Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 7 7 O 1.42896 * 109.46800 * 180.02562 * 5 4 2 8 8 C 1.42902 * 114.00187 * 89.99895 * 7 5 4 9 9 C 1.52998 * 109.47281 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47392 * 179.97438 * 9 8 7 11 11 C 1.53007 * 109.47350 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47107 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46933 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00371 * 359.97438 * 13 12 11 15 15 C 1.37887 * 119.99750 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00057 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99842 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47127 * 59.99756 * 17 15 13 19 19 H 1.48500 * 109.47029 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46889 * 300.00229 * 17 15 13 21 21 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 22 22 C 1.53002 * 109.47092 * 300.00075 * 21 5 4 23 23 C 1.53000 * 109.46911 * 179.97438 * 22 21 5 24 24 C 1.52996 * 109.46969 * 299.99940 * 22 21 5 25 25 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 30 30 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 31 31 H 1.09007 * 109.46842 * 299.99639 * 8 7 5 32 32 H 1.09000 * 109.47214 * 59.99737 * 8 7 5 33 33 H 1.08997 * 109.47016 * 299.99602 * 9 8 7 34 34 H 1.09000 * 109.47235 * 59.99720 * 9 8 7 35 35 H 1.08996 * 109.47690 * 300.00070 * 10 9 8 36 36 H 1.09000 * 109.46913 * 59.99824 * 10 9 8 37 37 H 1.08995 * 109.46913 * 300.00324 * 11 10 9 38 38 H 1.09000 * 109.46921 * 60.00240 * 11 10 9 39 39 H 1.09007 * 109.47003 * 300.00038 * 12 11 10 40 40 H 1.09000 * 109.47185 * 60.00217 * 12 11 10 41 41 H 0.96998 * 120.00062 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47045 * 59.99942 * 21 5 4 43 43 H 1.09000 * 109.47140 * 179.97438 * 21 5 4 44 44 H 1.09004 * 109.46724 * 60.00450 * 23 22 21 45 45 H 1.08992 * 109.47098 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47583 * 300.00736 * 23 22 21 47 47 H 1.08996 * 109.47452 * 59.99938 * 24 22 21 48 48 H 1.09001 * 109.46997 * 180.02562 * 24 22 21 49 49 H 1.09000 * 109.47054 * 300.00097 * 24 22 21 50 50 H 1.09001 * 109.47194 * 299.99650 * 25 2 1 51 51 H 1.08992 * 109.47399 * 59.99823 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 1 3.9336 0.3058 -1.2488 7 8 4.0462 -1.3948 -2.4161 8 6 4.2405 -0.5376 -3.5428 9 6 4.7482 -1.3608 -4.7283 10 6 4.9556 -0.4432 -5.9349 11 6 5.4639 -1.2663 -7.1203 12 6 5.6719 -0.3486 -8.3267 13 6 6.1719 -1.1594 -9.4943 14 1 6.3264 -2.2228 -9.3867 15 6 6.4323 -0.5435 -10.7002 16 7 6.2447 0.7516 -10.8312 17 14 7.0528 -1.5484 -12.1475 18 1 6.0557 -2.5952 -12.4871 19 1 7.2534 -0.6579 -13.3187 20 1 8.3421 -2.1913 -11.7871 21 6 4.0795 -1.4433 0.0002 22 6 3.5695 -0.7221 1.2495 23 6 4.0785 -1.4441 2.4987 24 6 4.0800 0.7202 1.2498 25 6 2.0400 -0.7213 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.2943 -0.0654 -3.8075 32 1 4.9726 0.2304 -3.2932 33 1 5.6942 -1.8333 -4.4640 34 1 4.0158 -2.1285 -4.9779 35 1 4.0095 0.0291 -6.1992 36 1 5.6878 0.3248 -5.6856 37 1 6.4101 -1.7382 -6.8558 38 1 4.7319 -2.0346 -7.3697 39 1 4.7257 0.1237 -8.5913 40 1 6.4040 0.4194 -8.0770 41 1 6.4275 1.1848 -11.6796 42 1 3.7158 -2.4709 0.0000 43 1 5.1695 -1.4441 0.0002 44 1 5.1686 -1.4447 2.4991 45 1 3.7156 -0.9301 3.3886 46 1 3.7146 -2.4716 2.4983 47 1 3.7170 1.2343 0.3598 48 1 3.7170 1.2339 2.1400 49 1 5.1700 0.7198 1.2500 50 1 1.6767 -0.2075 2.1392 51 1 1.6766 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224369365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = -113.922515 kcal Electronic energy + Delta-G solvation = -22386.031996 eV Core-core repulsion = 19282.798173 eV Total energy + Delta-G solvation = -3103.233823 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28233 -37.58873 -35.21677 -34.34154 -32.88526 -31.19607 -29.76812 -27.70536 -26.95141 -26.66963 -26.25065 -23.39327 -21.90359 -20.95549 -20.83268 -19.98440 -18.76238 -16.58759 -16.11205 -15.94476 -15.53924 -15.36966 -14.81019 -14.64032 -14.44219 -13.95404 -13.71331 -13.60151 -12.93050 -12.80560 -12.57730 -12.41068 -12.34850 -12.13550 -12.07203 -11.97504 -11.77765 -11.54446 -11.35840 -11.23359 -11.09323 -10.95401 -10.89284 -10.65916 -10.58563 -10.43503 -10.34813 -10.31263 -10.22874 -9.59645 -9.41530 -9.21639 -8.98031 -8.30107 -5.95481 -3.97491 3.36219 3.40058 3.42985 3.55328 4.26152 4.36090 4.49316 4.53737 4.65424 4.79763 4.91006 4.94839 5.10609 5.11074 5.20373 5.27360 5.30072 5.30703 5.35810 5.39926 5.40480 5.48974 5.54576 5.55650 5.58121 5.65268 5.67791 5.74011 5.75204 5.77863 5.82730 5.88537 5.97106 6.01436 6.06873 6.09007 6.14012 6.23942 6.33899 6.46449 6.56558 6.86318 6.99875 7.22041 7.30206 7.73362 7.89455 8.05636 8.48987 9.09839 9.66119 11.15901 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.035252 B = 0.002182 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.086812 B =12831.210338 C =13141.074583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.136 4.136 5 C 0.089 3.911 6 H 0.060 0.940 7 O -0.384 6.384 8 C 0.063 3.937 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.104 4.104 22 C -0.063 4.063 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.103 4.103 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 -0.907 28.549 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.174 4.174 5 C 0.031 3.969 6 H 0.078 0.922 7 O -0.303 6.303 8 C -0.013 4.013 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.142 4.142 22 C -0.063 4.063 23 C -0.198 4.198 24 C -0.205 4.205 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.982 -0.959 28.411 29.813 hybrid contribution 0.265 -0.161 -0.938 0.988 sum -8.717 -1.120 27.473 28.845 Atomic orbital electron populations 1.21818 0.95083 1.01878 1.01637 1.21143 0.95551 0.99782 0.94595 0.90928 1.22104 0.95928 1.01588 0.97733 1.22092 0.93066 0.96004 0.85755 0.92179 1.87907 1.86393 1.35894 1.20147 1.22655 0.99138 0.93171 0.86384 1.21588 1.01664 0.98919 0.93199 1.21587 1.01095 0.98194 0.94458 1.21612 0.99342 0.98669 0.95073 1.19107 0.96843 0.94552 0.91212 1.21263 1.43850 0.94641 0.96065 0.92780 1.25041 0.95798 0.94918 0.98830 1.69956 1.49322 1.09020 1.25367 0.86661 0.79404 0.79992 0.81955 1.20260 1.21323 1.20254 1.21627 1.00939 0.99702 0.91898 1.20499 0.95336 0.95652 0.94799 1.21845 1.01101 1.00171 0.96635 1.22012 1.01064 0.95498 1.01917 1.21672 0.94171 1.00800 0.97444 0.92666 0.92748 0.92613 0.91175 0.91800 0.93622 0.93606 0.91522 0.91528 0.92479 0.92479 0.93430 0.93431 0.96722 0.96717 0.93018 0.91169 0.91349 0.92526 0.92613 0.92577 0.92121 0.92652 0.92575 0.91915 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.69 2.45 -90.62 -0.22 -0.92 16 3 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 4 C -0.14 -1.27 4.82 -26.73 -0.13 -1.40 16 5 C 0.09 0.92 2.34 -26.73 -0.06 0.86 16 6 H 0.06 0.60 6.07 -51.93 -0.32 0.29 16 7 O -0.38 -5.12 9.99 -35.23 -0.35 -5.47 16 8 C 0.06 0.83 5.75 37.16 0.21 1.04 16 9 C -0.12 -1.74 5.58 -26.73 -0.15 -1.89 16 10 C -0.12 -2.01 5.21 -26.73 -0.14 -2.15 16 11 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 17 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C -0.10 -0.95 4.38 -26.73 -0.12 -1.06 16 22 C -0.06 -0.45 0.77 -154.53 -0.12 -0.57 16 23 C -0.14 -0.89 8.47 37.16 0.31 -0.58 16 24 C -0.15 -1.03 7.78 37.16 0.29 -0.74 16 25 C -0.10 -0.72 4.01 -26.76 -0.11 -0.82 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.05 0.57 7.87 -51.92 -0.41 0.17 16 32 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -30.46 387.75 -9.92 -40.38 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -10.56 Total: -6.09 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -0.57 Total: -24.94 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.74 Total: -26.80 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.35 Total: -5.47 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.46 -9.92 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224369365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.538 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds