 1.09006 * 109.50381 * 62.28790 * 22 21 20 49 49 H 1.09004 * 109.50490 * 182.40557 * 22 21 20 50 50 H 1.09010 * 109.46300 * 294.17499 * 23 18 17 51 51 H 1.08996 * 109.46498 * 54.13763 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8272 -0.0106 6 6 3.8361 3.4542 -1.3201 7 6 3.8875 4.9533 -1.1747 8 1 4.1423 5.3951 -0.2228 9 6 3.6090 5.7608 -2.2570 10 7 3.2990 5.2229 -3.4164 11 14 3.6720 7.6190 -2.0766 12 1 4.0419 7.9687 -0.6816 13 1 4.6843 8.1731 -3.0114 14 1 2.3394 8.1926 -2.3935 15 6 5.4784 2.8871 0.3663 16 6 5.6368 2.4568 1.8260 17 6 7.1144 2.5185 2.2183 18 7 7.2666 2.1048 3.6196 19 6 8.6825 1.9228 3.9638 20 6 8.7956 1.3542 5.3801 21 6 8.1311 2.3184 6.3666 22 6 6.6706 2.5284 5.9576 23 6 6.6190 3.0630 4.5246 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9213 -0.8850 32 1 3.9330 0.9359 0.8949 33 1 4.6106 3.1299 -2.0152 34 1 2.8588 3.1594 -1.7019 35 1 3.1034 5.7909 -4.1779 36 1 5.8434 3.9072 0.2466 37 1 6.0531 2.2180 -0.2742 38 1 5.2718 1.4368 1.9457 39 1 5.0622 3.1259 2.4665 40 1 7.4798 3.5383 2.0985 41 1 7.6887 1.8492 1.5778 42 1 9.1942 2.8842 3.9165 43 1 9.1421 1.2319 3.2572 44 1 9.8470 1.2339 5.6410 45 1 8.2960 0.3864 5.4246 46 1 8.1710 1.8967 7.3710 47 1 8.6549 3.2741 6.3507 48 1 6.1375 1.5791 6.0112 49 1 6.2037 3.2471 6.6311 50 1 7.1404 4.0190 4.4747 51 1 5.5800 3.2002 4.2252 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209449315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -27.946225 kcal Electronic energy + Delta-G solvation = -22936.013869 eV Core-core repulsion = 19868.801010 eV Total energy + Delta-G solvation = -3067.212860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.09853 -37.35462 -34.73167 -33.88331 -32.49646 -31.03809 -30.48045 -28.57654 -26.66913 -24.95156 -23.31624 -22.94117 -22.72387 -20.93125 -20.48697 -19.77220 -19.47566 -16.47320 -16.08049 -15.40223 -15.06146 -14.73173 -14.64388 -14.49292 -14.25271 -14.06813 -13.63132 -13.34789 -13.30418 -13.05994 -12.59196 -12.42410 -12.17729 -12.01830 -11.77521 -11.60175 -11.30859 -11.13427 -11.05112 -10.93229 -10.84023 -10.71231 -10.66968 -10.54439 -10.46746 -10.32954 -10.19710 -10.06991 -9.94424 -9.45282 -9.13724 -8.37802 -8.28259 -7.15880 -5.98306 -3.98800 3.32484 3.39949 3.44895 3.87774 4.45648 4.68065 4.73069 4.79965 4.89002 5.10617 5.25637 5.31696 5.34703 5.36463 5.40957 5.41493 5.50296 5.51184 5.56996 5.64772 5.73470 5.75988 5.77558 5.86566 5.89192 5.94603 5.99253 6.04021 6.07035 6.09831 6.15192 6.20921 6.23610 6.28490 6.34986 6.43649 6.47159 6.66543 6.77092 6.82823 6.93417 7.14296 7.16133 7.33272 7.41453 7.87890 8.19385 8.30906 8.62181 9.09373 9.64990 11.12356 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.004179 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.010371 B = 6698.057053 C = 8573.642417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.054 3.946 5 N -0.536 5.536 6 C 0.191 3.809 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.066 3.934 16 C -0.110 4.110 17 C 0.057 3.943 18 N -0.538 5.538 19 C 0.055 3.945 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.117 4.117 23 C 0.051 3.949 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.061 0.939 33 H -0.014 1.014 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.030 0.970 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -9.197 15.331 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.074 4.074 5 N -0.260 5.260 6 C 0.066 3.934 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.063 4.063 16 C -0.149 4.149 17 C -0.071 4.071 18 N -0.263 5.263 19 C -0.074 4.074 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.077 4.077 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.004 0.996 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.843 -9.321 15.545 19.043 hybrid contribution 0.909 1.399 -0.860 1.877 sum 6.752 -7.922 14.685 18.000 Atomic orbital electron populations 1.21752 0.96278 1.00774 1.01923 1.21501 0.95521 0.97759 1.01231 1.21581 0.95370 0.95150 1.03033 1.22075 0.95267 0.90998 0.99065 1.62091 1.15669 1.14441 1.33777 1.19775 0.96330 0.94281 0.83033 1.21217 1.45684 0.90806 0.96203 0.91982 1.24980 0.95632 0.98791 0.95282 1.69963 1.48032 1.35075 1.00955 0.86494 0.77543 0.85641 0.78052 1.19727 1.21207 1.21060 1.21897 0.89899 1.01100 0.93392 1.21640 0.94122 1.01953 0.97139 1.22100 0.98259 0.98762 0.87976 1.61928 1.13615 1.47682 1.03052 1.22067 0.88894 0.99421 0.96971 1.21576 1.00106 0.99564 0.94133 1.21583 0.96288 0.99388 0.98661 1.21587 0.96507 1.01771 0.95583 1.22155 1.00234 0.92864 0.92434 0.92702 0.93418 0.92879 0.92561 0.92611 0.91720 0.91360 0.96321 0.92081 0.99594 0.94606 0.93084 0.90416 0.96545 0.91699 0.91401 0.94811 0.91139 0.95216 0.90963 0.91892 0.91158 0.92071 0.92468 0.91148 0.91746 0.95160 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.97 5.29 -26.73 -0.14 -2.11 16 4 C 0.05 1.00 4.83 -3.83 -0.02 0.98 16 5 N -0.54 -11.56 4.38 -236.07 -1.03 -12.60 16 6 C 0.19 5.00 4.59 -4.98 -0.02 4.97 16 7 C -0.50 -14.15 8.61 -34.44 -0.30 -14.44 16 8 H 0.06 1.75 7.66 -52.49 -0.40 1.35 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 11 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.07 1.27 4.78 -3.82 -0.02 1.25 16 16 C -0.11 -1.72 5.11 -26.73 -0.14 -1.86 16 17 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 18 N -0.54 -6.70 4.66 -234.68 -1.09 -7.79 16 19 C 0.05 0.58 5.46 -3.84 -0.02 0.56 16 20 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 21 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 22 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 23 C 0.05 0.60 5.29 -3.84 -0.02 0.58 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 31 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.06 1.01 5.94 -51.93 -0.31 0.71 16 33 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 34 H 0.04 1.00 6.24 -51.93 -0.32 0.68 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.63 7.32 -51.93 -0.38 1.25 16 37 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 39 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 40 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 51 H 0.08 1.05 6.21 -51.93 -0.32 0.73 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -29.34 384.80 -11.98 -41.31 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -10.30 Total: -2.34 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.07 Total: -15.00 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -1.39 Total: -46.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.34 -11.98 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209449315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.367 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds