Wall clock time and date at job start Tue Mar 31 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 H 1.09003 * 109.47095 * 56.32954 * 3 2 1 5 5 O 1.42893 * 109.47062 * 296.33295 * 3 2 1 6 6 C 1.42904 * 114.00301 * 112.55224 * 5 3 2 7 7 C 1.52996 * 109.47415 * 175.75176 * 6 5 3 8 8 C 1.53001 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47236 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47612 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99283 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00366 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99705 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00191 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47243 * 89.99920 * 15 13 11 17 17 H 1.48491 * 109.47409 * 210.00142 * 15 13 11 18 18 H 1.48501 * 109.47337 * 330.00558 * 15 13 11 19 19 C 1.53001 * 109.47154 * 176.33118 * 3 2 1 20 20 C 1.52995 * 109.47052 * 300.00239 * 19 3 2 21 21 C 1.53001 * 109.47052 * 179.97438 * 20 19 3 22 22 C 1.53004 * 109.47154 * 59.99761 * 21 20 19 23 23 C 1.53005 * 109.46952 * 300.00077 * 22 21 20 24 24 C 1.52995 * 109.47062 * 179.97438 * 19 3 2 25 25 H 1.09004 * 109.47183 * 302.56792 * 1 2 3 26 26 H 1.08996 * 109.47371 * 62.56488 * 1 2 3 27 27 H 1.09002 * 109.47443 * 182.57098 * 1 2 3 28 28 H 1.08996 * 109.47378 * 239.99581 * 2 1 3 29 29 H 1.09004 * 109.46609 * 119.99608 * 2 1 3 30 30 H 1.09001 * 109.46824 * 55.75393 * 6 5 3 31 31 H 1.08997 * 109.47242 * 295.75598 * 6 5 3 32 32 H 1.08997 * 109.47260 * 300.00411 * 7 6 5 33 33 H 1.09001 * 109.46948 * 60.00293 * 7 6 5 34 34 H 1.09004 * 109.46650 * 299.99902 * 8 7 6 35 35 H 1.09001 * 109.47217 * 60.00025 * 8 7 6 36 36 H 1.09004 * 109.46909 * 299.99362 * 9 8 7 37 37 H 1.08992 * 109.47513 * 59.99558 * 9 8 7 38 38 H 1.09004 * 109.47307 * 299.99889 * 10 9 8 39 39 H 1.09001 * 109.47217 * 59.99643 * 10 9 8 40 40 H 0.97003 * 119.99982 * 179.97438 * 14 13 11 41 41 H 1.08995 * 109.46970 * 60.00001 * 19 3 2 42 42 H 1.09003 * 109.47435 * 299.99215 * 20 19 3 43 43 H 1.09000 * 109.47566 * 59.99897 * 20 19 3 44 44 H 1.09003 * 109.47254 * 299.99694 * 21 20 19 45 45 H 1.09003 * 109.47378 * 179.97438 * 21 20 19 46 46 H 1.09004 * 109.47371 * 180.02562 * 22 21 20 47 47 H 1.08995 * 109.47182 * 60.00131 * 22 21 20 48 48 H 1.08995 * 109.47221 * 300.00030 * 23 22 21 49 49 H 1.08997 * 109.46682 * 179.97438 * 23 22 21 50 50 H 1.09003 * 109.47526 * 300.00147 * 24 19 3 51 51 H 1.09003 * 109.47071 * 59.99906 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 0.8553 5 8 1.6353 2.0908 -1.2074 6 6 0.6791 3.1351 -1.0142 7 6 0.3999 3.8247 -2.3511 8 6 -0.6235 4.9431 -2.1441 9 6 -0.9031 5.6323 -3.4811 10 6 -1.9269 6.7504 -3.2743 11 6 -2.2020 7.4297 -4.5911 12 1 -1.6968 7.0974 -5.4859 13 6 -3.0986 8.4752 -4.6534 14 7 -3.7142 8.8794 -3.5637 15 14 -3.4390 9.3177 -6.2855 16 1 -4.5674 8.6357 -6.9687 17 1 -3.7930 10.7395 -6.0443 18 1 -2.2273 9.2475 -7.1410 19 6 3.5672 1.4436 0.0923 20 6 4.0004 0.7494 1.3851 21 6 5.5277 0.7499 1.4771 22 6 6.0382 2.1922 1.4768 23 6 5.6049 2.8863 0.1839 24 6 4.0772 2.8860 0.0917 25 1 -0.3634 0.5532 0.8661 26 1 -0.3634 0.4735 -0.9120 27 1 -0.3634 -1.0266 0.0461 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.0742 3.8629 -0.3055 31 1 -0.2464 2.7125 -0.6231 32 1 1.3253 4.2472 -2.7423 33 1 0.0047 3.0968 -3.0598 34 1 -1.5490 4.5208 -1.7528 35 1 -0.2280 5.6709 -1.4356 36 1 0.0223 6.0546 -3.8728 37 1 -1.2987 4.9044 -4.1894 38 1 -2.8523 6.3278 -2.8828 39 1 -1.5317 7.4784 -2.5659 40 1 -4.3447 9.6152 -3.6075 41 1 3.9832 0.9111 -0.7629 42 1 3.5845 1.2819 2.2404 43 1 3.6371 -0.2783 1.3851 44 1 5.9434 0.2171 0.6218 45 1 5.8364 0.2557 2.3983 46 1 7.1263 2.1926 1.5419 47 1 5.6226 2.7249 2.3320 48 1 6.0205 2.3536 -0.6714 49 1 5.9682 3.9139 0.1839 50 1 3.7685 3.3802 -0.8296 51 1 3.6611 3.4189 0.9467 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:33 Heat of formation + Delta-G solvation = -118.916863 kcal Electronic energy + Delta-G solvation = -22477.096594 eV Core-core repulsion = 19373.646200 eV Total energy + Delta-G solvation = -3103.450394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.230 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71432 -37.61551 -35.40929 -33.79845 -32.64517 -31.22254 -30.87748 -30.14665 -26.70508 -25.50442 -23.33396 -23.08406 -22.13683 -21.24590 -20.51755 -19.97593 -19.91622 -16.75817 -16.31066 -16.12996 -15.62895 -14.73684 -14.64248 -14.44420 -14.35764 -14.21375 -14.16665 -13.57550 -13.15622 -12.79298 -12.55645 -12.46036 -12.40295 -12.08636 -11.89238 -11.67268 -11.53910 -11.44495 -11.36792 -11.14882 -11.06562 -10.92391 -10.80337 -10.60293 -10.53822 -10.43428 -10.35661 -10.29114 -10.17918 -9.60135 -9.30713 -9.21744 -8.97337 -8.30664 -5.95944 -3.97882 3.34402 3.40300 3.44160 3.61726 4.33254 4.48721 4.49551 4.52710 4.73577 4.88849 4.96297 5.01031 5.08709 5.17299 5.20886 5.26832 5.28019 5.31270 5.32117 5.39639 5.41171 5.48933 5.55952 5.60357 5.71901 5.75098 5.76751 5.80834 5.82704 5.87554 5.90418 5.93389 5.98372 6.06354 6.12245 6.15793 6.20497 6.25411 6.33754 6.46585 6.56667 6.86057 6.99647 7.21803 7.32390 7.73284 7.89117 8.05298 8.48663 9.09682 9.65881 11.15485 Molecular weight = 282.23amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.002440 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.496487 B =11473.077605 C =12209.506255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.093 3.907 4 H 0.059 0.941 5 O -0.378 6.378 6 C 0.062 3.938 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.161 -18.744 12.522 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.035 3.965 4 H 0.078 0.922 5 O -0.297 6.297 6 C -0.014 4.014 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.017 4.017 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.104 -18.658 12.404 28.187 hybrid contribution -0.427 0.632 -0.577 0.956 sum 16.676 -18.026 11.827 27.256 Atomic orbital electron populations 1.21775 0.95612 1.01539 1.02203 1.21970 0.96467 0.96665 1.02420 1.22145 0.93695 0.92892 0.87742 0.92248 1.87898 1.61156 1.50427 1.30243 1.22715 0.91218 0.88775 0.98686 1.21587 1.00227 0.97859 0.95688 1.21584 0.97560 0.96276 0.99904 1.21607 1.00156 0.98585 0.94326 1.19111 0.93377 0.92389 0.96863 1.21299 1.23838 1.15848 0.94739 0.92737 1.25039 0.96083 0.97123 0.96359 1.69972 1.28313 1.27994 1.27392 0.86602 0.78576 0.78723 0.84153 1.20691 1.21254 1.19892 1.21385 0.94314 0.96949 0.98326 1.21635 0.95821 1.00506 0.97287 1.21518 0.95589 0.96850 1.01598 1.21553 1.00141 0.95930 0.98176 1.21537 0.96078 1.00391 0.97666 1.21538 0.95131 0.96058 1.02383 0.93094 0.91953 0.92828 0.91285 0.91061 0.93689 0.93552 0.91586 0.91556 0.92505 0.92512 0.93450 0.93449 0.96725 0.96722 0.93079 0.90567 0.92011 0.91612 0.92013 0.92164 0.92293 0.92117 0.92052 0.92077 0.91037 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.32 37.16 0.35 -1.08 16 2 C -0.14 -1.22 5.40 -26.73 -0.14 -1.37 16 3 C 0.09 0.93 1.83 -26.73 -0.05 0.88 16 4 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 5 O -0.38 -4.75 8.84 -35.23 -0.31 -5.06 16 6 C 0.06 0.80 5.44 37.16 0.20 1.00 16 7 C -0.12 -1.70 5.58 -26.73 -0.15 -1.85 16 8 C -0.12 -1.99 5.21 -26.73 -0.14 -2.13 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.09 -0.81 1.99 -90.62 -0.18 -0.99 16 20 C -0.12 -0.83 4.86 -26.73 -0.13 -0.96 16 21 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.12 -0.98 5.92 -26.70 -0.16 -1.14 16 24 C -0.11 -1.07 5.06 -26.71 -0.14 -1.20 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.52 6.24 -51.93 -0.32 0.20 16 30 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.05 0.57 7.33 -51.93 -0.38 0.19 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.43 6.35 -51.93 -0.33 0.10 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -30.23 389.65 -10.89 -41.12 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -10.62 Total: -5.42 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -1.54 Total: -26.79 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.31 Total: -5.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.23 -10.89 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.801 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds